Wall clock time and date at job start Wed Apr 1 2020 02:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47139 * 2 1 4 4 H 1.08996 * 109.46982 * 54.99974 * 3 2 1 5 5 F 1.39903 * 109.46783 * 294.99752 * 3 2 1 6 6 C 1.50702 * 109.46858 * 175.00142 * 3 2 1 7 7 O 1.21281 * 119.99963 * 43.90365 * 6 3 2 8 8 N 1.34778 * 119.99671 * 223.90383 * 6 3 2 9 9 C 1.46920 * 120.62627 * 174.47810 * 8 6 3 10 10 C 1.53194 * 108.77569 * 126.41465 * 9 8 6 11 11 C 1.53047 * 109.30890 * 54.63112 * 10 9 8 12 12 C 1.53034 * 109.53827 * 298.63623 * 11 10 9 13 13 H 1.09004 * 109.49832 * 301.38140 * 12 11 10 14 14 C 1.52999 * 109.49622 * 181.32175 * 12 11 10 15 15 C 1.52999 * 109.47322 * 175.00038 * 14 12 11 16 16 N 1.46898 * 109.47213 * 179.97438 * 15 14 12 17 17 C 1.46900 * 111.00086 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47480 * 179.97438 * 17 16 15 19 19 O 1.21298 * 119.99574 * 0.02562 * 18 17 16 20 20 N 1.34772 * 120.00196 * 179.97438 * 18 17 16 21 21 C 1.37109 * 119.99837 * 180.02562 * 20 18 17 22 22 H 1.07994 * 119.99868 * 0.02562 * 21 20 18 23 23 C 1.38945 * 119.99758 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00009 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 120.00226 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47077 * 269.99693 * 25 23 21 27 27 H 1.48498 * 109.47144 * 29.99319 * 25 23 21 28 28 H 1.48493 * 109.47270 * 149.99505 * 25 23 21 29 29 C 1.46924 * 120.62875 * 354.50328 * 8 6 3 30 30 H 1.09001 * 109.47221 * 59.99729 * 1 2 3 31 31 H 1.09000 * 109.47337 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47134 * 299.99799 * 1 2 3 33 33 H 1.08996 * 109.46705 * 239.99817 * 2 1 3 34 34 H 1.08999 * 109.46811 * 119.99954 * 2 1 3 35 35 H 1.08997 * 109.58949 * 6.62722 * 9 8 6 36 36 H 1.09000 * 109.70569 * 246.26762 * 9 8 6 37 37 H 1.09003 * 109.49763 * 294.68154 * 10 9 8 38 38 H 1.09001 * 109.52444 * 174.59771 * 10 9 8 39 39 H 1.09000 * 109.45239 * 178.61531 * 11 10 9 40 40 H 1.09002 * 109.44848 * 58.65312 * 11 10 9 41 41 H 1.08997 * 109.47818 * 54.99377 * 14 12 11 42 42 H 1.09006 * 109.47195 * 294.99881 * 14 12 11 43 43 H 1.09001 * 109.47175 * 59.99912 * 15 14 12 44 44 H 1.08990 * 109.47173 * 299.99759 * 15 14 12 45 45 H 1.00910 * 111.00299 * 303.95118 * 16 15 14 46 46 H 1.09007 * 109.47297 * 59.99965 * 17 16 15 47 47 H 1.09000 * 109.47136 * 300.00102 * 17 16 15 48 48 H 0.97000 * 120.00071 * 0.02562 * 20 18 17 49 49 H 0.96997 * 120.00321 * 180.02562 * 24 23 21 50 50 H 1.09003 * 109.58850 * 113.80075 * 29 8 6 51 51 H 1.08993 * 109.59002 * 353.36966 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 9 1.6699 2.0679 -1.1955 6 6 3.5419 1.4442 0.1238 7 8 4.2052 0.6673 -0.5300 8 7 4.1480 2.3092 0.9611 9 6 5.5987 2.2432 1.1839 10 6 6.2021 3.6256 0.9160 11 6 5.4810 4.6675 1.7744 12 6 3.9988 4.7056 1.3954 13 1 3.9000 4.9472 0.3370 14 6 3.2853 5.7705 2.2308 15 6 1.8331 5.8953 1.7657 16 7 1.1480 6.9172 2.5682 17 6 -0.2522 7.0644 2.1491 18 6 -0.9213 8.1184 2.9933 19 8 -0.2932 8.6910 3.8587 20 7 -2.2171 8.4255 2.7860 21 6 -2.8255 9.3848 3.5537 22 1 -2.2663 9.8946 4.3242 23 6 -4.1613 9.7017 3.3397 24 7 -4.7444 10.6215 4.0751 25 14 -5.1284 8.8203 2.0064 26 1 -5.0040 9.5672 0.7289 27 1 -4.5913 7.4470 1.8311 28 1 -6.5585 8.7462 2.3992 29 6 3.3705 3.3355 1.6687 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 6.0400 1.5141 0.5045 36 1 5.7994 1.9505 2.2145 37 1 6.0826 3.8767 -0.1379 38 1 7.2621 3.6158 1.1698 39 1 5.9248 5.6483 1.6040 40 1 5.5800 4.4020 2.8269 41 1 3.7903 6.7284 2.1067 42 1 3.3066 5.4822 3.2819 43 1 1.3282 4.9374 1.8900 44 1 1.8118 6.1836 0.7148 45 1 1.2099 6.7054 3.5529 46 1 -0.7713 6.1143 2.2760 47 1 -0.2884 7.3610 1.1008 48 1 -2.7192 7.9678 2.0937 49 1 -5.6770 10.8425 3.9260 50 1 3.3871 3.1330 2.7396 51 1 2.3416 3.3271 1.3091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267891925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:24 Heat of formation + Delta-G solvation = -156.271902 kcal Electronic energy + Delta-G solvation = -30414.488884 eV Core-core repulsion = 26068.552473 eV Total energy + Delta-G solvation = -4345.936411 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -48.99864 -41.35248 -40.28146 -39.08118 -37.06517 -35.93240 -35.09427 -34.51629 -33.73571 -33.32280 -30.09228 -28.90966 -27.67918 -26.34633 -25.61676 -24.14868 -23.00978 -21.97750 -21.54943 -21.20248 -20.26608 -20.20228 -18.96793 -17.89969 -17.74714 -17.18977 -17.09153 -16.69012 -16.53068 -15.94337 -15.88173 -15.66577 -15.56699 -15.41066 -15.06109 -14.88530 -14.69434 -14.51853 -14.30558 -14.08659 -14.00383 -13.87321 -13.82319 -13.37569 -13.22686 -13.15271 -12.94803 -12.84486 -12.50605 -12.39543 -12.24672 -12.05631 -11.99487 -11.96624 -11.81510 -11.63567 -11.55505 -11.49800 -11.38355 -10.77653 -10.40928 -10.23430 -9.79545 -9.25146 -8.40041 -6.00965 1.19447 1.31434 1.37333 1.45899 1.71305 1.97653 2.24355 2.75531 3.05228 3.16549 3.40911 3.44088 3.49065 3.68189 3.82455 3.85197 3.93675 4.02923 4.15719 4.23733 4.29357 4.35810 4.38183 4.42817 4.48142 4.50271 4.56178 4.60439 4.67570 4.70366 4.80309 4.82493 4.89289 4.91524 4.99994 5.03388 5.10865 5.18413 5.27168 5.31777 5.33835 5.42671 5.49845 5.54555 5.93197 6.10461 6.12451 6.47357 6.61475 6.82636 6.89697 7.41629 7.98315 8.77604 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.012045 B = 0.002269 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.057603 B =12336.497210 C =14294.112801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.138 4.138 3 C 0.074 3.926 4 H 0.134 0.866 5 F -0.202 7.202 6 C 0.489 3.511 7 O -0.567 6.567 8 N -0.598 5.598 9 C 0.104 3.896 10 C -0.129 4.129 11 C -0.113 4.113 12 C -0.092 4.092 13 H 0.068 0.932 14 C -0.102 4.102 15 C 0.057 3.943 16 N -0.690 5.690 17 C 0.062 3.938 18 C 0.448 3.552 19 O -0.615 6.615 20 N -0.592 5.592 21 C -0.328 4.328 22 H 0.055 0.945 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.259 1.259 27 H -0.229 1.229 28 H -0.276 1.276 29 C 0.098 3.902 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.072 0.928 45 H 0.346 0.654 46 H 0.079 0.921 47 H 0.110 0.890 48 H 0.390 0.610 49 H 0.279 0.721 50 H 0.098 0.902 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.881 -24.332 -9.034 30.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.176 4.176 3 C 0.035 3.965 4 H 0.151 0.849 5 F -0.183 7.183 6 C 0.276 3.724 7 O -0.445 6.445 8 N -0.330 5.330 9 C -0.017 4.017 10 C -0.167 4.167 11 C -0.150 4.150 12 C -0.111 4.111 13 H 0.086 0.914 14 C -0.140 4.140 15 C -0.072 4.072 16 N -0.323 5.323 17 C -0.071 4.071 18 C 0.236 3.764 19 O -0.499 6.499 20 N -0.234 5.234 21 C -0.458 4.458 22 H 0.073 0.927 23 C -0.214 4.214 24 N -0.576 5.576 25 Si 0.785 3.215 26 H -0.183 1.183 27 H -0.152 1.152 28 H -0.201 1.201 29 C -0.024 4.024 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.165 0.835 46 H 0.097 0.903 47 H 0.128 0.872 48 H 0.225 0.775 49 H 0.088 0.912 50 H 0.116 0.884 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.704 -23.699 -9.153 30.965 hybrid contribution -1.168 -0.412 -0.229 1.260 sum 16.536 -24.111 -9.382 30.705 Atomic orbital electron populations 1.21783 0.92789 1.03461 1.02923 1.21987 0.98342 0.92708 1.04595 1.22017 0.90834 0.97483 0.86139 0.84903 1.92869 1.92041 1.84174 1.49244 1.21379 0.91216 0.80548 0.79278 1.90695 1.67124 1.41549 1.45170 1.48296 1.09363 1.31743 1.43602 1.21782 0.78751 0.98600 1.02601 1.21875 1.00875 0.93795 1.00137 1.21575 0.93602 0.99439 1.00434 1.21398 0.95830 0.93497 1.00421 0.91368 1.21470 0.93837 0.98733 0.99987 1.22153 0.94453 0.92577 0.97981 1.60034 1.12647 1.50353 1.09245 1.21631 0.89578 0.96381 0.99485 1.21060 0.81818 0.86904 0.86652 1.90544 1.64785 1.56717 1.37897 1.42051 1.10688 1.36513 1.34108 1.19007 0.95255 1.15756 1.15740 0.92685 1.26124 0.97192 0.97428 1.00703 1.69803 1.13556 1.32685 1.41532 0.85367 0.78088 0.80138 0.77946 1.18345 1.15189 1.20096 1.22293 0.95515 0.86235 0.98325 0.92674 0.90768 0.90872 0.91361 0.88744 0.90717 0.89159 0.92936 0.88869 0.91045 0.90289 0.91411 0.90663 0.93320 0.90947 0.83542 0.90284 0.87202 0.77453 0.91172 0.88429 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.83 71.98 0.71 -0.84 16 2 C -0.14 -1.80 5.40 30.60 0.17 -1.63 16 3 C 0.07 1.08 3.19 29.85 0.10 1.17 16 4 H 0.13 1.10 5.71 -2.39 -0.01 1.09 16 5 F -0.20 -4.02 16.75 44.97 0.75 -3.26 16 6 C 0.49 9.22 7.04 87.66 0.62 9.83 16 7 O -0.57 -15.14 16.00 -3.03 -0.05 -15.19 16 8 N -0.60 -8.28 2.97 -818.93 -2.43 -10.71 16 9 C 0.10 1.29 6.44 86.36 0.56 1.84 16 10 C -0.13 -1.33 6.08 30.67 0.19 -1.14 16 11 C -0.11 -1.07 5.17 30.62 0.16 -0.91 16 12 C -0.09 -0.99 2.34 -10.72 -0.03 -1.02 16 13 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 14 C -0.10 -1.36 4.94 30.59 0.15 -1.21 16 15 C 0.06 0.93 5.45 86.30 0.47 1.40 16 16 N -0.69 -18.06 6.13 -517.94 -3.17 -21.24 16 17 C 0.06 1.74 6.17 85.56 0.53 2.27 16 18 C 0.45 19.60 7.82 87.66 0.69 20.29 16 19 O -0.61 -33.41 15.78 -3.08 -0.05 -33.46 16 20 N -0.59 -27.31 5.09 -306.98 -1.56 -28.88 16 21 C -0.33 -19.04 10.16 84.04 0.85 -18.18 16 22 H 0.06 3.81 7.39 -2.91 -0.02 3.79 16 23 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 24 N -0.94 -56.05 13.96 21.66 0.30 -55.75 16 25 Si 0.96 38.16 27.74 68.60 1.90 40.06 16 26 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 27 H -0.23 -7.47 6.52 99.48 0.65 -6.83 16 28 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 29 C 0.10 0.92 5.08 86.36 0.44 1.35 16 30 H 0.05 0.67 7.94 -2.39 -0.02 0.65 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.07 1.15 8.04 -2.39 -0.02 1.13 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 1.22 7.00 -2.39 -0.02 1.21 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 38 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 0.90 8.14 -2.38 -0.02 0.89 16 43 H 0.05 0.59 6.70 -2.39 -0.02 0.57 16 44 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.35 9.53 8.43 -89.69 -0.76 8.78 16 46 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 47 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 48 H 0.39 14.76 5.76 -92.71 -0.53 14.23 16 49 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 50 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.10 0.75 4.16 -2.39 -0.01 0.74 16 Total: -1.00 -81.73 407.30 1.34 -80.39 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: -0.41 Total: 35.21 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 6.06 Total: 12.82 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -6.87 Total: -116.57 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -0.10 Total: -48.65 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.75 Total: -3.26 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 1.90 Total: 40.06 kcal Total: -81.73 1.34 -80.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267891925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.878 kcal (2) G-P(sol) polarization free energy of solvation -81.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds