Wall clock time and date at job start Wed Apr 1 2020 02:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47051 * 2 1 4 4 H 1.09000 * 109.46999 * 55.00254 * 3 2 1 5 5 F 1.39895 * 109.47746 * 295.00259 * 3 2 1 6 6 C 1.50704 * 109.47261 * 175.00002 * 3 2 1 7 7 O 1.21286 * 119.99816 * 43.46497 * 6 3 2 8 8 N 1.34772 * 120.00340 * 223.47437 * 6 3 2 9 9 C 1.46928 * 120.62951 * 4.09875 * 8 6 3 10 10 C 1.52762 * 109.00536 * 233.58682 * 9 8 6 11 11 C 1.53041 * 109.38565 * 305.58829 * 10 9 8 12 12 C 1.53001 * 109.44866 * 181.25303 * 11 10 9 13 13 C 1.53006 * 109.47229 * 64.93995 * 12 11 10 14 14 N 1.46892 * 109.47240 * 179.97438 * 13 12 11 15 15 C 1.46897 * 110.99731 * 179.97438 * 14 13 12 16 16 C 1.50707 * 109.46882 * 180.02562 * 15 14 13 17 17 O 1.21286 * 120.00081 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99581 * 180.02562 * 16 15 14 19 19 C 1.37098 * 119.99801 * 179.97438 * 18 16 15 20 20 H 1.08005 * 119.99957 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00339 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00241 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99828 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47136 * 90.00087 * 23 21 19 25 25 H 1.48496 * 109.47076 * 210.00078 * 23 21 19 26 26 H 1.48496 * 109.46761 * 329.99744 * 23 21 19 27 27 C 1.53036 * 109.53580 * 61.24076 * 11 10 9 28 28 C 1.46929 * 120.63061 * 184.38659 * 8 6 3 29 29 H 1.08996 * 109.47475 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47445 * 299.99666 * 1 2 3 31 31 H 1.08999 * 109.47200 * 59.99547 * 1 2 3 32 32 H 1.08999 * 109.47200 * 120.00453 * 2 1 3 33 33 H 1.08998 * 109.46892 * 240.00203 * 2 1 3 34 34 H 1.08995 * 109.58366 * 353.41946 * 9 8 6 35 35 H 1.08994 * 109.58704 * 113.84966 * 9 8 6 36 36 H 1.08998 * 109.56309 * 185.54931 * 10 9 8 37 37 H 1.09005 * 109.35915 * 65.49976 * 10 9 8 38 38 H 1.08992 * 109.45889 * 301.22346 * 11 10 9 39 39 H 1.09000 * 109.46685 * 184.93805 * 12 11 10 40 40 H 1.08994 * 109.47110 * 304.94105 * 12 11 10 41 41 H 1.09000 * 109.46627 * 300.00339 * 13 12 11 42 42 H 1.09003 * 109.46882 * 59.99429 * 13 12 11 43 43 H 1.00909 * 110.99600 * 56.05160 * 14 13 12 44 44 H 1.08996 * 109.47721 * 300.00146 * 15 14 13 45 45 H 1.09001 * 109.47177 * 60.00828 * 15 14 13 46 46 H 0.96994 * 120.00868 * 359.97438 * 18 16 15 47 47 H 0.97002 * 120.00241 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.49828 * 178.68071 * 27 11 10 49 49 H 1.08999 * 109.52714 * 58.60563 * 27 11 10 50 50 H 1.09002 * 109.58237 * 246.15347 * 28 8 6 51 51 H 1.09003 * 109.58535 * 6.42933 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 9 1.6699 2.0680 -1.1953 6 6 3.5419 1.4443 0.1238 7 8 4.2047 0.6620 -0.5240 8 7 4.1485 2.3151 0.9546 9 6 3.3565 3.2072 1.8123 10 6 3.8066 4.6485 1.5809 11 6 5.3186 4.7492 1.7950 12 6 5.7661 6.1984 1.5942 13 6 5.1426 7.0797 2.6785 14 7 5.5728 8.4710 2.4861 15 6 4.9917 9.3482 3.5111 16 6 5.4540 10.7641 3.2813 17 8 6.1942 11.0175 2.3546 18 7 5.0448 11.7487 4.1057 19 6 5.4657 13.0366 3.8970 20 1 6.1255 13.2622 3.0722 21 6 5.0435 14.0519 4.7465 22 7 5.4465 15.2865 4.5462 23 14 3.9028 13.6617 6.1735 24 1 4.7092 13.3300 7.3755 25 1 3.0481 14.8415 6.4609 26 1 3.0442 12.5033 5.8183 27 6 6.0390 3.8490 0.7887 28 6 5.6144 2.3947 1.0151 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.3000 3.1111 1.5624 35 1 3.5125 2.9420 2.8579 36 1 3.2951 5.3076 2.2823 37 1 3.5632 4.9436 0.5602 38 1 5.5638 4.4304 2.8080 39 1 6.8527 6.2555 1.6599 40 1 5.4427 6.5460 0.6131 41 1 4.0561 7.0225 2.6128 42 1 5.4661 6.7321 3.6597 43 1 5.3417 8.7960 1.5591 44 1 3.9042 9.3071 3.4506 45 1 5.3135 9.0163 4.4982 46 1 4.4525 11.5462 4.8466 47 1 5.1520 15.9952 5.1394 48 1 7.1165 3.9391 0.9263 49 1 5.7752 4.1514 -0.2247 50 1 5.9582 2.0619 1.9945 51 1 6.0471 1.7607 0.2411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269894725.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:47 Heat of formation + Delta-G solvation = -129.232982 kcal Electronic energy + Delta-G solvation = -29627.228870 eV Core-core repulsion = 25282.464954 eV Total energy + Delta-G solvation = -4344.763916 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.36413 -40.70184 -38.67048 -38.28120 -36.09743 -34.62337 -34.20149 -33.71348 -31.84117 -31.66859 -30.03925 -28.32028 -26.77111 -24.86366 -23.98088 -23.45704 -22.65153 -21.59192 -20.76864 -19.64441 -19.37268 -18.42617 -18.29357 -17.20731 -16.56192 -16.25055 -15.96824 -15.77494 -15.29719 -15.10153 -15.00237 -14.78572 -14.58872 -14.35811 -14.33489 -13.89046 -13.86270 -13.49054 -13.33785 -13.14675 -12.96561 -12.93778 -12.70275 -12.46112 -12.39875 -12.18369 -11.93530 -11.77056 -11.67483 -11.64608 -11.38820 -11.31837 -11.16509 -11.10190 -10.74352 -10.64808 -10.60907 -10.11555 -9.98708 -9.58620 -9.21629 -8.59868 -8.20452 -8.13846 -6.32143 -3.83689 1.88603 2.29230 3.00583 3.05367 3.13511 3.61721 3.72874 3.85783 3.91028 3.99950 4.09024 4.25994 4.32596 4.38057 4.45600 4.59362 4.73803 4.76913 4.82069 4.86444 4.94200 4.97046 5.08710 5.09723 5.18390 5.21515 5.24446 5.35138 5.36101 5.41512 5.45556 5.53397 5.56561 5.59682 5.62905 5.65932 5.70806 5.79934 5.82865 5.91212 5.95075 6.11203 6.14000 6.73568 7.09881 7.48587 7.56197 7.57880 8.13520 8.58764 8.93952 9.41309 9.81724 10.80990 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.020297 B = 0.001604 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.212768 B =17446.995398 C =18209.096114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.075 3.925 4 H 0.105 0.895 5 F -0.188 7.188 6 C 0.494 3.506 7 O -0.522 6.522 8 N -0.603 5.603 9 C 0.098 3.902 10 C -0.136 4.136 11 C -0.085 4.085 12 C -0.112 4.112 13 C 0.059 3.941 14 N -0.671 5.671 15 C 0.049 3.951 16 C 0.449 3.551 17 O -0.564 6.564 18 N -0.591 5.591 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.130 4.130 28 C 0.110 3.890 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.027 0.973 42 H 0.069 0.931 43 H 0.350 0.650 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.071 0.929 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.997 -32.021 -2.566 33.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.179 4.179 3 C 0.036 3.964 4 H 0.123 0.877 5 F -0.169 7.169 6 C 0.280 3.720 7 O -0.398 6.398 8 N -0.337 5.337 9 C -0.024 4.024 10 C -0.174 4.174 11 C -0.104 4.104 12 C -0.150 4.150 13 C -0.071 4.071 14 N -0.303 5.303 15 C -0.084 4.084 16 C 0.235 3.765 17 O -0.446 6.446 18 N -0.230 5.230 19 C -0.435 4.435 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.168 4.168 28 C -0.012 4.012 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.170 0.830 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.099 0.901 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.543 -32.094 -3.175 33.363 hybrid contribution -1.889 0.185 0.979 2.136 sum -10.432 -31.909 -2.196 33.643 Atomic orbital electron populations 1.21782 0.93963 1.02791 1.02620 1.21995 0.97416 0.93431 1.05039 1.21814 0.92116 0.96504 0.85920 0.87723 1.92897 1.91963 1.83860 1.48135 1.20975 0.90457 0.80857 0.79738 1.90728 1.66165 1.38471 1.44412 1.48208 1.07651 1.37179 1.40634 1.21915 0.95529 0.90179 0.94762 1.22015 0.96749 0.95270 1.03331 1.21120 0.94250 0.95426 0.99598 1.21584 1.01868 0.92687 0.98882 1.22031 0.96761 0.88918 0.99361 1.60060 1.62765 1.00579 1.06901 1.21697 0.96784 0.92941 0.97007 1.19733 0.85616 0.85785 0.85372 1.90565 1.38590 1.83135 1.32331 1.42207 1.44845 1.08293 1.27697 1.19441 1.28188 0.80934 1.14889 0.86287 1.25041 0.97965 0.95043 0.98110 1.69623 1.44375 0.99787 1.38333 0.86663 0.81081 0.78526 0.83047 1.19595 1.20188 1.19564 1.21978 1.00945 0.93676 1.00178 1.21700 0.78737 0.97762 1.02998 0.91584 0.92274 0.91814 0.89832 0.89420 0.89570 0.90459 0.89827 0.91090 0.90634 0.90560 0.91852 0.95500 0.91252 0.83049 0.93889 0.89554 0.79708 0.91611 0.90062 0.91273 0.91064 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.83 37.16 0.37 -0.32 16 2 C -0.14 -0.83 5.39 -26.73 -0.14 -0.97 16 3 C 0.08 0.52 3.38 -27.88 -0.09 0.43 16 4 H 0.11 0.42 5.37 -51.93 -0.28 0.14 16 5 F -0.19 -1.78 16.75 2.25 0.04 -1.74 16 6 C 0.49 4.55 7.05 -10.99 -0.08 4.47 16 7 O -0.52 -6.68 16.00 5.55 0.09 -6.59 16 8 N -0.60 -4.38 2.98 -173.03 -0.52 -4.90 16 9 C 0.10 0.48 6.29 -3.93 -0.02 0.45 16 10 C -0.14 -0.78 5.13 -26.83 -0.14 -0.92 16 11 C -0.08 -0.55 2.15 -90.58 -0.20 -0.75 16 12 C -0.11 -0.99 4.94 -26.73 -0.13 -1.12 16 13 C 0.06 0.60 5.44 -3.83 -0.02 0.58 16 14 N -0.67 -10.00 6.13 -115.06 -0.70 -10.71 16 15 C 0.05 0.78 6.17 -4.97 -0.03 0.75 16 16 C 0.45 10.15 7.82 -10.98 -0.09 10.06 16 17 O -0.56 -15.19 15.78 5.55 0.09 -15.10 16 18 N -0.59 -14.00 5.09 -10.96 -0.06 -14.06 16 19 C -0.31 -8.65 10.16 -14.93 -0.15 -8.80 16 20 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.68 13.96 55.50 0.77 -24.90 16 23 Si 0.88 19.18 27.74 -169.99 -4.72 14.46 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 27 C -0.13 -0.88 5.36 -26.62 -0.14 -1.02 16 28 C 0.11 0.78 6.42 -3.71 -0.02 0.75 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.33 7.94 -51.93 -0.41 -0.08 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.65 8.04 -51.93 -0.42 0.23 16 34 H 0.09 0.29 5.16 -51.93 -0.27 0.02 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.44 6.50 -51.93 -0.34 0.10 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.03 0.25 6.53 -51.93 -0.34 -0.09 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.35 5.47 8.43 -39.29 -0.33 5.14 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 47 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.09 0.80 7.03 -51.93 -0.37 0.43 16 LS Contribution 406.62 15.07 6.13 6.13 Total: -1.00 -35.14 406.62 -8.33 -43.47 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -8.46 Total: 9.31 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -0.99 Total: 4.63 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.50 Total: -54.57 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: 0.18 Total: -21.69 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.72 Total: 14.46 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.14 -8.33 -43.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269894725.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.768 kcal (2) G-P(sol) polarization free energy of solvation -35.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds