Wall clock time and date at job start Wed Apr 1 2020 02:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46938 * 2 1 4 4 N 1.46505 * 109.46563 * 179.97438 * 3 2 1 5 5 C 1.36939 * 120.00222 * 275.30689 * 4 3 2 6 6 H 1.08000 * 119.99550 * 37.58185 * 5 4 3 7 7 C 1.38804 * 119.99974 * 217.57974 * 5 4 3 8 8 N 1.31624 * 120.00276 * 21.42840 * 7 5 4 9 9 Si 1.86805 * 119.99998 * 201.42166 * 7 5 4 10 10 H 1.48495 * 109.46924 * 60.00175 * 9 7 5 11 11 H 1.48496 * 109.47160 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47035 * 300.00490 * 9 7 5 13 13 C 1.46499 * 119.99904 * 95.31041 * 4 3 2 14 14 C 1.53003 * 109.47245 * 270.00085 * 13 4 3 15 15 N 1.46499 * 109.47245 * 179.97438 * 14 13 4 16 16 C 1.34772 * 119.99821 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00518 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99963 * 180.02562 * 16 15 14 19 19 C 1.53003 * 109.47388 * 180.02562 * 18 16 15 20 20 C 1.50694 * 109.47160 * 180.02562 * 19 18 16 21 21 C 1.38828 * 119.73446 * 269.71936 * 20 19 18 22 22 C 1.37754 * 120.66984 * 179.76007 * 21 20 19 23 23 C 1.39120 * 119.77339 * 0.51589 * 22 21 20 24 24 N 1.37695 * 133.50771 * 179.76937 * 23 22 21 25 25 H 0.96994 * 125.06049 * 0.02562 * 24 23 22 26 26 C 1.36834 * 109.87445 * 179.97438 * 24 23 22 27 27 C 1.34234 * 109.93120 * 0.02562 * 26 24 23 28 28 C 1.40669 * 119.33839 * 359.74416 * 23 22 21 29 29 C 1.36626 * 119.74079 * 89.99600 * 20 19 18 30 30 H 1.08998 * 109.47411 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46724 * 300.00399 * 1 2 3 32 32 H 1.09000 * 109.47022 * 59.99958 * 1 2 3 33 33 H 1.08995 * 109.46829 * 239.99620 * 2 1 3 34 34 H 1.09000 * 109.47022 * 120.00042 * 2 1 3 35 35 H 1.08996 * 109.46969 * 60.00388 * 3 2 1 36 36 H 1.09000 * 109.47298 * 299.99873 * 3 2 1 37 37 H 0.96994 * 120.00050 * 180.02562 * 8 7 5 38 38 H 1.09002 * 109.47255 * 149.99706 * 13 4 3 39 39 H 1.08999 * 109.47279 * 29.99658 * 13 4 3 40 40 H 1.09002 * 109.47303 * 59.99651 * 14 13 4 41 41 H 1.09008 * 109.46738 * 299.99961 * 14 13 4 42 42 H 0.96994 * 119.99985 * 359.97438 * 15 14 13 43 43 H 1.08999 * 109.47119 * 299.99979 * 18 16 15 44 44 H 1.09002 * 109.47272 * 59.99940 * 18 16 15 45 45 H 1.09008 * 109.46738 * 299.99852 * 19 18 16 46 46 H 1.09002 * 109.47303 * 59.99542 * 19 18 16 47 47 H 1.08002 * 119.66994 * 0.02718 * 21 20 19 48 48 H 1.07993 * 120.11348 * 180.28191 * 22 21 20 49 49 H 1.07998 * 125.02993 * 179.97438 * 26 24 23 50 50 H 1.07993 * 126.50465 * 180.02562 * 27 26 24 51 51 H 1.08001 * 120.11168 * 359.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1893 1.3329 1.1817 6 1 3.8170 0.6875 1.9636 7 6 5.3613 2.0513 1.3741 8 7 5.6021 3.1239 0.6502 9 14 6.5968 1.4959 2.6604 10 1 7.0656 0.1246 2.3368 11 1 7.7543 2.4261 2.6691 12 1 5.9523 1.4959 3.9982 13 6 4.2381 1.5596 -1.2624 14 6 4.4932 0.1641 -1.8354 15 7 5.2257 0.2813 -3.0987 16 6 5.5632 -0.8270 -3.7873 17 8 5.2601 -1.9214 -3.3614 18 6 6.3172 -0.7065 -5.0865 19 6 6.5722 -2.1020 -5.6596 20 6 7.3267 -1.9815 -6.9585 21 6 6.6280 -1.8762 -8.1535 22 6 7.2981 -1.7602 -9.3514 23 6 8.6892 -1.7589 -9.3675 24 7 9.6255 -1.6657 -10.3728 25 1 9.4223 -1.5775 -11.3171 26 6 10.8854 -1.7147 -9.8411 27 6 10.8142 -1.8390 -8.5064 28 6 9.3926 -1.8713 -8.1545 29 6 8.6929 -1.9824 -6.9513 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 6.4213 3.6256 0.7844 38 1 5.1904 2.0592 -1.0848 39 1 3.6493 2.1414 -1.9716 40 1 3.5408 -0.3355 -2.0130 41 1 5.0820 -0.4178 -1.1262 42 1 5.4678 1.1565 -3.4395 43 1 5.7282 -0.1250 -5.7958 44 1 7.2694 -0.2066 -4.9090 45 1 7.1610 -2.6840 -4.9504 46 1 5.6198 -2.6016 -5.8372 47 1 5.5480 -1.8810 -8.1435 48 1 6.7455 -1.6742 -10.2753 49 1 11.8012 -1.6622 -10.4110 50 1 11.6470 -1.9020 -7.8218 51 1 9.2298 -2.0687 -6.0181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267314619.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:37 Heat of formation + Delta-G solvation = 0.584353 kcal Electronic energy + Delta-G solvation = -28539.174524 eV Core-core repulsion = 24630.809135 eV Total energy + Delta-G solvation = -3908.365389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.06253 -40.70206 -38.49439 -38.14663 -35.69449 -34.59760 -34.17033 -32.75766 -32.57492 -30.46856 -29.60553 -29.10832 -27.33748 -25.84125 -24.58823 -23.46745 -22.57431 -22.01206 -21.85190 -21.36197 -20.95751 -18.91160 -18.75333 -17.89570 -17.08124 -17.02555 -16.80910 -16.57798 -16.05014 -15.79151 -15.66001 -15.33871 -15.18607 -14.83520 -14.73433 -14.57172 -14.42814 -14.24211 -13.95614 -13.65890 -13.45325 -13.38813 -13.31815 -13.05429 -12.90436 -12.63097 -12.52094 -12.37650 -12.21604 -12.10094 -12.04058 -12.01605 -11.86808 -11.66986 -11.63537 -11.32367 -10.85322 -10.63888 -10.52535 -9.97295 -9.02556 -8.59303 -8.57959 -7.85535 -5.48456 0.24815 0.66216 1.43919 1.47498 1.53590 1.71868 1.87238 2.28435 2.33547 2.51466 2.96285 3.21858 3.66487 3.80147 3.86534 4.03862 4.12568 4.20936 4.22682 4.29400 4.34420 4.38782 4.40951 4.50098 4.57117 4.58531 4.68106 4.72112 4.75158 4.77455 4.86983 4.95815 4.99525 5.01236 5.10662 5.17632 5.23806 5.24064 5.25069 5.27472 5.43977 5.48480 5.51799 5.63245 5.66406 5.75610 5.79677 5.85937 5.86547 6.26732 6.45074 6.67420 6.77711 7.14968 7.34774 7.83214 8.35290 9.09917 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.001970 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.926107 B =14213.278867 C =15670.593144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.270 4.270 6 H 0.050 0.950 7 C -0.029 4.029 8 N -0.910 5.910 9 Si 0.950 3.050 10 H -0.287 1.287 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.145 3.855 14 C 0.120 3.880 15 N -0.716 5.716 16 C 0.504 3.496 17 O -0.593 6.593 18 C -0.121 4.121 19 C -0.052 4.052 20 C -0.109 4.109 21 C -0.102 4.102 22 C -0.128 4.128 23 C 0.072 3.928 24 N -0.590 5.590 25 H 0.429 0.571 26 C 0.065 3.935 27 C -0.239 4.239 28 C -0.134 4.134 29 C -0.086 4.086 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.050 0.950 37 H 0.254 0.746 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.046 0.954 41 H 0.025 0.975 42 H 0.412 0.588 43 H 0.119 0.881 44 H 0.107 0.893 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.141 0.859 48 H 0.143 0.857 49 H 0.209 0.791 50 H 0.152 0.848 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.851 -6.549 -25.488 26.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.400 4.400 6 H 0.068 0.932 7 C -0.227 4.227 8 N -0.553 5.553 9 Si 0.779 3.221 10 H -0.213 1.213 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.018 3.982 14 C -0.007 4.007 15 N -0.368 5.368 16 C 0.292 3.708 17 O -0.474 6.474 18 C -0.161 4.161 19 C -0.090 4.090 20 C -0.110 4.110 21 C -0.121 4.121 22 C -0.148 4.148 23 C -0.035 4.035 24 N -0.194 5.194 25 H 0.269 0.731 26 C -0.062 4.062 27 C -0.264 4.264 28 C -0.139 4.139 29 C -0.105 4.105 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.248 0.752 43 H 0.137 0.863 44 H 0.125 0.875 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.159 0.841 48 H 0.161 0.839 49 H 0.225 0.775 50 H 0.170 0.830 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.749 -7.133 -25.286 26.895 hybrid contribution 0.838 0.107 0.672 1.079 sum 6.587 -7.026 -24.614 26.431 Atomic orbital electron populations 1.21653 0.94191 1.01775 1.02017 1.22019 0.96469 0.98800 1.00201 1.21047 0.83363 0.94496 0.99061 1.43834 1.00848 1.85094 1.01985 1.19104 1.06326 1.19875 0.94728 0.93188 1.25753 1.02109 0.94740 1.00080 1.70074 1.25939 1.15468 1.43828 0.85621 0.79147 0.77408 0.79964 1.21334 1.21325 1.20006 1.20928 0.99163 0.91961 0.86167 1.21874 0.94276 1.00723 0.83805 1.46038 1.57621 1.09805 1.23341 1.21458 0.78929 0.83509 0.86923 1.90661 1.56959 1.28290 1.71514 1.21654 1.01740 0.99983 0.92682 1.20144 1.00181 0.95517 0.93199 1.19321 0.93230 1.03535 0.94925 1.20957 1.00459 0.99855 0.90861 1.20277 0.89941 1.05190 0.99411 1.18511 0.91641 1.04803 0.88582 1.41863 1.04459 1.64151 1.08940 0.73123 1.22410 0.88491 1.01092 0.94165 1.22005 0.94281 1.14164 0.95964 1.19572 0.94618 1.06662 0.93021 1.20297 0.93526 0.99949 0.96720 0.92287 0.92586 0.92034 0.93685 0.94388 0.94660 0.93201 0.93676 0.90880 0.93720 0.93570 0.95631 0.75192 0.86321 0.87525 0.92084 0.90899 0.84114 0.83896 0.77481 0.83006 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.91 71.98 0.71 -3.17 16 2 C -0.14 -4.96 6.23 30.60 0.19 -4.77 16 3 C 0.15 6.06 5.72 86.38 0.49 6.56 16 4 N -0.60 -29.33 2.43 -701.99 -1.71 -31.04 16 5 C -0.27 -14.79 9.45 84.03 0.79 -14.00 16 6 H 0.05 2.79 7.92 -2.91 -0.02 2.77 16 7 C -0.03 -1.58 4.95 84.86 0.42 -1.16 16 8 N -0.91 -51.35 11.47 21.65 0.25 -51.10 16 9 Si 0.95 44.84 29.61 68.60 2.03 46.87 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 C 0.14 6.51 5.45 86.38 0.47 6.98 16 14 C 0.12 5.00 6.00 86.38 0.52 5.52 16 15 N -0.72 -23.79 5.56 -463.04 -2.57 -26.36 16 16 C 0.50 16.49 7.83 87.66 0.69 17.17 16 17 O -0.59 -24.74 15.98 -3.05 -0.05 -24.79 16 18 C -0.12 -2.73 5.68 29.85 0.17 -2.56 16 19 C -0.05 -1.24 4.62 29.85 0.14 -1.10 16 20 C -0.11 -2.34 5.10 -20.10 -0.10 -2.44 16 21 C -0.10 -1.87 9.66 22.30 0.22 -1.66 16 22 C -0.13 -2.12 10.08 22.37 0.23 -1.89 16 23 C 0.07 1.32 7.28 39.03 0.28 1.60 16 24 N -0.59 -6.96 6.07 -187.61 -1.14 -8.10 16 25 H 0.43 2.16 8.96 -92.71 -0.83 1.33 16 26 C 0.07 0.72 11.82 83.00 0.98 1.70 16 27 C -0.24 -4.09 11.08 23.51 0.26 -3.83 16 28 C -0.13 -2.90 6.37 -20.20 -0.13 -3.03 16 29 C -0.09 -1.96 9.67 22.23 0.22 -1.74 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.04 1.71 6.64 -2.39 -0.02 1.69 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.03 1.52 8.08 -2.39 -0.02 1.50 16 36 H 0.05 1.90 7.83 -2.39 -0.02 1.88 16 37 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 38 H 0.07 3.71 5.52 -2.39 -0.01 3.70 16 39 H 0.04 1.83 7.86 -2.39 -0.02 1.81 16 40 H 0.05 1.96 6.64 -2.39 -0.02 1.95 16 41 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.41 11.21 8.47 -92.71 -0.79 10.42 16 43 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.06 1.63 8.03 -2.38 -0.02 1.61 16 46 H 0.07 1.78 8.04 -2.39 -0.02 1.76 16 47 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 48 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 49 H 0.21 0.50 8.06 -2.91 -0.02 0.48 16 50 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 51 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -72.81 418.92 2.67 -70.14 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: -0.68 Total: 26.20 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 6.54 Total: -1.82 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -5.17 Total: -116.60 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.79 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -72.81 2.67 -70.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267314619.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.721 kcal (2) G-P(sol) polarization free energy of solvation -72.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds