Wall clock time and date at job start Wed Apr 1 2020 02:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.46862 * 2 1 4 4 N 1.46905 * 109.47372 * 179.97438 * 3 2 1 5 5 C 1.46898 * 110.99763 * 59.16216 * 4 3 2 6 6 C 1.52996 * 109.47241 * 66.04779 * 5 4 3 7 7 N 1.46505 * 109.47116 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99793 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99801 * 0.02562 * 8 7 6 10 10 C 1.50693 * 120.00171 * 180.02562 * 8 7 6 11 11 H 1.09006 * 110.43408 * 300.70417 * 10 8 7 12 12 C 1.54893 * 110.48456 * 63.24349 * 10 8 7 13 13 C 1.55030 * 102.68226 * 156.51817 * 12 10 8 14 14 C 1.54263 * 104.28305 * 322.23804 * 13 12 10 15 15 H 1.08999 * 110.03811 * 142.80022 * 14 13 12 16 16 F 1.39899 * 110.07101 * 264.21151 * 14 13 12 17 17 C 1.53876 * 106.59892 * 23.51387 * 14 13 12 18 18 C 1.46900 * 110.99744 * 295.21266 * 4 3 2 19 19 C 1.50700 * 109.47118 * 288.23595 * 18 4 3 20 20 O 1.21294 * 120.00044 * 354.29872 * 19 18 4 21 21 N 1.34776 * 120.00131 * 174.29884 * 19 18 4 22 22 C 1.37094 * 120.00333 * 179.97438 * 21 19 18 23 23 H 1.08012 * 119.99843 * 0.02562 * 22 21 19 24 24 C 1.38946 * 120.00574 * 179.97438 * 22 21 19 25 25 N 1.31408 * 119.99869 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00423 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46636 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.46963 * 119.99962 * 26 24 22 29 29 H 1.48500 * 109.47001 * 240.00583 * 26 24 22 30 30 H 1.08999 * 109.46935 * 299.99251 * 1 2 3 31 31 H 1.08997 * 109.47226 * 60.00039 * 1 2 3 32 32 H 1.09000 * 109.46664 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47181 * 240.00257 * 2 1 3 34 34 H 1.08994 * 109.47356 * 120.00476 * 2 1 3 35 35 H 1.09009 * 109.47239 * 59.93684 * 3 2 1 36 36 H 1.09002 * 109.47876 * 299.93591 * 3 2 1 37 37 H 1.08997 * 109.47278 * 186.05155 * 5 4 3 38 38 H 1.09005 * 109.47262 * 306.05047 * 5 4 3 39 39 H 1.08997 * 109.47292 * 300.00368 * 6 5 4 40 40 H 1.09000 * 109.47038 * 60.00340 * 6 5 4 41 41 H 0.96997 * 120.00015 * 0.02562 * 7 6 5 42 42 H 1.08999 * 110.75538 * 274.93728 * 12 10 8 43 43 H 1.08996 * 110.75429 * 38.30863 * 12 10 8 44 44 H 1.09003 * 110.52462 * 203.48766 * 13 12 10 45 45 H 1.09004 * 110.47794 * 80.95641 * 13 12 10 46 46 H 1.08998 * 110.03487 * 240.72017 * 17 14 13 47 47 H 1.09000 * 110.03220 * 119.28378 * 17 14 13 48 48 H 1.09002 * 109.47567 * 48.23537 * 18 4 3 49 49 H 1.09006 * 109.47336 * 168.23440 * 18 4 3 50 50 H 0.96999 * 120.00144 * 0.02562 * 21 19 18 51 51 H 0.96998 * 120.00628 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0360 0.7394 -1.1766 6 6 3.6725 1.5194 -2.4416 7 7 4.1985 0.8185 -3.6156 8 6 3.9977 1.3244 -4.8486 9 8 3.3820 2.3602 -4.9861 10 6 4.5383 0.6032 -6.0562 11 1 5.6217 0.5047 -5.9874 12 6 3.8753 -0.7895 -6.1976 13 6 4.0472 -1.0966 -7.7075 14 6 3.8327 0.2653 -8.3997 15 1 4.5090 0.3633 -9.2488 16 9 2.5060 0.3824 -8.8280 17 6 4.1449 1.3460 -7.3498 18 6 4.0349 0.8586 1.2417 19 6 3.7993 1.8120 2.3848 20 8 3.3423 2.9149 2.1702 21 7 4.0963 1.4392 3.6454 22 6 3.8824 2.3067 4.6852 23 1 3.4755 3.2888 4.4942 24 6 4.1881 1.9223 5.9850 25 7 4.6828 0.7273 6.2175 26 14 3.8960 3.1041 7.4019 27 1 3.3371 4.3762 6.8780 28 1 2.9373 2.4994 8.3611 29 1 5.1821 3.3764 8.0925 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6757 1.9567 0.8895 36 1 1.6776 1.9561 -0.8905 37 1 5.1202 0.6604 -1.0975 38 1 3.6017 -0.2590 -1.2281 39 1 2.5883 1.5985 -2.5208 40 1 4.1068 2.5179 -2.3902 41 1 4.6907 -0.0101 -3.5056 42 1 4.3961 -1.5288 -5.5891 43 1 2.8193 -0.7434 -5.9317 44 1 3.2978 -1.8153 -8.0390 45 1 5.0504 -1.4727 -7.9083 46 1 3.2626 1.9612 -7.1733 47 1 4.9728 1.9684 -7.6894 48 1 3.5261 -0.0839 1.4440 49 1 5.1045 0.6781 1.1337 50 1 4.4621 0.5574 3.8170 51 1 4.8966 0.4589 7.1248 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267317216.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:01 Heat of formation + Delta-G solvation = -160.571828 kcal Electronic energy + Delta-G solvation = -30110.055987 eV Core-core repulsion = 25763.933117 eV Total energy + Delta-G solvation = -4346.122870 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.58038 -41.13501 -40.50275 -38.80716 -37.67435 -36.02066 -35.75337 -33.76629 -33.22065 -31.21090 -29.91011 -29.32073 -28.33176 -26.85863 -25.38731 -23.80216 -23.02889 -21.65490 -21.57078 -20.87680 -20.45395 -19.76608 -18.50134 -17.70725 -17.55641 -17.35478 -17.12795 -16.69958 -16.50937 -16.32628 -16.12040 -15.84989 -15.64424 -15.17746 -15.11181 -14.89791 -14.84202 -14.35200 -14.27821 -14.15627 -13.96542 -13.50117 -13.19207 -13.05562 -12.92304 -12.74785 -12.66228 -12.52570 -12.48329 -12.40629 -12.37331 -12.19099 -12.14280 -12.07631 -11.94705 -11.55354 -11.54355 -11.53495 -11.33097 -10.87435 -10.29617 -10.11296 -9.97607 -9.11456 -8.45263 -5.93087 1.36336 1.41456 1.55207 1.61360 2.00363 2.10107 2.30846 2.89577 3.21839 3.31816 3.39379 3.45613 3.71587 3.81923 3.93060 3.95877 3.98468 4.10420 4.16909 4.25221 4.27784 4.34204 4.41870 4.43339 4.44624 4.45558 4.48806 4.58457 4.66153 4.67764 4.80471 4.88604 4.92334 4.96016 5.00208 5.04306 5.16088 5.17216 5.20679 5.26064 5.36331 5.38450 5.41993 5.42915 5.88563 6.08312 6.19295 6.55575 6.63895 7.16205 7.26187 7.60360 8.17432 8.72335 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.001765 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.700165 B =15860.786952 C =16131.804180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.156 4.156 3 C 0.057 3.943 4 N -0.533 5.533 5 C 0.049 3.951 6 C 0.130 3.870 7 N -0.709 5.709 8 C 0.513 3.487 9 O -0.591 6.591 10 C -0.104 4.104 11 H 0.142 0.858 12 C -0.112 4.112 13 C -0.142 4.142 14 C 0.075 3.925 15 H 0.113 0.887 16 F -0.236 7.236 17 C -0.145 4.145 18 C 0.057 3.943 19 C 0.441 3.559 20 O -0.617 6.617 21 N -0.576 5.576 22 C -0.329 4.329 23 H 0.075 0.925 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.989 3.011 27 H -0.276 1.276 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.419 0.581 42 H 0.112 0.888 43 H 0.054 0.946 44 H 0.081 0.919 45 H 0.117 0.883 46 H 0.061 0.939 47 H 0.096 0.904 48 H 0.076 0.924 49 H 0.114 0.886 50 H 0.396 0.604 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.193 -12.705 -26.407 29.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.195 4.195 3 C -0.071 4.071 4 N -0.256 5.256 5 C -0.079 4.079 6 C 0.005 3.995 7 N -0.362 5.362 8 C 0.300 3.700 9 O -0.471 6.471 10 C -0.125 4.125 11 H 0.159 0.841 12 C -0.150 4.150 13 C -0.179 4.179 14 C 0.039 3.961 15 H 0.131 0.869 16 F -0.217 7.217 17 C -0.183 4.183 18 C -0.074 4.074 19 C 0.229 3.771 20 O -0.503 6.503 21 N -0.214 5.214 22 C -0.459 4.459 23 H 0.093 0.907 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.814 3.186 27 H -0.201 1.201 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.257 0.743 42 H 0.131 0.869 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.136 0.864 46 H 0.079 0.921 47 H 0.114 0.886 48 H 0.094 0.906 49 H 0.132 0.868 50 H 0.230 0.770 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.651 -10.822 -26.487 28.735 hybrid contribution -0.405 -0.394 1.316 1.432 sum 2.246 -11.216 -25.171 27.648 Atomic orbital electron populations 1.21646 0.94872 1.02276 1.01513 1.22126 0.97396 0.97563 1.02386 1.22194 0.86678 0.96293 1.01902 1.61524 1.08139 1.54904 1.01033 1.22294 1.01689 0.95990 0.87911 1.21051 0.98499 0.95849 0.84083 1.45724 1.57410 1.28128 1.04965 1.21164 0.78789 0.84604 0.85413 1.90714 1.43226 1.26366 1.86768 1.22213 1.03711 0.96091 0.90482 0.84068 1.22580 1.00623 0.94154 0.97617 1.23028 1.05361 0.95215 0.94340 1.22553 0.78353 0.96914 0.98254 0.86900 1.92793 1.39985 1.97220 1.91701 1.22743 1.03605 0.98144 0.93798 1.21774 1.02515 0.94884 0.88179 1.20882 0.82720 0.89190 0.84325 1.90501 1.50294 1.24793 1.84705 1.41922 1.57515 1.16727 1.05230 1.19646 1.41524 0.98192 0.86555 0.90661 1.25968 0.96415 0.98451 1.00394 1.69663 1.43976 1.19587 1.22904 0.84921 0.78292 0.77874 0.77557 1.20092 1.19626 1.19583 0.94094 0.92251 0.91271 0.89763 0.92386 0.93337 0.90786 0.88425 0.91256 0.92801 0.93161 0.74340 0.86944 0.92746 0.90000 0.86432 0.92068 0.88584 0.90610 0.86789 0.77013 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.91 71.98 0.71 -2.55 16 2 C -0.16 -3.71 5.29 30.59 0.16 -3.55 16 3 C 0.06 1.78 4.80 86.30 0.41 2.19 16 4 N -0.53 -16.23 4.31 -900.77 -3.88 -20.12 16 5 C 0.05 0.97 4.81 86.30 0.41 1.39 16 6 C 0.13 2.90 5.60 86.38 0.48 3.38 16 7 N -0.71 -11.03 5.52 -463.06 -2.56 -13.59 16 8 C 0.51 10.22 7.14 87.65 0.63 10.85 16 9 O -0.59 -18.53 15.44 -3.04 -0.05 -18.57 16 10 C -0.10 -1.13 3.25 -10.47 -0.03 -1.16 16 11 H 0.14 0.60 8.14 -2.38 -0.02 0.58 16 12 C -0.11 -0.83 6.31 31.94 0.20 -0.63 16 13 C -0.14 -0.85 6.62 31.72 0.21 -0.64 16 14 C 0.08 0.84 4.68 31.32 0.15 0.98 16 15 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 16 F -0.24 -4.63 17.05 44.97 0.77 -3.86 16 17 C -0.14 -2.07 6.02 31.32 0.19 -1.88 16 18 C 0.06 1.87 5.34 85.56 0.46 2.33 16 19 C 0.44 20.84 7.36 87.66 0.65 21.49 16 20 O -0.62 -34.63 14.70 -3.07 -0.05 -34.68 16 21 N -0.58 -29.30 5.29 -306.98 -1.62 -30.92 16 22 C -0.33 -18.78 9.68 84.04 0.81 -17.96 16 23 H 0.08 4.63 7.16 -2.90 -0.02 4.61 16 24 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 25 N -0.92 -49.32 13.05 21.66 0.28 -49.03 16 26 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 27 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 29 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.59 6.26 -2.39 -0.01 1.57 16 34 H 0.06 1.48 6.29 -2.39 -0.02 1.46 16 35 H 0.05 1.95 6.54 -2.38 -0.02 1.93 16 36 H 0.07 2.23 6.51 -2.39 -0.02 2.21 16 37 H 0.10 1.62 7.86 -2.39 -0.02 1.60 16 38 H 0.07 1.06 5.98 -2.38 -0.01 1.04 16 39 H 0.05 1.39 6.57 -2.39 -0.02 1.37 16 40 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.42 3.09 8.47 -92.71 -0.79 2.30 16 42 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.05 0.67 8.05 -2.39 -0.02 0.65 16 44 H 0.08 0.58 8.11 -2.39 -0.02 0.56 16 45 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.06 1.40 6.75 -2.39 -0.02 1.38 16 47 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.08 2.16 5.97 -2.39 -0.01 2.15 16 49 H 0.11 3.13 7.81 -2.38 -0.02 3.11 16 50 H 0.40 18.95 7.90 -92.71 -0.73 18.22 16 51 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -79.94 406.35 0.27 -79.66 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: -0.56 Total: 31.80 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 5.91 Total: 14.01 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -7.78 Total: -113.66 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -0.09 Total: -53.25 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.77 Total: -3.86 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -79.94 0.27 -79.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267317216.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.907 kcal (2) G-P(sol) polarization free energy of solvation -79.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds