Wall clock time and date at job start Wed Apr 1 2020 03:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.45960 * 2 1 4 4 C 1.53042 * 109.45803 * 240.03904 * 2 1 3 5 5 C 1.53624 * 109.24126 * 178.49278 * 4 2 1 6 6 N 1.46925 * 108.54078 * 54.85607 * 5 4 2 7 7 C 1.34781 * 120.62686 * 126.36849 * 6 5 4 8 8 O 1.21519 * 120.00095 * 188.05969 * 7 6 5 9 9 C 1.48174 * 120.00177 * 8.06171 * 7 6 5 10 10 C 1.39307 * 119.72372 * 190.01412 * 9 7 6 11 11 C 1.38586 * 119.05999 * 180.02562 * 10 9 7 12 12 C 1.38632 * 118.48727 * 359.97438 * 11 10 9 13 13 C 1.50694 * 120.32534 * 180.02562 * 12 11 10 14 14 C 1.53002 * 117.50179 * 171.25112 * 13 12 11 15 15 C 1.52993 * 117.50077 * 239.91489 * 13 12 11 16 16 C 1.38564 * 119.35304 * 0.27409 * 12 11 10 17 17 N 1.31526 * 120.89596 * 359.45564 * 16 12 11 18 18 C 1.46924 * 118.74065 * 306.09648 * 6 5 4 19 19 H 1.09000 * 109.58720 * 293.92279 * 18 6 5 20 20 C 1.53004 * 109.58383 * 173.64839 * 18 6 5 21 21 N 1.46493 * 109.47410 * 70.05660 * 20 18 6 22 22 C 1.36938 * 120.00199 * 174.68325 * 21 20 18 23 23 H 1.07996 * 119.99707 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00156 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00213 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00143 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47001 * 60.00023 * 26 24 22 28 28 H 1.48498 * 109.47265 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47224 * 299.99968 * 26 24 22 30 30 C 1.53043 * 109.45750 * 119.97671 * 2 1 3 31 31 H 1.09000 * 109.47192 * 300.03215 * 1 2 3 32 32 H 1.09006 * 109.47109 * 60.02367 * 1 2 3 33 33 H 1.09005 * 109.47611 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.50211 * 298.57228 * 4 2 1 35 35 H 1.08997 * 109.49497 * 58.63744 * 4 2 1 36 36 H 1.09006 * 109.73896 * 295.12482 * 5 4 2 37 37 H 1.09000 * 109.66782 * 174.55292 * 5 4 2 38 38 H 1.07995 * 120.46893 * 359.97438 * 10 9 7 39 39 H 1.07991 * 120.75691 * 179.97438 * 11 10 9 40 40 H 1.09009 * 115.54631 * 25.58418 * 13 12 11 41 41 H 1.08992 * 117.49867 * 215.00478 * 14 13 12 42 42 H 1.09003 * 117.49712 * 0.02774 * 14 13 12 43 43 H 1.09001 * 117.49897 * 359.97438 * 15 13 12 44 44 H 1.09002 * 117.49767 * 144.97471 * 15 13 12 45 45 H 1.07992 * 119.55127 * 179.72079 * 16 12 11 46 46 H 1.09000 * 109.46613 * 190.05302 * 20 18 6 47 47 H 1.09003 * 109.47407 * 310.04992 * 20 18 6 48 48 H 0.97003 * 119.99968 * 354.67884 * 21 20 18 49 49 H 0.96993 * 120.00778 * 180.02562 * 25 24 22 50 50 H 1.09002 * 109.49786 * 61.42673 * 30 2 1 51 51 H 1.09001 * 109.49689 * 301.33368 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7207 -1.2502 5 6 3.5756 -0.6848 -1.2643 6 7 4.0677 -1.2489 -0.0001 7 6 4.9619 -2.2574 -0.0003 8 8 5.2510 -2.8133 1.0409 9 6 5.5926 -2.6883 -1.2700 10 6 6.3507 -3.8565 -1.3031 11 6 6.9348 -4.2463 -2.4979 12 6 6.7398 -3.4541 -3.6187 13 6 7.3553 -3.8392 -4.9392 14 6 6.9356 -3.0397 -6.1743 15 6 8.3327 -2.8508 -5.5781 16 6 5.9776 -2.3018 -3.5117 17 7 5.4304 -1.9580 -2.3662 18 6 3.5712 -0.6889 1.2642 19 1 3.9164 0.3398 1.3687 20 6 4.0910 -1.5256 2.4349 21 7 5.5333 -1.3157 2.5828 22 6 6.2026 -1.8786 3.6366 23 1 5.6672 -2.4768 4.3588 24 6 7.5694 -1.6802 3.7764 25 7 8.2219 -0.9506 2.8964 26 14 8.4823 -2.4474 5.2142 27 1 8.3378 -3.9244 5.1609 28 1 9.9208 -2.0871 5.1362 29 1 7.9139 -1.9400 6.4889 30 6 2.0398 -0.7210 1.2500 31 1 -0.3633 0.5143 0.8897 32 1 -0.3634 0.5135 -0.8902 33 1 -0.3634 -1.0277 0.0005 34 1 1.6977 -1.7555 -1.2386 35 1 1.6568 -0.2208 -2.1398 36 1 3.9189 0.3451 -1.3630 37 1 3.9487 -1.2781 -2.0991 38 1 6.4821 -4.4495 -0.4102 39 1 7.5284 -5.1467 -2.5545 40 1 7.5557 -4.9024 -5.0721 41 1 6.8600 -3.5768 -7.1197 42 1 6.2146 -2.2347 -6.0317 43 1 8.5303 -1.9216 -5.0435 44 1 9.1765 -3.2636 -6.1311 45 1 5.8274 -1.6799 -4.3817 46 1 3.5840 -1.2228 3.3511 47 1 3.8951 -2.5805 2.2429 48 1 6.0142 -0.7781 1.9342 49 1 9.1770 -0.8123 2.9938 50 1 1.6976 -1.7559 1.2381 51 1 1.6572 -0.2211 2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264565569.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:44 Heat of formation + Delta-G solvation = 67.210653 kcal Electronic energy + Delta-G solvation = -31197.892155 eV Core-core repulsion = 27292.415899 eV Total energy + Delta-G solvation = -3905.476256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.05822 -40.81722 -38.57689 -37.97896 -36.32898 -34.91860 -33.94324 -33.31042 -31.85597 -31.45385 -29.24113 -27.17665 -26.17397 -25.03312 -24.50871 -23.99312 -23.16603 -23.09222 -21.69274 -21.20791 -20.56384 -19.18542 -18.08419 -18.04035 -16.93832 -16.77352 -16.36624 -16.24863 -16.17321 -15.78088 -15.54710 -15.41222 -15.05880 -14.99898 -14.83206 -14.59618 -14.39795 -14.19231 -13.87522 -13.64555 -13.51052 -13.10754 -12.80109 -12.78356 -12.72630 -12.67134 -12.52952 -12.30295 -12.18150 -12.07756 -11.95826 -11.86388 -11.71420 -11.45127 -11.26483 -11.23028 -10.94312 -10.76114 -10.31949 -9.81006 -9.73840 -9.40595 -8.68726 -7.85974 -5.06821 -0.34630 0.20207 1.41520 1.46682 1.52215 1.86397 2.10531 2.59774 2.74537 3.06224 3.18150 3.46838 3.55952 3.65093 3.75546 3.85111 3.89554 3.94254 3.97435 4.04009 4.14163 4.16102 4.26566 4.33945 4.35834 4.41676 4.49034 4.59795 4.69396 4.79821 4.79987 4.87797 4.88125 4.95194 4.97300 5.03393 5.06582 5.10618 5.13449 5.17506 5.22665 5.25564 5.30004 5.32670 5.37535 5.43717 5.50313 5.58016 5.64673 5.97296 6.34366 6.56410 6.74732 7.39013 7.44747 8.18574 8.42717 9.38669 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.007312 B = 0.004559 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3828.262024 B = 6139.651102 C = 9419.326418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.071 0.929 4 C -0.120 4.120 5 C 0.074 3.926 6 N -0.593 5.593 7 C 0.528 3.472 8 O -0.503 6.503 9 C 0.061 3.939 10 C -0.124 4.124 11 C -0.074 4.074 12 C -0.077 4.077 13 C -0.130 4.130 14 C -0.159 4.159 15 C -0.169 4.169 16 C 0.084 3.916 17 N -0.451 5.451 18 C 0.144 3.856 19 H 0.058 0.942 20 C 0.160 3.840 21 N -0.708 5.708 22 C -0.215 4.215 23 H 0.064 0.936 24 C -0.084 4.084 25 N -0.975 5.975 26 Si 0.970 3.030 27 H -0.285 1.285 28 H -0.294 1.294 29 H -0.277 1.277 30 C -0.110 4.110 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.146 0.854 38 H 0.125 0.875 39 H 0.165 0.835 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.191 0.809 46 H 0.015 0.985 47 H 0.029 0.971 48 H 0.364 0.636 49 H 0.245 0.755 50 H 0.060 0.940 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.045 -2.306 -23.071 25.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.090 0.910 4 C -0.158 4.158 5 C -0.047 4.047 6 N -0.328 5.328 7 C 0.313 3.687 8 O -0.376 6.376 9 C -0.075 4.075 10 C -0.145 4.145 11 C -0.100 4.100 12 C -0.079 4.079 13 C -0.148 4.148 14 C -0.196 4.196 15 C -0.206 4.206 16 C -0.075 4.075 17 N -0.163 5.163 18 C 0.041 3.959 19 H 0.076 0.924 20 C 0.034 3.966 21 N -0.348 5.348 22 C -0.347 4.347 23 H 0.082 0.918 24 C -0.274 4.274 25 N -0.628 5.628 26 Si 0.800 3.200 27 H -0.212 1.212 28 H -0.220 1.220 29 H -0.203 1.203 30 C -0.148 4.148 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.162 0.838 38 H 0.143 0.857 39 H 0.182 0.818 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.124 0.876 43 H 0.105 0.895 44 H 0.132 0.868 45 H 0.208 0.792 46 H 0.032 0.968 47 H 0.047 0.953 48 H 0.196 0.804 49 H 0.054 0.946 50 H 0.079 0.921 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.410 -1.965 -22.210 25.046 hybrid contribution 1.665 -0.915 1.180 2.236 sum -9.745 -2.880 -21.030 23.356 Atomic orbital electron populations 1.21758 0.93363 1.01950 1.02462 1.21131 0.96808 0.99192 0.93697 0.91023 1.22057 0.94412 1.00698 0.98632 1.23097 0.94309 1.00192 0.87107 1.47796 1.42715 1.34516 1.07757 1.18460 0.80515 0.82150 0.87541 1.91093 1.61181 1.54361 1.30943 1.21249 0.99240 0.94146 0.92866 1.22087 0.96185 0.96433 0.99836 1.21672 0.97108 1.00724 0.90486 1.20583 0.96723 0.95062 0.95565 1.21031 1.05176 0.99300 0.89314 1.23226 0.97623 1.02403 0.96327 1.23137 0.94430 1.00006 1.03052 1.23380 0.93190 0.95183 0.95731 1.67546 1.19611 1.30018 0.99079 1.21435 0.95274 0.96123 0.83085 0.92440 1.21002 0.84428 0.97368 0.93821 1.42316 1.03766 1.59670 1.29093 1.19476 0.91334 1.22582 1.01324 0.91850 1.25411 0.97243 1.02835 1.01937 1.69834 1.07549 1.46382 1.39067 0.85245 0.77282 0.77962 0.79542 1.21204 1.22036 1.20320 1.21890 0.91726 1.01428 0.99787 0.92330 0.91217 0.92876 0.92630 0.88569 0.92616 0.83763 0.85680 0.81776 0.85128 0.86324 0.87553 0.89455 0.86825 0.79211 0.96774 0.95330 0.80445 0.94629 0.92147 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.19 71.98 0.66 -1.64 16 2 C -0.09 -1.95 2.68 -10.77 -0.03 -1.98 16 3 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.12 -2.59 5.38 30.82 0.17 -2.42 16 5 C 0.07 2.09 5.89 86.51 0.51 2.60 16 6 N -0.59 -21.96 2.97 -797.20 -2.36 -24.33 16 7 C 0.53 22.96 7.02 86.88 0.61 23.57 16 8 O -0.50 -26.60 10.35 -3.77 -0.04 -26.64 16 9 C 0.06 2.24 6.57 41.91 0.28 2.52 16 10 C -0.12 -4.25 9.63 22.61 0.22 -4.03 16 11 C -0.07 -1.84 9.88 22.45 0.22 -1.62 16 12 C -0.08 -1.59 5.63 -19.69 -0.11 -1.70 16 13 C -0.13 -1.73 6.06 -11.54 -0.07 -1.80 16 14 C -0.16 -1.46 9.87 30.62 0.30 -1.16 16 15 C -0.17 -2.01 10.17 30.62 0.31 -1.70 16 16 C 0.08 1.87 10.46 84.82 0.89 2.75 16 17 N -0.45 -13.37 6.16 -184.91 -1.14 -14.51 16 18 C 0.14 5.44 2.92 44.97 0.13 5.57 16 19 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 20 C 0.16 7.63 4.87 86.38 0.42 8.05 16 21 N -0.71 -41.23 3.30 -343.46 -1.13 -42.36 16 22 C -0.21 -13.51 9.78 84.03 0.82 -12.69 16 23 H 0.06 3.90 7.83 -2.91 -0.02 3.88 16 24 C -0.08 -5.30 5.50 84.86 0.47 -4.83 16 25 N -0.98 -65.38 13.06 21.65 0.28 -65.10 16 26 Si 0.97 50.83 29.55 68.60 2.03 52.86 16 27 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 28 H -0.29 -15.29 7.11 99.48 0.71 -14.58 16 29 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 30 C -0.11 -3.07 4.64 30.67 0.14 -2.93 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.05 0.89 8.14 -2.38 -0.02 0.88 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.55 8.14 -2.38 -0.02 1.54 16 37 H 0.15 3.98 4.07 -61.81 -0.25 3.73 16 38 H 0.13 4.76 7.68 -2.91 -0.02 4.74 16 39 H 0.16 3.05 8.06 -2.92 -0.02 3.02 16 40 H 0.13 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.11 0.85 6.20 -2.39 -0.01 0.84 16 43 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.19 2.78 6.04 -2.91 -0.02 2.76 16 46 H 0.01 0.68 8.12 -2.39 -0.02 0.66 16 47 H 0.03 1.49 6.17 -2.39 -0.01 1.47 16 48 H 0.36 22.87 7.13 -92.71 -0.66 22.21 16 49 H 0.25 15.91 8.31 -92.71 -0.77 15.14 16 50 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -81.26 396.44 3.60 -77.66 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: 0.03 Total: 35.88 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 5.94 Total: 6.55 kcal Atomic # 7 Polarization: -141.95 SS G_CDS: -4.35 Total: -146.30 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.04 Total: -26.64 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.03 Total: 52.86 kcal Total: -81.26 3.60 -77.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264565569.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.869 kcal (2) G-P(sol) polarization free energy of solvation -81.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds