Wall clock time and date at job start Wed Apr 1 2020 02:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47337 * 2 1 4 4 H 1.08999 * 109.47107 * 54.99801 * 3 2 1 5 5 F 1.39901 * 109.47085 * 295.00336 * 3 2 1 6 6 C 1.50692 * 109.47212 * 174.99845 * 3 2 1 7 7 O 1.21287 * 120.00040 * 43.43958 * 6 3 2 8 8 N 1.34778 * 120.00060 * 223.44275 * 6 3 2 9 9 C 1.46928 * 120.62778 * 184.51642 * 8 6 3 10 10 C 1.53628 * 108.54143 * 126.36671 * 9 8 6 11 11 C 1.53042 * 109.24281 * 54.85620 * 10 9 8 12 12 C 1.52998 * 109.44962 * 178.49597 * 11 10 9 13 13 N 1.46900 * 109.46959 * 182.66527 * 12 11 10 14 14 C 1.46896 * 111.00294 * 67.86877 * 13 12 11 15 15 C 1.46900 * 110.99692 * 191.82469 * 13 12 11 16 16 C 1.50705 * 109.47192 * 169.99972 * 15 13 12 17 17 O 1.21293 * 119.99528 * 359.97438 * 16 15 13 18 18 N 1.34774 * 120.00018 * 179.97438 * 16 15 13 19 19 C 1.37103 * 119.99673 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99971 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99747 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00166 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99782 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47256 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47406 * 119.99849 * 23 21 19 26 26 H 1.48503 * 109.46928 * 239.99383 * 23 21 19 27 27 C 1.53037 * 109.53772 * 298.50975 * 11 10 9 28 28 C 1.46918 * 120.63168 * 4.79319 * 8 6 3 29 29 H 1.09000 * 109.46925 * 300.00075 * 1 2 3 30 30 H 1.09000 * 109.47312 * 59.99689 * 1 2 3 31 31 H 1.08996 * 109.47546 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46624 * 120.00016 * 2 1 3 33 33 H 1.09000 * 109.46925 * 239.99925 * 2 1 3 34 34 H 1.08997 * 109.58535 * 246.20006 * 9 8 6 35 35 H 1.09002 * 109.58958 * 6.62905 * 9 8 6 36 36 H 1.08997 * 109.63710 * 294.86216 * 10 9 8 37 37 H 1.08998 * 109.43109 * 174.72252 * 10 9 8 38 38 H 1.08997 * 109.46003 * 58.52728 * 11 10 9 39 39 H 1.08994 * 109.46912 * 302.66106 * 12 11 10 40 40 H 1.09000 * 109.47072 * 62.66472 * 12 11 10 41 41 H 1.09000 * 109.47257 * 64.60013 * 14 13 12 42 42 H 1.08997 * 109.47350 * 184.60603 * 14 13 12 43 43 H 1.09000 * 109.47062 * 304.60258 * 14 13 12 44 44 H 1.08995 * 109.47117 * 289.99631 * 15 13 12 45 45 H 1.09001 * 109.47088 * 49.99946 * 15 13 12 46 46 H 0.96995 * 120.00339 * 359.97438 * 18 16 15 47 47 H 0.96996 * 119.99737 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.50153 * 301.41604 * 27 11 10 49 49 H 1.08996 * 109.50073 * 181.31418 * 27 11 10 50 50 H 1.09000 * 109.58625 * 353.37389 * 28 8 6 51 51 H 1.09001 * 109.59144 * 113.65803 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 9 1.6699 2.0680 -1.1954 6 6 3.5419 1.4442 0.1239 7 8 4.2047 0.6616 -0.5236 8 7 4.1486 2.3155 0.9542 9 6 5.6144 2.3970 1.0126 10 6 6.0320 3.8578 0.7851 11 6 5.3122 4.7517 1.7976 12 6 5.7532 6.2033 1.5996 13 7 5.1116 7.0524 2.6122 14 6 5.6258 6.7508 3.9547 15 6 5.2821 8.4755 2.2905 16 6 4.4134 9.3041 3.2016 17 8 3.7202 8.7622 4.0364 18 7 4.4070 10.6471 3.0887 19 6 3.6163 11.4008 3.9173 20 1 2.9984 10.9183 4.6600 21 6 3.6092 12.7854 3.8006 22 7 4.3607 13.3724 2.8964 23 14 2.5325 13.8123 4.9299 24 1 1.7890 12.9179 5.8533 25 1 3.3840 14.7398 5.7172 26 1 1.5680 14.5958 4.1167 27 6 3.7997 4.6454 1.5898 28 6 3.3568 3.1974 1.8224 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 5.9602 2.0634 1.9910 35 1 6.0468 1.7667 0.2355 36 1 5.7619 4.1627 -0.2259 37 1 7.1097 3.9519 0.9183 38 1 5.5633 4.4305 2.8085 39 1 6.8362 6.2711 1.7020 40 1 5.4605 6.5395 0.6050 41 1 6.6845 7.0055 4.0040 42 1 5.0768 7.3345 4.6937 43 1 5.4976 5.6886 4.1628 44 1 6.3260 8.7568 2.4290 45 1 4.9929 8.6510 1.2542 46 1 4.9617 11.0804 2.4213 47 1 4.3560 14.3390 2.8152 48 1 3.5506 4.9429 0.5712 49 1 3.2887 5.3000 2.2957 50 1 2.2991 3.0954 1.5797 51 1 3.5202 2.9262 2.8654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267740169.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:19 Heat of formation + Delta-G solvation = -119.626357 kcal Electronic energy + Delta-G solvation = -30639.640872 eV Core-core repulsion = 26295.293531 eV Total energy + Delta-G solvation = -4344.347341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -48.18484 -40.50072 -38.85478 -37.93915 -36.21967 -34.45165 -33.95333 -33.18541 -31.44946 -31.24155 -28.73132 -27.92255 -27.24279 -25.15531 -24.04376 -23.65710 -22.55525 -21.51553 -20.34371 -19.43584 -19.12987 -18.18595 -17.83987 -17.00184 -16.40048 -16.15006 -15.82073 -15.34307 -15.13412 -14.91296 -14.83071 -14.69976 -14.39798 -14.17378 -14.02439 -13.74647 -13.65846 -13.33034 -13.30970 -13.06710 -12.94826 -12.57559 -12.50060 -12.25520 -12.08813 -11.81496 -11.56510 -11.55084 -11.50369 -11.36662 -11.26567 -11.20573 -10.96037 -10.85044 -10.61257 -10.51627 -10.35506 -10.23476 -9.93309 -9.49796 -9.01339 -8.45771 -7.98707 -7.84497 -6.42806 -3.83571 2.05895 2.48980 3.15126 3.25801 3.32605 3.82098 3.89598 3.95023 4.06240 4.09743 4.22663 4.45648 4.54485 4.59538 4.73404 4.82851 4.93075 4.99652 5.03086 5.07347 5.13049 5.21227 5.24037 5.25306 5.36391 5.46611 5.48436 5.49912 5.62118 5.65995 5.68131 5.72812 5.77763 5.79434 5.80712 5.84692 5.93547 6.00591 6.06374 6.23569 6.28468 6.35187 6.55871 6.93711 7.26381 7.39012 7.54317 7.66112 8.05755 8.60892 9.17308 9.53877 10.05515 10.75029 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.016846 B = 0.002002 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.676958 B =13982.150710 C =14961.749483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.075 3.925 4 H 0.107 0.893 5 F -0.188 7.188 6 C 0.495 3.505 7 O -0.527 6.527 8 N -0.602 5.602 9 C 0.112 3.888 10 C -0.130 4.130 11 C -0.082 4.082 12 C 0.058 3.942 13 N -0.516 5.516 14 C 0.021 3.979 15 C 0.046 3.954 16 C 0.445 3.555 17 O -0.578 6.578 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.123 4.123 28 C 0.097 3.903 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.013 0.987 42 H 0.095 0.905 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.065 0.935 49 H 0.100 0.900 50 H 0.086 0.914 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.398 -22.987 -4.791 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.178 4.178 3 C 0.036 3.964 4 H 0.124 0.876 5 F -0.169 7.169 6 C 0.280 3.720 7 O -0.403 6.403 8 N -0.336 5.336 9 C -0.010 4.010 10 C -0.168 4.168 11 C -0.100 4.100 12 C -0.070 4.070 13 N -0.239 5.239 14 C -0.127 4.127 15 C -0.086 4.086 16 C 0.230 3.770 17 O -0.462 6.462 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.161 4.161 28 C -0.025 4.025 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.031 0.969 42 H 0.114 0.886 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.119 0.881 50 H 0.104 0.896 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.204 -23.642 -4.642 24.094 hybrid contribution 0.802 1.310 0.013 1.536 sum 0.598 -22.331 -4.628 22.814 Atomic orbital electron populations 1.21784 0.94005 1.02680 1.02701 1.21989 0.97389 0.93522 1.04912 1.21820 0.92179 0.96408 0.86022 0.87563 1.92893 1.91972 1.83892 1.48125 1.20962 0.90450 0.80777 0.79790 1.90709 1.66217 1.38609 1.44799 1.48250 1.07606 1.37466 1.40230 1.21735 0.79005 0.97441 1.02778 1.22039 1.00525 0.94007 1.00253 1.21136 0.95394 0.94269 0.99244 1.22173 0.95987 0.92670 0.96189 1.61558 1.57227 1.02997 1.02155 1.22575 0.96955 1.01542 0.91651 1.21873 0.98254 0.88319 1.00128 1.19738 0.86895 0.82852 0.87470 1.90471 1.45528 1.71369 1.38859 1.41885 1.40280 1.04439 1.33602 1.19736 1.20715 0.88155 1.14087 0.87868 1.25267 0.97955 0.97117 0.97711 1.69619 1.39708 1.10873 1.34135 0.85807 0.79421 0.79469 0.79683 1.19229 1.20812 1.20756 1.21894 0.96077 0.94494 1.03649 1.22094 0.95447 0.90720 0.94278 0.92196 0.91822 0.91679 0.89886 0.89528 0.91163 0.89010 0.91258 0.90589 0.90692 0.95071 0.90952 0.96888 0.88611 0.92219 0.93604 0.89519 0.77526 0.91942 0.91579 0.88149 0.89611 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.83 37.16 0.37 -0.56 16 2 C -0.14 -1.05 5.39 -26.73 -0.14 -1.20 16 3 C 0.07 0.66 3.39 -27.89 -0.09 0.57 16 4 H 0.11 0.69 5.36 -51.93 -0.28 0.41 16 5 F -0.19 -2.13 16.75 2.25 0.04 -2.09 16 6 C 0.49 5.45 7.05 -10.99 -0.08 5.37 16 7 O -0.53 -7.50 16.00 5.55 0.09 -7.41 16 8 N -0.60 -5.67 2.97 -172.50 -0.51 -6.18 16 9 C 0.11 0.99 6.45 -3.48 -0.02 0.96 16 10 C -0.13 -1.09 5.38 -26.38 -0.14 -1.24 16 11 C -0.08 -0.78 2.08 -90.58 -0.19 -0.97 16 12 C 0.06 0.67 4.37 -3.82 -0.02 0.66 16 13 N -0.52 -7.84 3.81 -244.38 -0.93 -8.77 16 14 C 0.02 0.31 9.03 60.06 0.54 0.85 16 15 C 0.05 0.78 5.45 -4.97 -0.03 0.76 16 16 C 0.45 10.16 7.51 -10.98 -0.08 10.08 16 17 O -0.58 -14.93 13.88 5.55 0.08 -14.85 16 18 N -0.57 -14.06 5.29 -10.96 -0.06 -14.11 16 19 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 22 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 23 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 27 C -0.12 -1.22 5.24 -26.61 -0.14 -1.36 16 28 C 0.10 0.77 6.32 -3.71 -0.02 0.75 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.43 7.94 -51.93 -0.41 0.01 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.76 8.04 -51.93 -0.42 0.35 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.91 7.03 -51.93 -0.37 0.54 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.72 6.41 -51.93 -0.33 0.39 16 39 H 0.03 0.35 8.10 -51.93 -0.42 -0.08 16 40 H 0.07 0.83 7.89 -51.93 -0.41 0.42 16 41 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.10 1.79 5.89 -51.93 -0.31 1.48 16 43 H 0.06 0.75 6.30 -51.93 -0.33 0.42 16 44 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 45 H 0.09 1.36 7.91 -51.93 -0.41 0.95 16 46 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 47 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.10 1.20 7.64 -51.93 -0.40 0.81 16 50 H 0.09 0.57 5.15 -51.93 -0.27 0.30 16 51 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 403.71 15.07 6.08 6.08 Total: -1.00 -32.31 403.71 -8.21 -40.52 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -8.40 Total: 7.81 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -0.29 Total: 6.83 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.78 Total: -52.68 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: 0.17 Total: -22.26 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.31 -8.21 -40.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267740169.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.104 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds