Wall clock time and date at job start Wed Apr 1 2020 02:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46862 * 2 1 4 4 N 1.46905 * 109.47372 * 179.97438 * 3 2 1 5 5 C 1.46898 * 110.99763 * 59.16216 * 4 3 2 6 6 C 1.52996 * 109.47241 * 66.04779 * 5 4 3 7 7 N 1.46505 * 109.47116 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99793 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99801 * 0.02562 * 8 7 6 10 10 C 1.50693 * 120.00171 * 180.02562 * 8 7 6 11 11 H 1.09006 * 110.43408 * 300.70417 * 10 8 7 12 12 C 1.54893 * 110.48456 * 63.24349 * 10 8 7 13 13 C 1.55030 * 102.68226 * 156.51817 * 12 10 8 14 14 C 1.54263 * 104.28305 * 322.23804 * 13 12 10 15 15 H 1.08999 * 110.03811 * 142.80022 * 14 13 12 16 16 F 1.39899 * 110.07101 * 264.21151 * 14 13 12 17 17 C 1.53876 * 106.59892 * 23.51387 * 14 13 12 18 18 C 1.46900 * 110.99744 * 295.21266 * 4 3 2 19 19 C 1.50700 * 109.47118 * 288.23595 * 18 4 3 20 20 O 1.21294 * 120.00044 * 354.29872 * 19 18 4 21 21 N 1.34776 * 120.00131 * 174.29884 * 19 18 4 22 22 C 1.37094 * 120.00333 * 179.97438 * 21 19 18 23 23 H 1.08012 * 119.99843 * 0.02562 * 22 21 19 24 24 C 1.38946 * 120.00574 * 179.97438 * 22 21 19 25 25 N 1.31408 * 119.99869 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00423 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46636 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.46963 * 119.99962 * 26 24 22 29 29 H 1.48500 * 109.47001 * 240.00583 * 26 24 22 30 30 H 1.08999 * 109.46935 * 299.99251 * 1 2 3 31 31 H 1.08997 * 109.47226 * 60.00039 * 1 2 3 32 32 H 1.09000 * 109.46664 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47181 * 240.00257 * 2 1 3 34 34 H 1.08994 * 109.47356 * 120.00476 * 2 1 3 35 35 H 1.09009 * 109.47239 * 59.93684 * 3 2 1 36 36 H 1.09002 * 109.47876 * 299.93591 * 3 2 1 37 37 H 1.08997 * 109.47278 * 186.05155 * 5 4 3 38 38 H 1.09005 * 109.47262 * 306.05047 * 5 4 3 39 39 H 1.08997 * 109.47292 * 300.00368 * 6 5 4 40 40 H 1.09000 * 109.47038 * 60.00340 * 6 5 4 41 41 H 0.96997 * 120.00015 * 0.02562 * 7 6 5 42 42 H 1.08999 * 110.75538 * 274.93728 * 12 10 8 43 43 H 1.08996 * 110.75429 * 38.30863 * 12 10 8 44 44 H 1.09003 * 110.52462 * 203.48766 * 13 12 10 45 45 H 1.09004 * 110.47794 * 80.95641 * 13 12 10 46 46 H 1.08998 * 110.03487 * 240.72017 * 17 14 13 47 47 H 1.09000 * 110.03220 * 119.28378 * 17 14 13 48 48 H 1.09002 * 109.47567 * 48.23537 * 18 4 3 49 49 H 1.09006 * 109.47336 * 168.23440 * 18 4 3 50 50 H 0.96999 * 120.00144 * 0.02562 * 21 19 18 51 51 H 0.96998 * 120.00628 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0360 0.7394 -1.1766 6 6 3.6725 1.5194 -2.4416 7 7 4.1985 0.8185 -3.6156 8 6 3.9977 1.3244 -4.8486 9 8 3.3820 2.3602 -4.9861 10 6 4.5383 0.6032 -6.0562 11 1 5.6217 0.5047 -5.9874 12 6 3.8753 -0.7895 -6.1976 13 6 4.0472 -1.0966 -7.7075 14 6 3.8327 0.2653 -8.3997 15 1 4.5090 0.3633 -9.2488 16 9 2.5060 0.3824 -8.8280 17 6 4.1449 1.3460 -7.3498 18 6 4.0349 0.8586 1.2417 19 6 3.7993 1.8120 2.3848 20 8 3.3423 2.9149 2.1702 21 7 4.0963 1.4392 3.6454 22 6 3.8824 2.3067 4.6852 23 1 3.4755 3.2888 4.4942 24 6 4.1881 1.9223 5.9850 25 7 4.6828 0.7273 6.2175 26 14 3.8960 3.1041 7.4019 27 1 3.3371 4.3762 6.8780 28 1 2.9373 2.4994 8.3611 29 1 5.1821 3.3764 8.0925 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6757 1.9567 0.8895 36 1 1.6776 1.9561 -0.8905 37 1 5.1202 0.6604 -1.0975 38 1 3.6017 -0.2590 -1.2281 39 1 2.5883 1.5985 -2.5208 40 1 4.1068 2.5179 -2.3902 41 1 4.6907 -0.0101 -3.5056 42 1 4.3961 -1.5288 -5.5891 43 1 2.8193 -0.7434 -5.9317 44 1 3.2978 -1.8153 -8.0390 45 1 5.0504 -1.4727 -7.9083 46 1 3.2626 1.9612 -7.1733 47 1 4.9728 1.9684 -7.6894 48 1 3.5261 -0.0839 1.4440 49 1 5.1045 0.6781 1.1337 50 1 4.4621 0.5574 3.8170 51 1 4.8966 0.4589 7.1248 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267317216.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:02 Heat of formation + Delta-G solvation = -135.383654 kcal Electronic energy + Delta-G solvation = -30108.963746 eV Core-core repulsion = 25763.933117 eV Total energy + Delta-G solvation = -4345.030629 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -47.95442 -40.30758 -39.02471 -37.41467 -36.94896 -34.94862 -33.85953 -32.67803 -31.22588 -30.29453 -29.34932 -28.52002 -27.13174 -25.27534 -23.99327 -22.82484 -22.27856 -21.10346 -20.48835 -19.87808 -18.93747 -17.83172 -17.78996 -17.05228 -16.42315 -16.18640 -15.88573 -15.77229 -15.41891 -15.29088 -15.09419 -14.52387 -14.31102 -14.22893 -13.84239 -13.73980 -13.65199 -13.51240 -13.27656 -13.03742 -12.66459 -12.36042 -12.05247 -11.97558 -11.75867 -11.62995 -11.56597 -11.49905 -11.46470 -11.39265 -11.31360 -11.12475 -11.10381 -11.08487 -10.95447 -10.33842 -10.30362 -10.21455 -10.01300 -9.48179 -9.22255 -8.46413 -7.95747 -7.85489 -6.41062 -3.81533 2.40705 2.83163 3.16723 3.27281 3.34725 3.78036 3.84404 3.92576 4.02960 4.20225 4.28441 4.34910 4.58010 4.69208 4.80273 4.81871 4.89919 4.92797 4.97443 5.01525 5.09215 5.10182 5.20443 5.25732 5.29800 5.35438 5.36004 5.42046 5.59461 5.61851 5.68262 5.70107 5.78655 5.85952 5.89157 5.90823 5.96869 6.03257 6.18179 6.20533 6.28149 6.33172 6.53909 7.18041 7.26572 7.31191 7.56284 8.00318 8.07801 8.63287 9.19789 9.55973 10.08272 10.76884 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.001765 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.700165 B =15860.786952 C =16131.804180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.166 4.166 3 C 0.052 3.948 4 N -0.507 5.507 5 C 0.040 3.960 6 C 0.121 3.879 7 N -0.727 5.727 8 C 0.519 3.481 9 O -0.535 6.535 10 C -0.113 4.113 11 H 0.106 0.894 12 C -0.115 4.115 13 C -0.149 4.149 14 C 0.085 3.915 15 H 0.088 0.912 16 F -0.211 7.211 17 C -0.140 4.140 18 C 0.043 3.957 19 C 0.445 3.555 20 O -0.574 6.574 21 N -0.567 5.567 22 C -0.296 4.296 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.399 0.601 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.054 0.946 49 H 0.087 0.913 50 H 0.391 0.609 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.382 -9.774 -25.416 27.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C -0.076 4.076 4 N -0.230 5.230 5 C -0.089 4.089 6 C -0.002 4.002 7 N -0.379 5.379 8 C 0.304 3.696 9 O -0.411 6.411 10 C -0.135 4.135 11 H 0.124 0.876 12 C -0.153 4.153 13 C -0.187 4.187 14 C 0.048 3.952 15 H 0.106 0.894 16 F -0.192 7.192 17 C -0.178 4.178 18 C -0.089 4.089 19 C 0.230 3.770 20 O -0.457 6.457 21 N -0.204 5.204 22 C -0.426 4.426 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.545 5.545 26 Si 0.755 3.245 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.232 0.768 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.119 0.881 47 H 0.102 0.898 48 H 0.071 0.929 49 H 0.105 0.895 50 H 0.224 0.776 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.809 -7.820 -25.490 26.675 hybrid contribution 0.175 -1.364 1.077 1.747 sum 0.984 -9.184 -24.413 26.102 Atomic orbital electron populations 1.21645 0.95408 1.01262 1.02026 1.22220 0.96926 0.99685 1.01658 1.22371 0.86365 0.94746 1.04105 1.61668 1.08014 1.53134 1.00139 1.22286 1.00575 0.95600 0.90398 1.21344 0.99589 0.96628 0.82686 1.45923 1.57946 1.27797 1.06192 1.20385 0.79790 0.85206 0.84188 1.90728 1.40694 1.23695 1.85960 1.22146 1.01903 0.96135 0.93283 0.87577 1.22542 1.01749 0.94524 0.96444 1.23007 1.03651 0.96606 0.95428 1.22213 0.79309 0.96145 0.97494 0.89405 1.92841 1.37913 1.97043 1.91417 1.22733 1.04857 0.97756 0.92491 1.21929 1.00570 0.96250 0.90111 1.19726 0.84923 0.88844 0.83493 1.90528 1.48900 1.22382 1.83902 1.41871 1.56826 1.16835 1.04884 1.19743 1.39653 0.98329 0.84857 0.87885 1.25244 0.97156 0.96872 0.98748 1.69614 1.44128 1.18754 1.22001 0.85816 0.77925 0.80207 0.80505 1.19220 1.20817 1.20790 0.92328 0.92880 0.93124 0.92300 0.91676 0.88759 0.90932 0.90392 0.93959 0.91174 0.90265 0.76753 0.90053 0.90432 0.89795 0.89517 0.88072 0.89818 0.92858 0.89488 0.77603 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.34 16 2 C -0.17 -2.10 5.29 -26.73 -0.14 -2.24 16 3 C 0.05 0.80 4.80 -3.82 -0.02 0.78 16 4 N -0.51 -7.93 4.31 -236.07 -1.02 -8.95 16 5 C 0.04 0.45 4.81 -3.83 -0.02 0.43 16 6 C 0.12 1.40 5.60 -4.04 -0.02 1.38 16 7 N -0.73 -6.39 5.52 -60.30 -0.33 -6.73 16 8 C 0.52 5.38 7.14 -10.99 -0.08 5.30 16 9 O -0.53 -8.03 15.44 5.55 0.09 -7.94 16 10 C -0.11 -0.75 3.25 -90.12 -0.29 -1.04 16 11 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 12 C -0.11 -0.60 6.31 -24.66 -0.16 -0.76 16 13 C -0.15 -0.69 6.62 -25.00 -0.17 -0.86 16 14 C 0.08 0.54 4.68 -25.61 -0.12 0.42 16 15 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 16 F -0.21 -2.07 17.05 2.25 0.04 -2.03 16 17 C -0.14 -1.05 6.02 -25.61 -0.15 -1.21 16 18 C 0.04 0.72 5.34 -4.98 -0.03 0.70 16 19 C 0.45 10.30 7.36 -10.99 -0.08 10.22 16 20 O -0.57 -15.40 14.70 5.55 0.08 -15.32 16 21 N -0.57 -14.15 5.29 -10.96 -0.06 -14.20 16 22 C -0.30 -8.20 9.68 -14.94 -0.14 -8.35 16 23 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 24 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 26 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.66 6.26 -51.93 -0.33 0.33 16 34 H 0.06 0.89 6.29 -51.93 -0.33 0.56 16 35 H 0.09 1.79 6.54 -51.92 -0.34 1.45 16 36 H 0.07 1.05 6.51 -51.93 -0.34 0.72 16 37 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16 38 H 0.04 0.42 5.98 -51.93 -0.31 0.11 16 39 H 0.07 0.90 6.57 -51.93 -0.34 0.56 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.40 2.25 8.47 -40.82 -0.35 1.91 16 42 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 44 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 45 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.10 1.07 6.75 -51.93 -0.35 0.72 16 47 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.05 0.82 5.97 -51.93 -0.31 0.51 16 49 H 0.09 1.32 7.81 -51.93 -0.41 0.91 16 50 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 51 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 406.35 15.07 6.12 6.12 Total: -1.00 -34.03 406.35 -8.80 -42.83 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -8.28 Total: 9.97 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -1.15 Total: 3.91 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.68 Total: -53.56 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.17 Total: -23.26 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.03 -8.80 -42.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267317216.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.550 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds