Wall clock time and date at job start Wed Apr 1 2020 03:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.44916 * 2 1 4 4 C 1.53031 * 109.45732 * 240.02932 * 2 1 3 5 5 C 1.53201 * 109.31056 * 178.61397 * 4 2 1 6 6 N 1.46916 * 108.77284 * 54.63766 * 5 4 2 7 7 C 1.34778 * 120.63124 * 126.37202 * 6 5 4 8 8 O 1.21286 * 120.00002 * 185.78050 * 7 6 5 9 9 C 1.50702 * 119.99867 * 5.77881 * 7 6 5 10 10 H 1.09004 * 110.26270 * 302.05404 * 9 7 6 11 11 C 1.54340 * 110.29494 * 179.97438 * 9 7 6 12 12 C 1.54357 * 102.39148 * 214.73162 * 11 9 7 13 13 C 1.51224 * 105.11812 * 26.29603 * 12 11 9 14 14 C 1.38746 * 130.69103 * 162.87549 * 13 12 11 15 15 C 1.38572 * 118.55502 * 179.97438 * 14 13 12 16 16 C 1.38223 * 118.99252 * 0.02562 * 15 14 13 17 17 N 1.31691 * 120.80350 * 0.02562 * 16 15 14 18 18 C 1.32300 * 122.02705 * 359.94856 * 17 16 15 19 19 C 1.46923 * 118.74164 * 306.38805 * 6 5 4 20 20 H 1.08999 * 109.59091 * 293.68515 * 19 6 5 21 21 C 1.53006 * 109.59089 * 173.39636 * 19 6 5 22 22 N 1.46497 * 109.47226 * 179.97438 * 21 19 6 23 23 C 1.36932 * 119.99805 * 174.98742 * 22 21 19 24 24 H 1.08000 * 120.00053 * 359.72585 * 23 22 21 25 25 C 1.38812 * 120.00081 * 180.02562 * 23 22 21 26 26 N 1.31616 * 119.99861 * 359.72282 * 25 23 22 27 27 Si 1.86797 * 120.00129 * 179.72606 * 25 23 22 28 28 H 1.48502 * 109.47163 * 359.97438 * 27 25 23 29 29 H 1.48502 * 109.47195 * 120.00080 * 27 25 23 30 30 H 1.48500 * 109.47288 * 239.99700 * 27 25 23 31 31 C 1.53041 * 109.45671 * 119.96522 * 2 1 3 32 32 H 1.09005 * 109.47465 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47164 * 299.96811 * 1 2 3 34 34 H 1.08996 * 109.47527 * 59.97211 * 1 2 3 35 35 H 1.09002 * 109.50038 * 58.66856 * 4 2 1 36 36 H 1.09004 * 109.50322 * 298.56676 * 4 2 1 37 37 H 1.08995 * 109.58438 * 294.84683 * 5 4 2 38 38 H 1.09008 * 109.58455 * 174.42596 * 5 4 2 39 39 H 1.09004 * 110.82098 * 332.96228 * 11 9 7 40 40 H 1.09006 * 110.81794 * 96.50300 * 11 9 7 41 41 H 1.09002 * 110.31370 * 145.20448 * 12 11 9 42 42 H 1.09005 * 110.31696 * 267.28200 * 12 11 9 43 43 H 1.07996 * 120.72066 * 359.95442 * 14 13 12 44 44 H 1.08009 * 120.50376 * 179.97438 * 15 14 13 45 45 H 1.08000 * 119.60214 * 179.97438 * 16 15 14 46 46 H 1.09001 * 109.46727 * 59.96812 * 21 19 6 47 47 H 1.08997 * 109.47087 * 299.97202 * 21 19 6 48 48 H 0.96997 * 120.00206 * 354.98708 * 22 21 19 49 49 H 0.97004 * 120.00245 * 180.02562 * 26 25 23 50 50 H 1.08994 * 109.50168 * 61.43772 * 31 2 1 51 51 H 1.08999 * 109.50037 * 301.33133 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2642 6 7 4.0678 -1.2488 0.0000 7 6 4.9614 -2.2578 0.0001 8 8 5.2843 -2.7817 1.0452 9 6 5.5592 -2.7349 -1.2984 10 1 4.7722 -3.0562 -1.9807 11 6 6.5487 -3.8907 -1.0394 12 6 7.6309 -3.6470 -2.1128 13 6 7.5771 -2.1628 -2.3972 14 6 8.4942 -1.3268 -3.0178 15 6 8.1830 0.0172 -3.1483 16 6 6.9751 0.4759 -2.6572 17 7 6.1288 -0.3464 -2.0727 18 6 6.3888 -1.6357 -1.9292 19 6 3.5714 -0.6885 1.2643 20 1 3.9163 0.3402 1.3685 21 6 4.0911 -1.5250 2.4353 22 7 3.5952 -0.9638 3.6943 23 6 3.8466 -1.6071 4.8767 24 1 4.4067 -2.5305 4.8806 25 6 3.3762 -1.0756 6.0697 26 7 2.6933 0.0495 6.0649 27 14 3.7126 -1.9572 7.6818 28 1 4.4946 -3.1916 7.4172 29 1 4.4856 -1.0645 8.5823 30 1 2.4246 -2.3167 8.3276 31 6 2.0398 -0.7207 1.2501 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5134 0.8903 34 1 -0.3634 0.5142 -0.8897 35 1 1.6572 -0.2208 -2.1398 36 1 1.6977 -1.7557 -1.2382 37 1 3.9142 0.3408 -1.3674 38 1 3.9416 -1.2846 -2.0984 39 1 6.9733 -3.8202 -0.0379 40 1 6.0648 -4.8559 -1.1891 41 1 8.6131 -3.9235 -1.7294 42 1 7.4039 -4.2152 -3.0149 43 1 9.4304 -1.7151 -3.3908 44 1 8.8741 0.6961 -3.6258 45 1 6.7227 1.5216 -2.7533 46 1 5.1810 -1.5116 2.4357 47 1 3.7404 -2.5518 2.3322 48 1 3.0887 -0.1365 3.6905 49 1 2.3649 0.4211 6.8986 50 1 1.6978 -1.7556 1.2384 51 1 1.6572 -0.2207 2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263999282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:04 Heat of formation + Delta-G solvation = 26.607078 kcal Electronic energy + Delta-G solvation = -31444.772108 eV Core-core repulsion = 27537.535149 eV Total energy + Delta-G solvation = -3907.236959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.34909 -39.87633 -37.67642 -36.10879 -34.63021 -33.82853 -32.85299 -31.78756 -29.65978 -29.54868 -28.88780 -27.56200 -25.38343 -23.74234 -23.35314 -23.22237 -22.15559 -21.75476 -20.47554 -20.03104 -18.74993 -17.12668 -16.98818 -16.75646 -16.56565 -15.72490 -15.24287 -14.91639 -14.86890 -14.42093 -14.19940 -14.02203 -13.76983 -13.64583 -13.38281 -13.20412 -13.16018 -12.97146 -12.80502 -12.66387 -12.20688 -11.98805 -11.87983 -11.79432 -11.63960 -11.57829 -11.29554 -11.20541 -10.91005 -10.76612 -10.64146 -10.57931 -10.26193 -10.09089 -9.97435 -9.87266 -9.56932 -9.47202 -9.07950 -8.74352 -8.56330 -8.11158 -6.67990 -5.59969 -2.85532 0.83185 1.04121 2.84328 3.22145 3.54110 3.57072 3.59784 3.62986 3.74394 4.13642 4.45479 4.59732 4.66912 4.71663 4.77845 4.86561 4.93271 4.98276 5.02476 5.03874 5.14231 5.26944 5.32849 5.39120 5.49952 5.53719 5.60155 5.65615 5.71940 5.74818 5.77804 5.78693 5.88393 5.90627 5.96808 5.98658 6.04272 6.09971 6.12885 6.24375 6.31012 6.39153 6.40669 6.44767 6.50106 6.72810 6.92305 7.23652 7.40989 7.76091 7.77541 7.91131 8.50595 8.62929 9.70642 10.31163 10.66209 11.63831 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.003505 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.894693 B = 7987.585913 C = 9436.770234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.133 4.133 5 C 0.127 3.873 6 N -0.592 5.592 7 C 0.517 3.483 8 O -0.516 6.516 9 C -0.061 4.061 10 H 0.114 0.886 11 C -0.105 4.105 12 C -0.079 4.079 13 C -0.142 4.142 14 C -0.066 4.066 15 C -0.172 4.172 16 C 0.103 3.897 17 N -0.466 5.466 18 C 0.127 3.873 19 C 0.141 3.859 20 H 0.068 0.932 21 C 0.166 3.834 22 N -0.738 5.738 23 C -0.221 4.221 24 H 0.070 0.930 25 C -0.021 4.021 26 N -0.939 5.939 27 Si 0.904 3.096 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.293 1.293 31 C -0.118 4.118 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.132 0.868 44 H 0.136 0.864 45 H 0.158 0.842 46 H 0.039 0.961 47 H 0.036 0.964 48 H 0.378 0.622 49 H 0.251 0.749 50 H 0.063 0.937 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.410 -1.846 -26.911 27.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.171 4.171 5 C 0.004 3.996 6 N -0.324 5.324 7 C 0.303 3.697 8 O -0.391 6.391 9 C -0.083 4.083 10 H 0.132 0.868 11 C -0.143 4.143 12 C -0.117 4.117 13 C -0.144 4.144 14 C -0.092 4.092 15 C -0.192 4.192 16 C -0.055 4.055 17 N -0.174 5.174 18 C -0.010 4.010 19 C 0.038 3.962 20 H 0.086 0.914 21 C 0.040 3.960 22 N -0.384 5.384 23 C -0.352 4.352 24 H 0.088 0.912 25 C -0.215 4.215 26 N -0.589 5.589 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.221 1.221 30 H -0.221 1.221 31 C -0.156 4.156 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.150 0.850 44 H 0.154 0.846 45 H 0.175 0.825 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.211 0.789 49 H 0.061 0.939 50 H 0.082 0.918 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.865 -1.929 -25.928 26.653 hybrid contribution 0.750 -0.187 0.420 0.880 sum 6.615 -2.116 -25.508 26.437 Atomic orbital electron populations 1.21803 0.95332 1.01621 1.01413 1.21144 0.95500 0.99565 0.94951 0.91254 1.22080 0.95852 1.01056 0.98152 1.21656 0.92523 1.00227 0.85199 1.47951 1.42502 1.34698 1.07291 1.20078 0.79452 0.80162 0.89996 1.90837 1.60897 1.55794 1.31594 1.20959 0.98125 0.93194 0.96064 0.86787 1.22322 0.94541 0.96692 1.00748 1.21018 1.00656 0.90611 0.99398 1.21445 0.95798 0.97661 0.99480 1.21057 0.98679 0.93003 0.96440 1.22087 0.98872 0.96099 1.02114 1.22680 0.90005 0.99320 0.93479 1.67023 1.33861 1.03133 1.13422 1.21393 0.93551 0.90661 0.95441 1.21560 0.93618 0.97745 0.83266 0.91432 1.21238 0.97013 0.94442 0.83339 1.42597 1.65876 1.28463 1.01440 1.19293 1.27185 1.04110 0.84656 0.91203 1.24685 1.01499 0.97837 0.97510 1.69669 1.42782 1.20852 1.25607 0.86135 0.77219 0.78723 0.84355 1.20620 1.22088 1.22091 1.21977 0.94724 1.01203 0.97697 0.92921 0.92379 0.93205 0.91335 0.91955 0.90514 0.90645 0.88421 0.89449 0.89999 0.89747 0.85022 0.84616 0.82487 0.94287 0.94610 0.78850 0.93873 0.91814 0.89726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.19 37.16 0.34 -1.37 16 2 C -0.09 -1.22 2.68 -90.58 -0.24 -1.46 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.13 -1.50 5.36 -26.61 -0.14 -1.64 16 5 C 0.13 1.55 4.53 -3.71 -0.02 1.53 16 6 N -0.59 -9.26 2.96 -165.21 -0.49 -9.75 16 7 C 0.52 8.44 6.97 -10.98 -0.08 8.37 16 8 O -0.52 -10.48 10.89 5.55 0.06 -10.42 16 9 C -0.06 -0.73 2.34 -91.84 -0.21 -0.94 16 10 H 0.11 1.11 7.36 -51.93 -0.38 0.73 16 11 C -0.10 -1.09 6.35 -25.32 -0.16 -1.25 16 12 C -0.08 -0.65 6.77 -26.92 -0.18 -0.83 16 13 C -0.14 -1.42 6.16 -104.20 -0.64 -2.06 16 14 C -0.07 -0.55 10.17 -39.27 -0.40 -0.95 16 15 C -0.17 -1.36 10.12 -39.46 -0.40 -1.76 16 16 C 0.10 0.97 11.18 -17.62 -0.20 0.77 16 17 N -0.47 -5.54 7.43 -9.19 -0.07 -5.61 16 18 C 0.13 1.50 5.98 -82.03 -0.49 1.01 16 19 C 0.14 2.63 3.04 -67.59 -0.21 2.42 16 20 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 21 C 0.17 3.92 4.10 -4.04 -0.02 3.90 16 22 N -0.74 -20.28 5.28 -59.91 -0.32 -20.59 16 23 C -0.22 -6.68 9.99 -15.06 -0.15 -6.83 16 24 H 0.07 2.11 7.83 -52.49 -0.41 1.70 16 25 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 26 N -0.94 -29.60 13.06 55.49 0.72 -28.87 16 27 Si 0.90 23.75 29.55 -169.99 -5.02 18.73 16 28 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 29 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 30 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 31 C -0.12 -2.00 4.40 -26.61 -0.12 -2.12 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.95 7.53 -51.93 -0.39 0.56 16 38 H 0.08 0.83 5.12 -51.92 -0.27 0.56 16 39 H 0.10 1.27 7.02 -51.93 -0.36 0.91 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 45 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 46 H 0.04 1.02 6.46 -51.93 -0.34 0.68 16 47 H 0.04 0.91 7.03 -51.93 -0.36 0.54 16 48 H 0.38 10.62 6.78 -40.82 -0.28 10.35 16 49 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 50 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 51 H 0.08 1.63 7.19 -51.93 -0.37 1.26 16 LS Contribution 389.69 15.07 5.87 5.87 Total: -1.00 -35.42 389.69 -10.87 -46.29 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -8.22 Total: 8.29 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -3.41 Total: -3.94 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: -0.15 Total: -64.83 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.06 Total: -10.42 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -5.02 Total: 18.73 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.42 -10.87 -46.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263999282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.897 kcal (2) G-P(sol) polarization free energy of solvation -35.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds