Wall clock time and date at job start Wed Apr 1 2020 01:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46506 * 119.99813 * 2 1 4 4 C 1.52990 * 109.47050 * 269.99787 * 3 2 1 5 5 C 1.53000 * 109.47172 * 300.00166 * 4 3 2 6 6 C 1.53000 * 109.47156 * 59.99987 * 4 3 2 7 7 C 1.52998 * 109.47170 * 180.02562 * 4 3 2 8 8 N 1.46497 * 109.47382 * 180.02562 * 7 4 3 9 9 C 1.36940 * 120.00397 * 180.02562 * 8 7 4 10 10 H 1.07999 * 119.99859 * 0.02562 * 9 8 7 11 11 C 1.38812 * 120.00434 * 180.02562 * 9 8 7 12 12 N 1.31618 * 120.00121 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99746 * 359.97438 * 11 9 8 14 14 H 1.48507 * 109.46775 * 90.00428 * 13 11 9 15 15 H 1.48501 * 109.47106 * 210.00067 * 13 11 9 16 16 H 1.48498 * 109.47288 * 330.00651 * 13 11 9 17 17 C 1.34775 * 120.00218 * 179.97438 * 2 1 3 18 18 O 1.21278 * 120.00033 * 179.97438 * 17 2 1 19 19 C 1.50702 * 119.99880 * 0.02562 * 17 2 1 20 20 N 1.46500 * 109.47226 * 179.97438 * 19 17 2 21 21 C 1.36831 * 125.06347 * 265.30227 * 20 19 17 22 22 C 1.34242 * 109.92830 * 180.14700 * 21 20 19 23 23 C 1.46491 * 106.99712 * 359.60332 * 22 21 20 24 24 C 1.39630 * 134.02857 * 180.21673 * 23 22 21 25 25 C 1.36627 * 119.76400 * 179.97438 * 24 23 22 26 26 C 1.38830 * 120.52420 * 0.03970 * 25 24 23 27 27 C 1.37746 * 120.67032 * 359.97438 * 26 25 24 28 28 C 1.37685 * 125.06129 * 85.00005 * 20 19 17 29 29 H 1.08995 * 109.46735 * 269.99805 * 1 2 3 30 30 H 1.09000 * 109.46868 * 30.00196 * 1 2 3 31 31 H 1.09002 * 109.46741 * 149.99818 * 1 2 3 32 32 H 1.08996 * 109.47173 * 30.00017 * 3 2 1 33 33 H 1.09002 * 109.46873 * 150.00227 * 3 2 1 34 34 H 1.08999 * 109.47548 * 60.00621 * 5 4 3 35 35 H 1.09007 * 109.46999 * 180.02562 * 5 4 3 36 36 H 1.08994 * 109.47491 * 299.99665 * 5 4 3 37 37 H 1.08998 * 109.47300 * 60.00204 * 6 4 3 38 38 H 1.09007 * 109.46968 * 179.97438 * 6 4 3 39 39 H 1.08996 * 109.47704 * 299.99870 * 6 4 3 40 40 H 1.08996 * 109.47035 * 300.00218 * 7 4 3 41 41 H 1.09000 * 109.47101 * 59.99853 * 7 4 3 42 42 H 0.97005 * 119.99981 * 0.02562 * 8 7 4 43 43 H 0.96999 * 119.99960 * 179.97438 * 12 11 9 44 44 H 1.09008 * 109.47109 * 60.00030 * 19 17 2 45 45 H 1.08998 * 109.47260 * 299.99591 * 19 17 2 46 46 H 1.07993 * 125.03787 * 0.02931 * 21 20 19 47 47 H 1.08002 * 126.50514 * 179.87275 * 22 21 20 48 48 H 1.07993 * 120.11544 * 0.02562 * 24 23 22 49 49 H 1.07994 * 119.73661 * 180.02562 * 25 24 23 50 50 H 1.08005 * 119.66510 * 180.02562 * 26 25 24 51 51 H 1.08006 * 120.11165 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4424 5 6 3.2794 0.6441 -2.1636 6 6 1.1157 1.8933 -2.1637 7 6 3.2180 3.0351 -1.4424 8 7 3.4617 3.4583 -2.8236 9 6 4.1357 4.6238 -3.0739 10 1 4.4879 5.2308 -2.2530 11 6 4.3661 5.0251 -4.3826 12 7 5.0134 6.1456 -4.6231 13 14 3.7574 3.9748 -5.8025 14 1 2.3839 4.3973 -6.1773 15 1 4.6627 4.1445 -6.9673 16 1 3.7416 2.5480 -5.3915 17 6 2.1390 -1.1672 0.0005 18 8 3.3517 -1.1671 0.0001 19 6 1.3855 -2.4723 0.0005 20 7 2.3375 -3.5858 0.0005 21 6 2.7786 -4.2429 -1.1157 22 6 3.6400 -5.2113 -0.7661 23 6 3.7677 -5.1647 0.6925 24 6 4.5021 -5.8985 1.6262 25 6 4.4001 -5.5997 2.9555 26 6 3.5711 -4.5725 3.3857 27 6 2.8376 -3.8362 2.4817 28 6 2.9261 -4.1231 1.1232 29 1 -0.3632 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6085 2.0284 0.5138 33 1 3.1500 1.1384 0.5138 34 1 2.7345 -0.2999 -2.1638 35 1 3.4615 0.9590 -3.1912 36 1 4.2318 0.5138 -1.6499 37 1 0.5266 2.6529 -1.6500 38 1 1.2974 2.2084 -3.1913 39 1 0.5707 0.9494 -2.1638 40 1 2.6293 3.7949 -0.9285 41 1 4.1705 2.9044 -0.9287 42 1 3.1456 2.9129 -3.5609 43 1 5.1748 6.4258 -5.5376 44 1 0.7591 -2.5302 -0.8898 45 1 0.7585 -2.5299 0.8903 46 1 2.4768 -4.0173 -2.1278 47 1 4.1466 -5.8924 -1.4339 48 1 5.1491 -6.6988 1.2988 49 1 4.9686 -6.1672 3.6773 50 1 3.5013 -4.3479 4.4399 51 1 2.1952 -3.0393 2.8264 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275750785.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:04 Heat of formation + Delta-G solvation = 53.944375 kcal Electronic energy + Delta-G solvation = -30450.838255 eV Core-core repulsion = 26544.786730 eV Total energy + Delta-G solvation = -3906.051525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.63082 -40.22949 -37.69695 -36.99313 -35.35095 -33.45598 -32.88282 -30.88494 -30.52553 -29.05529 -28.25322 -27.65684 -26.68111 -26.06926 -25.07851 -22.87703 -22.17977 -21.70227 -20.68230 -19.58738 -18.70902 -17.66067 -17.59392 -17.35136 -16.72465 -16.06418 -15.91347 -15.56913 -14.77680 -14.64217 -14.26481 -14.18313 -14.12022 -13.85206 -13.71066 -13.39400 -13.30063 -13.21485 -13.01563 -12.83735 -12.76295 -12.52196 -12.29888 -12.25456 -11.78550 -11.73049 -11.45696 -11.37415 -11.33000 -11.01386 -10.90223 -10.83260 -10.49525 -10.41370 -10.15220 -9.97806 -9.70366 -9.56865 -8.88744 -8.77025 -8.30550 -7.81967 -7.20292 -5.75723 -3.10204 0.99462 1.48372 2.28040 2.33946 2.61739 2.91934 3.35960 3.38391 3.44174 3.79581 4.13309 4.28087 4.46959 4.56886 4.59349 4.63036 4.74835 4.85585 4.90018 4.96180 4.98674 5.12025 5.19512 5.28333 5.31279 5.32132 5.48206 5.50000 5.57890 5.63630 5.64743 5.76009 5.79459 5.82376 5.90979 5.91956 6.05694 6.18694 6.29972 6.31631 6.41086 6.46594 6.53493 6.61438 6.61973 6.63274 6.71202 6.79691 6.99576 7.06388 7.16376 7.93512 8.01324 8.43701 9.23002 9.95428 10.15823 11.43005 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017081 B = 0.002466 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.823871 B =11351.450226 C =11757.423665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.608 5.608 3 C 0.129 3.871 4 C -0.090 4.090 5 C -0.123 4.123 6 C -0.137 4.137 7 C 0.170 3.830 8 N -0.751 5.751 9 C -0.240 4.240 10 H 0.090 0.910 11 C 0.003 3.997 12 N -0.935 5.935 13 Si 0.881 3.119 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.278 1.278 17 C 0.489 3.511 18 O -0.506 6.506 19 C 0.093 3.907 20 N -0.469 5.469 21 C 0.061 3.939 22 C -0.203 4.203 23 C -0.107 4.107 24 C -0.072 4.072 25 C -0.150 4.150 26 C -0.102 4.102 27 C -0.125 4.125 28 C 0.110 3.890 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.027 0.973 41 H 0.028 0.972 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.117 0.883 45 H 0.112 0.888 46 H 0.166 0.834 47 H 0.147 0.853 48 H 0.120 0.880 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.869 -24.698 14.076 31.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.342 5.342 3 C 0.006 3.994 4 C -0.091 4.091 5 C -0.180 4.180 6 C -0.195 4.195 7 C 0.042 3.958 8 N -0.398 5.398 9 C -0.370 4.370 10 H 0.108 0.892 11 C -0.192 4.192 12 N -0.583 5.583 13 Si 0.712 3.288 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 C 0.274 3.726 18 O -0.380 6.380 19 C -0.033 4.033 20 N -0.152 5.152 21 C -0.063 4.063 22 C -0.228 4.228 23 C -0.112 4.112 24 C -0.090 4.090 25 C -0.169 4.169 26 C -0.121 4.121 27 C -0.146 4.146 28 C 0.004 3.996 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.195 0.805 43 H 0.069 0.931 44 H 0.135 0.865 45 H 0.130 0.870 46 H 0.183 0.817 47 H 0.164 0.836 48 H 0.138 0.862 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.312 -24.230 14.078 30.608 hybrid contribution -0.512 -0.364 -1.288 1.433 sum -12.824 -24.594 12.790 30.543 Atomic orbital electron populations 1.22022 0.79656 1.03873 1.01989 1.47791 1.06820 1.06082 1.73528 1.21559 0.97618 0.83342 0.96868 1.21167 0.96315 0.97087 0.94568 1.21726 0.99666 0.96238 1.00420 1.21908 0.96055 1.00195 1.01314 1.20551 0.96282 0.91104 0.87832 1.42724 1.69466 1.26144 1.01459 1.19069 1.27578 0.96840 0.93539 0.89236 1.24650 1.00567 0.97172 0.96813 1.69696 1.46210 1.23016 1.19399 0.86593 0.78470 0.80321 0.83428 1.21118 1.21678 1.20421 1.20819 0.88723 0.85357 0.77671 1.90815 1.13231 1.86621 1.47335 1.21634 0.91163 0.84449 1.06059 1.43382 1.38627 1.28029 1.05174 1.21766 0.98913 0.94731 0.90887 1.21649 1.04700 1.03420 0.92991 1.19201 1.00130 0.98133 0.93699 1.20256 0.97976 0.98650 0.92151 1.20597 1.01240 0.99489 0.95553 1.20764 0.96705 0.95812 0.98802 1.19972 1.03289 1.01828 0.89502 1.18173 0.97140 0.96025 0.88219 0.92351 0.89673 0.91431 0.90200 0.89580 0.94391 0.92835 0.92119 0.92651 0.92240 0.93383 0.95542 0.95443 0.80504 0.93098 0.86474 0.87007 0.81659 0.83560 0.86187 0.86206 0.85963 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 9.15 59.85 0.55 0.94 16 2 N -0.61 -6.00 2.40 -181.57 -0.44 -6.44 16 3 C 0.13 1.59 4.60 -4.04 -0.02 1.57 16 4 C -0.09 -1.36 0.60 -154.51 -0.09 -1.45 16 5 C -0.12 -2.07 6.96 37.16 0.26 -1.81 16 6 C -0.14 -1.87 7.05 37.16 0.26 -1.60 16 7 C 0.17 3.30 5.15 -4.04 -0.02 3.28 16 8 N -0.75 -18.01 4.81 -59.91 -0.29 -18.29 16 9 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 10 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 11 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 12 N -0.93 -29.77 13.97 55.49 0.78 -29.00 16 13 Si 0.88 22.44 27.74 -169.99 -4.71 17.72 16 14 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 16 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 17 C 0.49 5.62 6.15 -10.99 -0.07 5.56 16 18 O -0.51 -8.25 14.19 5.56 0.08 -8.17 16 19 C 0.09 0.75 5.03 -5.19 -0.03 0.72 16 20 N -0.47 -5.09 2.27 -115.71 -0.26 -5.35 16 21 C 0.06 0.63 11.27 -16.73 -0.19 0.44 16 22 C -0.20 -2.22 11.08 -37.67 -0.42 -2.64 16 23 C -0.11 -1.32 6.37 -105.14 -0.67 -1.99 16 24 C -0.07 -0.77 10.05 -39.64 -0.40 -1.17 16 25 C -0.15 -1.46 9.97 -39.94 -0.40 -1.85 16 26 C -0.10 -1.00 10.01 -39.54 -0.40 -1.40 16 27 C -0.13 -1.38 10.00 -39.43 -0.39 -1.77 16 28 C 0.11 1.35 6.80 -83.99 -0.57 0.77 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.51 6.05 -51.93 -0.31 0.20 16 31 H 0.07 0.25 6.44 -51.93 -0.33 -0.08 16 32 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.09 1.23 7.42 -51.93 -0.39 0.85 16 34 H 0.04 0.58 6.15 -51.93 -0.32 0.26 16 35 H 0.05 1.00 6.86 -51.92 -0.36 0.65 16 36 H 0.06 1.14 7.73 -51.93 -0.40 0.73 16 37 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.06 0.96 6.86 -51.92 -0.36 0.60 16 39 H 0.05 0.52 5.99 -51.93 -0.31 0.21 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.36 8.49 3.22 -40.82 -0.13 8.36 16 43 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 44 H 0.12 0.62 7.38 -51.92 -0.38 0.24 16 45 H 0.11 0.64 8.11 -51.93 -0.42 0.22 16 46 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 47 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 48 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 49 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 50 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 51 H 0.11 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 399.84 15.07 6.03 6.03 Total: -1.00 -36.81 399.84 -9.62 -46.42 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.95 Total: 6.53 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -2.85 Total: -9.45 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.21 Total: -59.09 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.08 Total: -8.17 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.81 -9.62 -46.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275750785.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.369 kcal (2) G-P(sol) polarization free energy of solvation -36.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds