Wall clock time and date at job start Wed Apr 1 2020 02:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47118 * 2 1 4 4 N 1.46505 * 109.47246 * 180.02562 * 3 2 1 5 5 C 1.36945 * 119.99617 * 264.09036 * 4 3 2 6 6 H 1.07995 * 119.99645 * 188.64112 * 5 4 3 7 7 C 1.38807 * 119.99872 * 8.64088 * 5 4 3 8 8 N 1.31621 * 120.00069 * 29.07479 * 7 5 4 9 9 Si 1.86804 * 119.99912 * 209.07577 * 7 5 4 10 10 H 1.48493 * 109.47248 * 94.99118 * 9 7 5 11 11 H 1.48504 * 109.46849 * 214.99402 * 9 7 5 12 12 H 1.48505 * 109.46975 * 334.98836 * 9 7 5 13 13 C 1.46501 * 120.00416 * 84.08963 * 4 3 2 14 14 C 1.53005 * 109.46772 * 270.00154 * 13 4 3 15 15 N 1.46501 * 109.46772 * 179.97438 * 14 13 4 16 16 C 1.34777 * 119.99926 * 180.02562 * 15 14 13 17 17 O 1.21552 * 120.00088 * 359.97438 * 16 15 14 18 18 C 1.47859 * 120.00179 * 179.97438 * 16 15 14 19 19 C 1.39619 * 120.10566 * 0.02562 * 18 16 15 20 20 C 1.37990 * 120.00127 * 179.97438 * 19 18 16 21 21 C 1.38247 * 120.22829 * 359.76564 * 20 19 18 22 22 C 1.38979 * 120.21825 * 0.51512 * 21 20 19 23 23 N 1.39717 * 120.00241 * 179.74183 * 22 21 20 24 24 C 1.48226 * 110.99813 * 241.75170 * 23 22 21 25 25 C 1.51119 * 105.36065 * 215.10120 * 24 23 22 26 26 C 1.30962 * 109.45721 * 16.97633 * 25 24 23 27 27 C 1.48232 * 111.00011 * 128.11538 * 23 22 21 28 28 C 1.38680 * 119.99472 * 359.46248 * 22 21 20 29 29 H 1.08996 * 109.47123 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46824 * 299.99937 * 1 2 3 31 31 H 1.08997 * 109.47083 * 60.00001 * 1 2 3 32 32 H 1.08999 * 109.47004 * 239.99605 * 2 1 3 33 33 H 1.08997 * 109.47083 * 119.99999 * 2 1 3 34 34 H 1.08999 * 109.47506 * 59.99912 * 3 2 1 35 35 H 1.09007 * 109.47159 * 299.99865 * 3 2 1 36 36 H 0.97011 * 119.99365 * 180.02562 * 8 7 5 37 37 H 1.08994 * 109.46993 * 150.00394 * 13 4 3 38 38 H 1.08999 * 109.46938 * 29.99898 * 13 4 3 39 39 H 1.08998 * 109.46704 * 60.00190 * 14 13 4 40 40 H 1.08996 * 109.46851 * 299.99994 * 14 13 4 41 41 H 0.97006 * 119.99976 * 359.97438 * 15 14 13 42 42 H 1.07996 * 120.00236 * 359.97438 * 19 18 16 43 43 H 1.07996 * 119.88232 * 180.02562 * 20 19 18 44 44 H 1.07996 * 119.89091 * 180.27410 * 21 20 19 45 45 H 1.08999 * 110.26555 * 96.12910 * 24 23 22 46 46 H 1.09008 * 110.26456 * 334.07301 * 24 23 22 47 47 H 1.08002 * 125.27215 * 197.23883 * 25 24 23 48 48 H 1.07999 * 125.27241 * 180.02562 * 26 25 24 49 49 H 1.09002 * 110.26431 * 25.92555 * 27 23 22 50 50 H 1.08995 * 110.26436 * 263.87103 * 27 23 22 51 51 H 1.08000 * 120.11475 * 180.30349 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.5644 1.1788 6 1 5.2610 1.7048 1.1692 7 6 3.5084 1.5076 2.3866 8 7 2.3992 0.8057 2.4838 9 14 4.1650 2.4274 3.8740 10 1 3.5029 3.7532 3.9682 11 1 3.8831 1.6447 5.1041 12 1 5.6313 2.6154 3.7321 13 6 4.2371 1.3120 -1.2629 14 6 4.4920 -0.1683 -1.5539 15 7 5.2235 -0.2988 -2.8165 16 6 5.5598 -1.5198 -3.2774 17 8 5.2565 -2.5128 -2.6453 18 6 6.2976 -1.6516 -4.5520 19 6 6.6476 -0.5125 -5.2796 20 6 7.3366 -0.6380 -6.4685 21 6 7.6870 -1.8890 -6.9412 22 6 7.3383 -3.0293 -6.2275 23 7 7.6900 -4.2917 -6.7121 24 6 6.4849 -5.1099 -6.9867 25 6 6.8746 -6.5270 -6.6350 26 6 7.9536 -6.5114 -5.8929 27 6 8.3933 -5.0822 -5.6740 28 6 6.6462 -2.9139 -5.0313 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 1.9226 0.7664 3.3278 37 1 5.1895 1.8365 -1.1864 38 1 3.6477 1.7450 -2.0711 39 1 3.5395 -0.6927 -1.6304 40 1 5.0813 -0.6012 -0.7457 41 1 5.4653 0.4937 -3.3211 42 1 6.3790 0.4668 -4.9119 43 1 7.6067 0.2444 -7.0296 44 1 8.2301 -1.9806 -7.8702 45 1 6.2152 -5.0430 -8.0406 46 1 5.6546 -4.7806 -6.3619 47 1 6.3477 -7.4154 -6.9507 48 1 8.4521 -7.3845 -5.4987 49 1 8.1003 -4.7451 -4.6797 50 1 9.4724 -4.9957 -5.8002 51 1 6.3785 -3.7986 -4.4726 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267318115.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:02 Heat of formation + Delta-G solvation = 59.218180 kcal Electronic energy + Delta-G solvation = -29365.944979 eV Core-core repulsion = 25460.122144 eV Total energy + Delta-G solvation = -3905.822835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.93999 -39.54714 -37.84076 -36.56732 -34.50248 -33.20996 -31.96762 -31.64085 -31.11853 -28.97947 -28.74599 -27.81036 -25.51825 -24.41898 -23.68945 -22.88623 -21.38232 -20.84123 -20.30440 -19.79105 -19.72650 -18.22219 -16.87808 -16.65657 -16.31587 -16.01004 -15.41106 -15.10435 -14.93266 -14.67347 -14.31944 -14.08961 -13.90077 -13.74687 -13.48351 -13.25129 -13.13371 -12.91875 -12.71158 -12.60680 -12.42005 -12.14813 -12.12143 -11.65789 -11.64460 -11.56491 -11.34636 -11.06378 -10.86225 -10.64568 -10.41301 -10.13620 -9.99485 -9.93861 -9.85688 -9.66289 -9.23380 -9.19973 -9.02445 -8.72140 -8.61812 -8.36738 -6.97183 -5.82281 -3.10950 0.68169 0.96160 1.81647 2.84574 3.32859 3.39122 3.47859 3.48060 3.50874 3.69312 4.30500 4.48131 4.48666 4.60667 4.63157 4.82463 4.97457 5.02271 5.13516 5.18006 5.21366 5.27123 5.30871 5.34588 5.50653 5.53981 5.61180 5.80281 5.87040 5.99645 6.02410 6.04547 6.08917 6.10661 6.17112 6.20977 6.27075 6.41714 6.46351 6.51787 6.62989 6.65188 6.66609 6.84834 6.97879 6.98679 7.15110 7.24682 7.64381 7.72614 7.75175 8.10945 8.29170 8.41477 9.18978 9.81176 10.25968 11.21515 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015590 B = 0.002116 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.590598 B =13227.126585 C =13480.702716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.135 4.135 3 C 0.174 3.826 4 N -0.590 5.590 5 C -0.260 4.260 6 H 0.075 0.925 7 C 0.004 3.996 8 N -0.885 5.885 9 Si 0.892 3.108 10 H -0.289 1.289 11 H -0.294 1.294 12 H -0.281 1.281 13 C 0.143 3.857 14 C 0.089 3.911 15 N -0.717 5.717 16 C 0.548 3.452 17 O -0.539 6.539 18 C -0.116 4.116 19 C -0.089 4.089 20 C -0.120 4.120 21 C -0.072 4.072 22 C 0.064 3.936 23 N -0.467 5.467 24 C 0.053 3.947 25 C -0.168 4.168 26 C -0.166 4.166 27 C 0.049 3.951 28 C -0.093 4.093 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.030 0.970 32 H 0.022 0.978 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.006 0.994 36 H 0.253 0.747 37 H 0.050 0.950 38 H 0.043 0.957 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.394 0.606 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.069 0.931 50 H 0.091 0.909 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.724 -6.956 -21.065 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.174 4.174 3 C 0.048 3.952 4 N -0.310 5.310 5 C -0.389 4.389 6 H 0.093 0.907 7 C -0.194 4.194 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.216 1.216 11 H -0.221 1.221 12 H -0.206 1.206 13 C 0.015 3.985 14 C -0.036 4.036 15 N -0.368 5.368 16 C 0.334 3.666 17 O -0.417 6.417 18 C -0.120 4.120 19 C -0.107 4.107 20 C -0.138 4.138 21 C -0.091 4.091 22 C -0.030 4.030 23 N -0.188 5.188 24 C -0.073 4.073 25 C -0.187 4.187 26 C -0.185 4.185 27 C -0.077 4.077 28 C -0.114 4.114 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.024 0.976 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.229 0.771 42 H 0.148 0.852 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.156 0.844 48 H 0.156 0.844 49 H 0.087 0.913 50 H 0.109 0.891 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.712 -7.541 -20.892 23.859 hybrid contribution -0.116 0.449 1.352 1.429 sum 8.596 -7.092 -19.540 22.495 Atomic orbital electron populations 1.21630 0.98578 0.99379 0.99949 1.22276 0.92910 1.00479 1.01778 1.20823 0.81637 0.94527 0.98167 1.44266 1.01818 1.83515 1.01424 1.19248 0.92503 1.43753 0.83367 0.90729 1.24704 0.97895 0.99646 0.97194 1.70186 1.19718 1.37998 1.25016 0.86411 0.78412 0.80325 0.82614 1.21614 1.22064 1.20615 1.20956 0.96422 0.91646 0.89519 1.22789 0.95960 1.01792 0.83090 1.46139 1.57881 1.07355 1.25473 1.18299 0.79564 0.83961 0.84822 1.90782 1.54847 1.37203 1.58872 1.20002 1.01799 0.93983 0.96201 1.21406 0.96844 0.97866 0.94625 1.21069 0.98985 0.97513 0.96245 1.21130 0.97759 0.90716 0.99494 1.18952 0.99008 0.91336 0.93708 1.63342 1.18747 0.99934 1.36777 1.22230 0.92080 0.90350 1.02596 1.23561 0.97900 0.97544 0.99653 1.23566 0.97993 0.97455 0.99455 1.22283 1.00487 0.90593 0.94300 1.21767 0.96173 0.97746 0.95705 0.94746 0.93068 0.95080 0.95950 0.87875 0.89945 0.97628 0.93694 0.93144 0.93867 0.91448 0.91324 0.77132 0.85231 0.84874 0.84899 0.89137 0.91587 0.84384 0.84373 0.91310 0.89094 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.91 37.16 0.37 -2.29 16 2 C -0.14 -3.04 5.63 -26.73 -0.15 -3.19 16 3 C 0.17 4.03 4.92 -4.04 -0.02 4.01 16 4 N -0.59 -13.95 2.54 -173.24 -0.44 -14.39 16 5 C -0.26 -6.82 9.66 -15.06 -0.15 -6.96 16 6 H 0.07 1.94 7.96 -52.49 -0.42 1.52 16 7 C 0.00 0.11 4.77 -17.43 -0.08 0.03 16 8 N -0.88 -24.12 8.80 55.49 0.49 -23.64 16 9 Si 0.89 21.18 29.64 -169.99 -5.04 16.15 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.14 2.73 5.82 -4.04 -0.02 2.70 16 14 C 0.09 1.70 5.88 -4.04 -0.02 1.67 16 15 N -0.72 -10.90 5.51 -61.24 -0.34 -11.24 16 16 C 0.55 9.03 7.77 -12.32 -0.10 8.93 16 17 O -0.54 -11.17 16.34 5.32 0.09 -11.09 16 18 C -0.12 -1.50 5.87 -104.99 -0.62 -2.12 16 19 C -0.09 -0.87 9.54 -39.16 -0.37 -1.24 16 20 C -0.12 -0.99 10.02 -39.67 -0.40 -1.38 16 21 C -0.07 -0.65 9.96 -39.30 -0.39 -1.04 16 22 C 0.06 0.69 4.90 -83.83 -0.41 0.28 16 23 N -0.47 -4.69 5.58 -171.19 -0.96 -5.64 16 24 C 0.05 0.49 6.48 -4.04 -0.03 0.46 16 25 C -0.17 -1.36 10.95 -35.81 -0.39 -1.75 16 26 C -0.17 -1.36 10.95 -35.81 -0.39 -1.75 16 27 C 0.05 0.46 6.43 -4.04 -0.03 0.44 16 28 C -0.09 -1.17 7.26 -38.97 -0.28 -1.45 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.49 5.97 -51.93 -0.31 0.18 16 33 H 0.10 2.71 6.18 -51.93 -0.32 2.39 16 34 H 0.08 2.13 6.02 -51.93 -0.31 1.81 16 35 H 0.01 0.12 7.98 -51.93 -0.41 -0.30 16 36 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 38 H 0.04 0.74 7.95 -51.93 -0.41 0.32 16 39 H 0.07 1.43 5.92 -51.93 -0.31 1.12 16 40 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.39 4.57 6.50 -40.82 -0.27 4.31 16 42 H 0.13 0.99 6.40 -52.49 -0.34 0.65 16 43 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 0.67 6.88 -51.92 -0.36 0.31 16 47 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 48 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 49 H 0.07 0.72 6.17 -51.93 -0.32 0.40 16 50 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.13 1.84 6.61 -52.49 -0.35 1.50 16 LS Contribution 404.41 15.07 6.09 6.09 Total: -1.00 -30.84 404.41 -11.49 -42.32 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -7.90 Total: 6.10 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -3.48 Total: -4.67 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -1.24 Total: -54.91 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.04 Total: 16.15 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.84 -11.49 -42.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267318115.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.539 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds