Wall clock time and date at job start Wed Apr 1 2020 02:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47051 * 2 1 4 4 H 1.09000 * 109.46999 * 55.00254 * 3 2 1 5 5 F 1.39895 * 109.47746 * 295.00259 * 3 2 1 6 6 C 1.50704 * 109.47261 * 175.00002 * 3 2 1 7 7 O 1.21286 * 119.99816 * 43.46497 * 6 3 2 8 8 N 1.34772 * 120.00340 * 223.47437 * 6 3 2 9 9 C 1.46928 * 120.62951 * 4.09875 * 8 6 3 10 10 C 1.52762 * 109.00536 * 233.58682 * 9 8 6 11 11 C 1.53041 * 109.38565 * 305.58829 * 10 9 8 12 12 C 1.53001 * 109.44866 * 181.25303 * 11 10 9 13 13 C 1.53006 * 109.47229 * 64.93995 * 12 11 10 14 14 N 1.46892 * 109.47240 * 179.97438 * 13 12 11 15 15 C 1.46897 * 110.99731 * 179.97438 * 14 13 12 16 16 C 1.50707 * 109.46882 * 180.02562 * 15 14 13 17 17 O 1.21286 * 120.00081 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99581 * 180.02562 * 16 15 14 19 19 C 1.37098 * 119.99801 * 179.97438 * 18 16 15 20 20 H 1.08005 * 119.99957 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00339 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00241 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99828 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47136 * 90.00087 * 23 21 19 25 25 H 1.48496 * 109.47076 * 210.00078 * 23 21 19 26 26 H 1.48496 * 109.46761 * 329.99744 * 23 21 19 27 27 C 1.53036 * 109.53580 * 61.24076 * 11 10 9 28 28 C 1.46929 * 120.63061 * 184.38659 * 8 6 3 29 29 H 1.08996 * 109.47475 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47445 * 299.99666 * 1 2 3 31 31 H 1.08999 * 109.47200 * 59.99547 * 1 2 3 32 32 H 1.08999 * 109.47200 * 120.00453 * 2 1 3 33 33 H 1.08998 * 109.46892 * 240.00203 * 2 1 3 34 34 H 1.08995 * 109.58366 * 353.41946 * 9 8 6 35 35 H 1.08994 * 109.58704 * 113.84966 * 9 8 6 36 36 H 1.08998 * 109.56309 * 185.54931 * 10 9 8 37 37 H 1.09005 * 109.35915 * 65.49976 * 10 9 8 38 38 H 1.08992 * 109.45889 * 301.22346 * 11 10 9 39 39 H 1.09000 * 109.46685 * 184.93805 * 12 11 10 40 40 H 1.08994 * 109.47110 * 304.94105 * 12 11 10 41 41 H 1.09000 * 109.46627 * 300.00339 * 13 12 11 42 42 H 1.09003 * 109.46882 * 59.99429 * 13 12 11 43 43 H 1.00909 * 110.99600 * 56.05160 * 14 13 12 44 44 H 1.08996 * 109.47721 * 300.00146 * 15 14 13 45 45 H 1.09001 * 109.47177 * 60.00828 * 15 14 13 46 46 H 0.96994 * 120.00868 * 359.97438 * 18 16 15 47 47 H 0.97002 * 120.00241 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.49828 * 178.68071 * 27 11 10 49 49 H 1.08999 * 109.52714 * 58.60563 * 27 11 10 50 50 H 1.09002 * 109.58237 * 246.15347 * 28 8 6 51 51 H 1.09003 * 109.58535 * 6.42933 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 9 1.6699 2.0680 -1.1953 6 6 3.5419 1.4443 0.1238 7 8 4.2047 0.6620 -0.5240 8 7 4.1485 2.3151 0.9546 9 6 3.3565 3.2072 1.8123 10 6 3.8066 4.6485 1.5809 11 6 5.3186 4.7492 1.7950 12 6 5.7661 6.1984 1.5942 13 6 5.1426 7.0797 2.6785 14 7 5.5728 8.4710 2.4861 15 6 4.9917 9.3482 3.5111 16 6 5.4540 10.7641 3.2813 17 8 6.1942 11.0175 2.3546 18 7 5.0448 11.7487 4.1057 19 6 5.4657 13.0366 3.8970 20 1 6.1255 13.2622 3.0722 21 6 5.0435 14.0519 4.7465 22 7 5.4465 15.2865 4.5462 23 14 3.9028 13.6617 6.1735 24 1 4.7092 13.3300 7.3755 25 1 3.0481 14.8415 6.4609 26 1 3.0442 12.5033 5.8183 27 6 6.0390 3.8490 0.7887 28 6 5.6144 2.3947 1.0151 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.3000 3.1111 1.5624 35 1 3.5125 2.9420 2.8579 36 1 3.2951 5.3076 2.2823 37 1 3.5632 4.9436 0.5602 38 1 5.5638 4.4304 2.8080 39 1 6.8527 6.2555 1.6599 40 1 5.4427 6.5460 0.6131 41 1 4.0561 7.0225 2.6128 42 1 5.4661 6.7321 3.6597 43 1 5.3417 8.7960 1.5591 44 1 3.9042 9.3071 3.4506 45 1 5.3135 9.0163 4.4982 46 1 4.4525 11.5462 4.8466 47 1 5.1520 15.9952 5.1394 48 1 7.1165 3.9391 0.9263 49 1 5.7752 4.1514 -0.2247 50 1 5.9582 2.0619 1.9945 51 1 6.0471 1.7607 0.2411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269894725.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:46 Heat of formation + Delta-G solvation = -155.238286 kcal Electronic energy + Delta-G solvation = -29628.356545 eV Core-core repulsion = 25282.464954 eV Total energy + Delta-G solvation = -4345.891590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.00165 -41.31467 -40.29905 -39.11266 -37.10020 -35.96975 -35.13288 -34.69852 -33.73783 -32.35267 -30.88576 -28.97642 -27.99529 -26.12263 -24.69583 -24.39620 -23.25727 -22.27989 -21.44509 -21.19228 -20.25804 -20.16556 -18.95436 -17.83053 -17.74860 -17.16488 -17.10227 -16.70990 -16.55827 -15.95639 -15.77724 -15.64916 -15.55439 -15.34307 -15.08792 -14.85341 -14.72653 -14.65394 -14.34560 -14.14072 -13.97815 -13.90384 -13.63983 -13.41653 -13.19543 -13.15076 -12.92505 -12.83177 -12.53780 -12.40286 -12.25056 -12.04717 -12.03515 -11.97327 -11.88003 -11.69305 -11.50825 -11.35511 -11.26524 -10.74393 -10.42803 -10.24465 -9.79737 -9.25131 -8.40727 -6.02175 1.21337 1.30971 1.37240 1.46109 1.74789 1.96633 2.24222 2.75847 3.09378 3.15565 3.41702 3.43372 3.44977 3.78114 3.81020 3.85964 3.90677 4.07493 4.17843 4.27353 4.30465 4.37503 4.41370 4.43081 4.48604 4.51730 4.57825 4.63606 4.69805 4.72689 4.79587 4.83967 4.91348 4.98246 5.01349 5.06547 5.12450 5.15881 5.17537 5.32517 5.33962 5.48764 5.53077 5.54326 5.92252 6.11807 6.16461 6.42717 6.60616 6.85194 6.88638 7.40409 7.97599 8.76987 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.020297 B = 0.001604 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.212768 B =17446.995398 C =18209.096114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.139 4.139 3 C 0.074 3.926 4 H 0.142 0.858 5 F -0.205 7.205 6 C 0.486 3.514 7 O -0.571 6.571 8 N -0.599 5.599 9 C 0.095 3.905 10 C -0.134 4.134 11 C -0.076 4.076 12 C -0.107 4.107 13 C 0.062 3.938 14 N -0.694 5.694 15 C 0.064 3.936 16 C 0.446 3.554 17 O -0.617 6.617 18 N -0.590 5.590 19 C -0.332 4.332 20 H 0.053 0.947 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.257 1.257 25 H -0.276 1.276 26 H -0.229 1.229 27 C -0.125 4.125 28 C 0.109 3.891 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.341 0.659 44 H 0.078 0.922 45 H 0.115 0.885 46 H 0.391 0.609 47 H 0.279 0.721 48 H 0.085 0.915 49 H 0.049 0.951 50 H 0.091 0.909 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.006 -34.216 1.014 36.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C 0.036 3.964 4 H 0.159 0.841 5 F -0.186 7.186 6 C 0.272 3.728 7 O -0.450 6.450 8 N -0.331 5.331 9 C -0.026 4.026 10 C -0.171 4.171 11 C -0.095 4.095 12 C -0.145 4.145 13 C -0.066 4.066 14 N -0.327 5.327 15 C -0.069 4.069 16 C 0.234 3.766 17 O -0.502 6.502 18 N -0.232 5.232 19 C -0.461 4.461 20 H 0.071 0.929 21 C -0.215 4.215 22 N -0.576 5.576 23 Si 0.787 3.213 24 H -0.181 1.181 25 H -0.201 1.201 26 H -0.152 1.152 27 C -0.163 4.163 28 C -0.013 4.013 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.159 0.841 44 H 0.096 0.904 45 H 0.133 0.867 46 H 0.226 0.774 47 H 0.089 0.911 48 H 0.103 0.897 49 H 0.068 0.932 50 H 0.109 0.891 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.566 -34.307 0.427 36.207 hybrid contribution -0.811 0.898 -0.252 1.236 sum -12.378 -33.409 0.175 35.628 Atomic orbital electron populations 1.21776 0.92597 1.03448 1.02995 1.21996 0.98494 0.92757 1.04512 1.22063 0.90636 0.97511 0.86225 0.84088 1.92861 1.91953 1.84220 1.49519 1.21466 0.91446 0.80539 0.79323 1.90702 1.67334 1.40560 1.46367 1.48359 1.07915 1.36699 1.40153 1.22175 0.96088 0.88854 0.95514 1.22003 0.96013 0.96251 1.02882 1.21053 0.94861 0.93478 1.00122 1.21514 1.00898 0.94034 0.98061 1.22127 0.98100 0.86148 1.00234 1.60083 1.63853 1.02570 1.06163 1.21626 0.98601 0.88077 0.98570 1.21116 0.83716 0.88191 0.83608 1.90544 1.40653 1.84573 1.34420 1.42025 1.45556 1.06777 1.28851 1.19017 1.28903 0.83923 1.14250 0.92898 1.26158 0.99645 0.94089 1.01558 1.69813 1.46121 1.01447 1.40189 0.85333 0.78484 0.79770 0.77714 1.18119 1.20089 1.15188 1.21918 1.01357 0.93661 0.99379 1.21697 0.78925 0.97376 1.03265 0.90858 0.90419 0.92850 0.88619 0.91795 0.87762 0.87963 0.88222 0.92671 0.88969 0.92053 0.93030 0.93319 0.89919 0.84061 0.90435 0.86699 0.77376 0.91146 0.89672 0.93180 0.89120 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.83 71.98 0.71 -0.35 16 2 C -0.14 -1.50 5.39 30.59 0.16 -1.34 16 3 C 0.07 0.91 3.38 29.85 0.10 1.02 16 4 H 0.14 0.64 5.37 -2.39 -0.01 0.62 16 5 F -0.20 -3.76 16.75 44.97 0.75 -3.00 16 6 C 0.49 8.64 7.05 87.66 0.62 9.25 16 7 O -0.57 -15.14 16.00 -3.05 -0.05 -15.19 16 8 N -0.60 -7.64 2.98 -819.74 -2.44 -10.08 16 9 C 0.09 0.55 6.29 86.22 0.54 1.09 16 10 C -0.13 -1.09 5.13 30.53 0.16 -0.93 16 11 C -0.08 -0.79 2.15 -10.77 -0.02 -0.81 16 12 C -0.11 -1.68 4.94 30.60 0.15 -1.53 16 13 C 0.06 1.05 5.44 86.31 0.47 1.52 16 14 N -0.69 -19.20 6.13 -517.93 -3.17 -22.37 16 15 C 0.06 1.83 6.17 85.56 0.53 2.35 16 16 C 0.45 19.87 7.82 87.66 0.69 20.56 16 17 O -0.62 -34.38 15.78 -3.05 -0.05 -34.43 16 18 N -0.59 -27.46 5.09 -306.98 -1.56 -29.02 16 19 C -0.33 -19.42 10.16 84.04 0.85 -18.57 16 20 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 21 C -0.02 -0.88 5.50 84.93 0.47 -0.42 16 22 N -0.94 -56.26 13.96 21.66 0.30 -55.96 16 23 Si 0.97 37.98 27.74 68.60 1.90 39.88 16 24 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 25 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 27 C -0.12 -1.58 5.36 30.67 0.16 -1.41 16 28 C 0.11 1.43 6.42 86.36 0.55 1.99 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.08 0.26 8.14 -2.38 -0.02 0.25 16 31 H 0.05 0.49 7.94 -2.39 -0.02 0.47 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.99 8.04 -2.39 -0.02 0.97 16 34 H 0.10 0.24 5.16 -2.39 -0.01 0.23 16 35 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.10 0.54 6.50 -2.39 -0.02 0.53 16 37 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.05 0.65 6.53 -2.39 -0.02 0.63 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.34 10.39 8.43 -89.69 -0.76 9.64 16 44 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 46 H 0.39 14.77 5.76 -92.71 -0.53 14.24 16 47 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 48 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.07 1.27 7.03 -2.39 -0.02 1.25 16 Total: -1.00 -84.83 406.62 1.42 -83.41 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: -0.40 Total: 34.34 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 6.14 Total: 12.43 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -6.88 Total: -117.43 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.10 Total: -49.62 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.75 Total: -3.00 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 1.90 Total: 39.88 kcal Total: -84.83 1.42 -83.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269894725.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.827 kcal (2) G-P(sol) polarization free energy of solvation -84.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds