Wall clock time and date at job start Wed Apr 1 2020 03:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.44916 * 2 1 4 4 C 1.53031 * 109.45732 * 240.02932 * 2 1 3 5 5 C 1.53201 * 109.31056 * 178.61397 * 4 2 1 6 6 N 1.46916 * 108.77284 * 54.63766 * 5 4 2 7 7 C 1.34778 * 120.63124 * 126.37202 * 6 5 4 8 8 O 1.21286 * 120.00002 * 185.78050 * 7 6 5 9 9 C 1.50702 * 119.99867 * 5.77881 * 7 6 5 10 10 H 1.09004 * 110.26270 * 302.05404 * 9 7 6 11 11 C 1.54340 * 110.29494 * 179.97438 * 9 7 6 12 12 C 1.54357 * 102.39148 * 214.73162 * 11 9 7 13 13 C 1.51224 * 105.11812 * 26.29603 * 12 11 9 14 14 C 1.38746 * 130.69103 * 162.87549 * 13 12 11 15 15 C 1.38572 * 118.55502 * 179.97438 * 14 13 12 16 16 C 1.38223 * 118.99252 * 0.02562 * 15 14 13 17 17 N 1.31691 * 120.80350 * 0.02562 * 16 15 14 18 18 C 1.32300 * 122.02705 * 359.94856 * 17 16 15 19 19 C 1.46923 * 118.74164 * 306.38805 * 6 5 4 20 20 H 1.08999 * 109.59091 * 293.68515 * 19 6 5 21 21 C 1.53006 * 109.59089 * 173.39636 * 19 6 5 22 22 N 1.46497 * 109.47226 * 179.97438 * 21 19 6 23 23 C 1.36932 * 119.99805 * 174.98742 * 22 21 19 24 24 H 1.08000 * 120.00053 * 359.72585 * 23 22 21 25 25 C 1.38812 * 120.00081 * 180.02562 * 23 22 21 26 26 N 1.31616 * 119.99861 * 359.72282 * 25 23 22 27 27 Si 1.86797 * 120.00129 * 179.72606 * 25 23 22 28 28 H 1.48502 * 109.47163 * 359.97438 * 27 25 23 29 29 H 1.48502 * 109.47195 * 120.00080 * 27 25 23 30 30 H 1.48500 * 109.47288 * 239.99700 * 27 25 23 31 31 C 1.53041 * 109.45671 * 119.96522 * 2 1 3 32 32 H 1.09005 * 109.47465 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47164 * 299.96811 * 1 2 3 34 34 H 1.08996 * 109.47527 * 59.97211 * 1 2 3 35 35 H 1.09002 * 109.50038 * 58.66856 * 4 2 1 36 36 H 1.09004 * 109.50322 * 298.56676 * 4 2 1 37 37 H 1.08995 * 109.58438 * 294.84683 * 5 4 2 38 38 H 1.09008 * 109.58455 * 174.42596 * 5 4 2 39 39 H 1.09004 * 110.82098 * 332.96228 * 11 9 7 40 40 H 1.09006 * 110.81794 * 96.50300 * 11 9 7 41 41 H 1.09002 * 110.31370 * 145.20448 * 12 11 9 42 42 H 1.09005 * 110.31696 * 267.28200 * 12 11 9 43 43 H 1.07996 * 120.72066 * 359.95442 * 14 13 12 44 44 H 1.08009 * 120.50376 * 179.97438 * 15 14 13 45 45 H 1.08000 * 119.60214 * 179.97438 * 16 15 14 46 46 H 1.09001 * 109.46727 * 59.96812 * 21 19 6 47 47 H 1.08997 * 109.47087 * 299.97202 * 21 19 6 48 48 H 0.96997 * 120.00206 * 354.98708 * 22 21 19 49 49 H 0.97004 * 120.00245 * 180.02562 * 26 25 23 50 50 H 1.08994 * 109.50168 * 61.43772 * 31 2 1 51 51 H 1.08999 * 109.50037 * 301.33133 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2642 6 7 4.0678 -1.2488 0.0000 7 6 4.9614 -2.2578 0.0001 8 8 5.2843 -2.7817 1.0452 9 6 5.5592 -2.7349 -1.2984 10 1 4.7722 -3.0562 -1.9807 11 6 6.5487 -3.8907 -1.0394 12 6 7.6309 -3.6470 -2.1128 13 6 7.5771 -2.1628 -2.3972 14 6 8.4942 -1.3268 -3.0178 15 6 8.1830 0.0172 -3.1483 16 6 6.9751 0.4759 -2.6572 17 7 6.1288 -0.3464 -2.0727 18 6 6.3888 -1.6357 -1.9292 19 6 3.5714 -0.6885 1.2643 20 1 3.9163 0.3402 1.3685 21 6 4.0911 -1.5250 2.4353 22 7 3.5952 -0.9638 3.6943 23 6 3.8466 -1.6071 4.8767 24 1 4.4067 -2.5305 4.8806 25 6 3.3762 -1.0756 6.0697 26 7 2.6933 0.0495 6.0649 27 14 3.7126 -1.9572 7.6818 28 1 4.4946 -3.1916 7.4172 29 1 4.4856 -1.0645 8.5823 30 1 2.4246 -2.3167 8.3276 31 6 2.0398 -0.7207 1.2501 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5134 0.8903 34 1 -0.3634 0.5142 -0.8897 35 1 1.6572 -0.2208 -2.1398 36 1 1.6977 -1.7557 -1.2382 37 1 3.9142 0.3408 -1.3674 38 1 3.9416 -1.2846 -2.0984 39 1 6.9733 -3.8202 -0.0379 40 1 6.0648 -4.8559 -1.1891 41 1 8.6131 -3.9235 -1.7294 42 1 7.4039 -4.2152 -3.0149 43 1 9.4304 -1.7151 -3.3908 44 1 8.8741 0.6961 -3.6258 45 1 6.7227 1.5216 -2.7533 46 1 5.1810 -1.5116 2.4357 47 1 3.7404 -2.5518 2.3322 48 1 3.0887 -0.1365 3.6905 49 1 2.3649 0.4211 6.8986 50 1 1.6978 -1.7556 1.2384 51 1 1.6572 -0.2207 2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263999282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:03 Heat of formation + Delta-G solvation = 4.742639 kcal Electronic energy + Delta-G solvation = -31445.720221 eV Core-core repulsion = 27537.535149 eV Total energy + Delta-G solvation = -3908.185072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.28882 -40.98630 -38.87804 -37.05404 -36.54615 -35.00478 -34.07700 -33.31780 -31.45826 -30.32170 -29.82047 -28.61609 -27.25225 -25.10758 -24.50240 -24.28132 -23.36102 -22.74301 -21.82360 -21.14699 -19.97483 -19.13553 -18.12678 -17.75687 -17.40086 -16.97488 -16.62041 -16.30763 -15.90936 -15.71230 -15.43905 -15.36417 -15.07368 -14.72169 -14.62372 -14.47023 -14.38427 -14.13964 -13.99304 -13.81750 -13.58192 -13.24159 -12.92776 -12.88301 -12.84771 -12.76570 -12.60851 -12.53743 -12.42573 -12.15628 -12.05703 -12.02126 -11.93979 -11.77713 -11.38600 -11.21962 -10.99686 -10.66298 -10.36420 -10.11395 -9.61922 -9.49504 -8.96617 -7.97222 -5.25545 0.13035 0.37963 1.42390 1.44377 1.55380 1.61564 1.98320 2.54925 2.83768 2.96404 3.35177 3.36182 3.51712 3.75424 3.80944 3.82920 3.92694 3.97692 4.09673 4.12265 4.13257 4.20588 4.27122 4.29426 4.38719 4.48067 4.57395 4.60899 4.65122 4.70251 4.73171 4.82466 4.85210 4.91170 4.98192 5.00643 5.07436 5.10080 5.15921 5.18529 5.23479 5.25620 5.28038 5.29312 5.32809 5.40249 5.45023 5.54177 5.71399 5.80578 6.25210 6.52295 7.04056 7.23636 7.31125 8.05167 8.33321 9.26620 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.003505 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.894693 B = 7987.585913 C = 9436.770234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.125 4.125 5 C 0.129 3.871 6 N -0.590 5.590 7 C 0.506 3.494 8 O -0.568 6.568 9 C -0.052 4.052 10 H 0.138 0.862 11 C -0.106 4.106 12 C -0.070 4.070 13 C -0.149 4.149 14 C -0.070 4.070 15 C -0.163 4.163 16 C 0.085 3.915 17 N -0.491 5.491 18 C 0.096 3.904 19 C 0.151 3.849 20 H 0.058 0.942 21 C 0.183 3.817 22 N -0.745 5.745 23 C -0.243 4.243 24 H 0.061 0.939 25 C -0.072 4.072 26 N -0.967 5.967 27 Si 0.975 3.025 28 H -0.273 1.273 29 H -0.288 1.288 30 H -0.286 1.286 31 C -0.107 4.107 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.160 0.840 44 H 0.167 0.833 45 H 0.177 0.823 46 H 0.012 0.988 47 H 0.015 0.985 48 H 0.372 0.628 49 H 0.253 0.747 50 H 0.049 0.951 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.040 -1.850 -29.912 30.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 H 0.091 0.909 4 C -0.163 4.163 5 C 0.008 3.992 6 N -0.322 5.322 7 C 0.295 3.705 8 O -0.447 6.447 9 C -0.074 4.074 10 H 0.155 0.845 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.151 4.151 14 C -0.096 4.096 15 C -0.182 4.182 16 C -0.072 4.072 17 N -0.200 5.200 18 C -0.041 4.041 19 C 0.047 3.953 20 H 0.076 0.924 21 C 0.057 3.943 22 N -0.390 5.390 23 C -0.375 4.375 24 H 0.079 0.921 25 C -0.264 4.264 26 N -0.618 5.618 27 Si 0.803 3.197 28 H -0.198 1.198 29 H -0.214 1.214 30 H -0.213 1.213 31 C -0.146 4.146 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.130 0.870 43 H 0.178 0.822 44 H 0.185 0.815 45 H 0.194 0.806 46 H 0.030 0.970 47 H 0.033 0.967 48 H 0.205 0.795 49 H 0.062 0.938 50 H 0.067 0.933 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.492 -1.932 -28.986 29.767 hybrid contribution 0.624 -0.131 1.331 1.476 sum 7.117 -2.063 -27.655 28.631 Atomic orbital electron populations 1.21768 0.93976 1.01835 1.02181 1.21113 0.96573 0.99293 0.93617 0.90908 1.22064 0.94814 1.01196 0.98252 1.21860 0.93239 1.00390 0.83717 1.48059 1.42295 1.34560 1.07258 1.21000 0.78759 0.79499 0.91277 1.90806 1.62370 1.57562 1.34011 1.20960 0.98909 0.93970 0.93517 0.84454 1.22317 0.95196 0.97105 0.99810 1.21016 1.00109 0.90048 0.99499 1.21703 0.95380 0.98626 0.99387 1.21454 0.99323 0.93050 0.95764 1.22463 0.98531 0.96518 1.00736 1.23133 0.90578 1.00016 0.93459 1.66949 1.35282 1.03435 1.14347 1.21385 0.94599 0.90878 0.97206 1.21185 0.94760 0.96137 0.83247 0.92377 1.21024 0.95174 0.94051 0.84043 1.42738 1.65791 1.28190 1.02245 1.19539 1.27593 1.04240 0.86125 0.92066 1.25534 1.01287 0.98704 1.00878 1.69818 1.43376 1.22062 1.26535 0.85057 0.77254 0.77768 0.79594 1.19790 1.21450 1.21299 1.21832 0.93225 1.00543 0.98976 0.93004 0.93666 0.90374 0.87833 0.91966 0.90391 0.88748 0.91955 0.87677 0.89075 0.86979 0.82203 0.81523 0.80637 0.97027 0.96736 0.79531 0.93832 0.93257 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.19 71.98 0.66 -2.48 16 2 C -0.09 -2.23 2.68 -10.77 -0.03 -2.26 16 3 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 4 C -0.13 -2.54 5.36 30.67 0.16 -2.38 16 5 C 0.13 2.99 4.53 86.37 0.39 3.38 16 6 N -0.59 -19.05 2.96 -795.00 -2.35 -21.41 16 7 C 0.51 17.32 6.97 87.66 0.61 17.93 16 8 O -0.57 -25.03 10.89 -3.05 -0.03 -25.06 16 9 C -0.05 -1.22 2.34 -11.58 -0.03 -1.25 16 10 H 0.14 2.46 7.36 -2.38 -0.02 2.44 16 11 C -0.11 -2.19 6.35 31.51 0.20 -1.99 16 12 C -0.07 -0.99 6.77 30.47 0.21 -0.78 16 13 C -0.15 -2.68 6.16 -19.59 -0.12 -2.80 16 14 C -0.07 -0.97 10.17 22.47 0.23 -0.74 16 15 C -0.16 -2.10 10.12 22.35 0.23 -1.87 16 16 C 0.09 1.45 11.18 84.71 0.95 2.40 16 17 N -0.49 -11.12 7.43 -182.98 -1.36 -12.48 16 18 C 0.10 2.18 5.98 42.72 0.26 2.43 16 19 C 0.15 5.98 3.04 44.98 0.14 6.11 16 20 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 21 C 0.18 9.33 4.10 86.38 0.35 9.68 16 22 N -0.74 -43.54 5.28 -343.46 -1.81 -45.35 16 23 C -0.24 -15.37 9.99 84.03 0.84 -14.53 16 24 H 0.06 3.89 7.83 -2.91 -0.02 3.87 16 25 C -0.07 -4.47 5.50 84.86 0.47 -4.00 16 26 N -0.97 -62.43 13.06 21.65 0.28 -62.15 16 27 Si 0.97 49.79 29.55 68.60 2.03 51.82 16 28 H -0.27 -13.48 7.11 99.48 0.71 -12.77 16 29 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 30 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 31 C -0.11 -3.84 4.40 30.67 0.14 -3.70 16 32 H 0.05 1.16 8.14 -2.38 -0.02 1.15 16 33 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.08 1.83 7.53 -2.39 -0.02 1.81 16 38 H 0.09 1.88 5.12 -2.38 -0.01 1.86 16 39 H 0.06 1.74 7.02 -2.38 -0.02 1.73 16 40 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 44 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 45 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 46 H 0.01 0.67 6.46 -2.39 -0.02 0.66 16 47 H 0.01 0.80 7.03 -2.39 -0.02 0.79 16 48 H 0.37 22.24 6.78 -92.71 -0.63 21.61 16 49 H 0.25 15.60 8.31 -92.71 -0.77 14.82 16 50 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.05 2.26 7.19 -2.39 -0.02 2.25 16 Total: -1.00 -81.88 389.69 2.70 -79.19 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: 0.30 Total: 32.27 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.65 Total: 3.16 kcal Atomic # 7 Polarization: -136.13 SS G_CDS: -5.25 Total: -141.38 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.03 Total: -25.06 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 2.03 Total: 51.82 kcal Total: -81.88 2.70 -79.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263999282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.931 kcal (2) G-P(sol) polarization free energy of solvation -81.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds