Wall clock time and date at job start Wed Apr 1 2020 03:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 115.56253 * 2 1 4 4 C 1.53078 * 117.49548 * 214.28221 * 2 1 3 5 5 C 1.53001 * 59.98545 * 252.52077 * 4 2 1 6 6 H 1.09000 * 117.50275 * 107.50336 * 5 4 2 7 7 C 1.53000 * 117.49723 * 252.50052 * 5 4 2 8 8 N 1.46905 * 109.47201 * 243.75182 * 7 5 4 9 9 C 1.46937 * 110.99907 * 190.65747 * 8 7 5 10 10 C 1.53513 * 109.59993 * 163.98490 * 9 8 7 11 11 C 1.50883 * 107.83051 * 49.09220 * 10 9 8 12 12 C 1.38971 * 128.57122 * 164.16060 * 11 10 9 13 13 C 1.38135 * 106.93079 * 180.21193 * 12 11 10 14 14 C 1.46675 * 126.19825 * 179.74000 * 13 12 11 15 15 O 1.21693 * 119.99754 * 0.02764 * 14 13 12 16 16 N 1.34783 * 120.00297 * 180.02562 * 14 13 12 17 17 C 1.47067 * 136.05338 * 359.63200 * 16 14 13 18 18 C 1.53758 * 87.88515 * 152.95875 * 17 16 14 19 19 C 1.50701 * 114.26394 * 139.78944 * 18 17 16 20 20 H 1.08000 * 120.00165 * 266.47782 * 19 18 17 21 21 C 1.37878 * 119.99875 * 86.47950 * 19 18 17 22 22 N 1.31517 * 119.99761 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00052 * 359.97438 * 21 19 18 24 24 H 1.48492 * 109.47440 * 90.00148 * 23 21 19 25 25 H 1.48506 * 109.46979 * 210.00286 * 23 21 19 26 26 H 1.48499 * 109.46921 * 329.99575 * 23 21 19 27 27 C 1.47065 * 136.05927 * 180.02562 * 16 14 13 28 28 N 1.37888 * 107.61120 * 0.02562 * 13 12 11 29 29 H 0.97000 * 125.69571 * 179.88120 * 28 13 12 30 30 C 1.34912 * 108.60913 * 359.92799 * 28 13 12 31 31 C 1.47242 * 111.00353 * 66.03890 * 8 7 5 32 32 H 1.09001 * 109.47585 * 274.31768 * 1 2 3 33 33 H 1.09001 * 109.47086 * 34.31753 * 1 2 3 34 34 H 1.09004 * 109.47218 * 154.31298 * 1 2 3 35 35 H 1.08998 * 117.51050 * 145.03910 * 4 2 1 36 36 H 1.09000 * 117.50897 * 359.97438 * 4 2 1 37 37 H 1.09000 * 109.47547 * 123.74501 * 7 5 4 38 38 H 1.09007 * 109.47116 * 3.74897 * 7 5 4 39 39 H 1.09000 * 109.44939 * 284.01227 * 9 8 7 40 40 H 1.09005 * 109.45451 * 43.93452 * 9 8 7 41 41 H 1.09002 * 109.76672 * 289.51405 * 10 9 8 42 42 H 1.08999 * 109.80749 * 168.69017 * 10 9 8 43 43 H 1.08000 * 126.54272 * 0.23136 * 12 11 10 44 44 H 1.08997 * 113.46521 * 267.69337 * 17 16 14 45 45 H 1.09006 * 113.46860 * 38.13450 * 17 16 14 46 46 H 1.08997 * 114.39839 * 272.67455 * 18 17 16 47 47 H 0.97001 * 120.00106 * 180.02562 * 22 21 19 48 48 H 1.09002 * 113.46390 * 321.86736 * 27 16 14 49 49 H 1.08996 * 113.46747 * 92.24947 * 27 16 14 50 50 H 1.09009 * 109.69741 * 56.22293 * 31 8 7 51 51 H 1.09001 * 109.73957 * 295.63892 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2367 -1.1220 -0.7648 5 6 2.2363 -1.1210 0.7652 6 1 1.6111 -1.8582 1.2688 7 6 3.5488 -0.7759 1.4717 8 7 4.0107 -1.9384 2.2419 9 6 5.1229 -1.5734 3.1301 10 6 5.3168 -2.6679 4.1890 11 6 5.3558 -3.9977 3.4771 12 6 5.8024 -5.2237 3.9553 13 6 5.6412 -6.1375 2.9321 14 6 5.9848 -7.5626 2.9813 15 8 6.4598 -8.0393 3.9952 16 7 5.7742 -8.3442 1.9036 17 6 5.2348 -8.1563 0.5484 18 6 6.1091 -9.3382 0.0980 19 6 5.4363 -10.2703 -0.8764 20 1 4.9191 -11.1472 -0.5157 21 6 5.4809 -10.0037 -2.2284 22 7 4.8933 -10.8169 -3.0788 23 14 6.3748 -8.4867 -2.8522 24 1 7.7946 -8.8258 -3.1246 25 1 5.7304 -8.0119 -4.1031 26 1 6.3097 -7.4165 -1.8249 27 6 5.9764 -9.7617 1.5677 28 7 5.1049 -5.4660 1.8537 29 1 4.8871 -5.8586 0.9939 30 6 4.9347 -4.1716 2.1939 31 6 4.3752 -3.0516 1.3498 32 1 -0.3634 0.0774 1.0247 33 1 -0.3633 0.8488 -0.5794 34 1 -0.3634 -0.9261 -0.4455 35 1 3.1719 -0.8767 -1.2681 36 1 1.6116 -1.8600 -1.2674 37 1 3.3885 0.0659 2.1452 38 1 4.3016 -0.5093 0.7298 39 1 6.0362 -1.4695 2.5443 40 1 4.8986 -0.6273 3.6228 41 1 4.4854 -2.6506 4.8936 42 1 6.2548 -2.5059 4.7201 43 1 6.1995 -5.4241 4.9395 44 1 4.1655 -8.3549 0.4755 45 1 5.5196 -7.2065 0.0956 46 1 7.1211 -9.0624 -0.1983 47 1 4.9250 -10.6296 -4.0300 48 1 6.8932 -10.1797 1.9836 49 1 5.1029 -10.3832 1.7642 50 1 5.1286 -2.7187 0.6358 51 1 3.4912 -3.3999 0.8156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277142666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:52 Heat of formation + Delta-G solvation = 75.047440 kcal Electronic energy + Delta-G solvation = -29806.335514 eV Core-core repulsion = 25901.199087 eV Total energy + Delta-G solvation = -3905.136427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.57318 -39.57273 -38.86893 -37.30622 -36.89390 -33.05341 -32.72215 -30.82149 -30.08286 -29.27771 -28.82643 -26.77868 -25.56807 -25.30269 -24.01128 -22.57803 -21.46910 -21.29806 -20.55380 -19.96147 -19.12153 -18.66394 -17.46928 -17.10406 -16.13330 -16.09411 -15.60660 -15.42309 -15.10721 -14.80032 -14.68058 -14.23760 -13.91248 -13.86464 -13.55985 -13.45550 -13.28647 -13.10386 -12.98452 -12.85907 -12.70786 -12.47461 -12.32661 -11.99459 -11.96958 -11.76260 -11.71402 -11.69305 -11.20132 -11.10912 -10.98415 -10.82248 -10.24633 -10.22655 -10.07266 -10.01986 -9.52481 -9.31339 -8.81875 -8.77898 -8.61828 -8.25840 -7.79218 -6.31384 -4.34658 1.63918 2.71385 2.97069 3.09506 3.17238 3.20219 3.31599 3.35634 3.62229 3.72497 4.19214 4.33072 4.49448 4.53565 4.64896 4.75413 4.83163 4.91030 4.95336 4.96829 5.00375 5.13249 5.18340 5.19128 5.29897 5.39039 5.44758 5.45275 5.48096 5.51664 5.52331 5.58438 5.69696 5.76453 5.80221 5.87963 5.92375 5.98512 6.00259 6.01462 6.09885 6.18599 6.21124 6.27838 6.42243 6.65440 6.76400 6.92418 7.01180 7.08533 7.42544 7.46026 8.17545 8.27207 8.54381 8.73129 9.28984 10.80516 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.003125 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.246938 B = 8958.075502 C =11395.173560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.150 4.150 3 H 0.102 0.898 4 C -0.181 4.181 5 C -0.145 4.145 6 H 0.114 0.886 7 C 0.089 3.911 8 N -0.530 5.530 9 C 0.056 3.944 10 C -0.038 4.038 11 C -0.169 4.169 12 C -0.105 4.105 13 C -0.037 4.037 14 C 0.607 3.393 15 O -0.548 6.548 16 N -0.647 5.647 17 C 0.076 3.924 18 C -0.002 4.002 19 C -0.514 4.514 20 H 0.082 0.918 21 C 0.078 3.922 22 N -0.888 5.888 23 Si 0.877 3.123 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.266 1.266 27 C 0.117 3.883 28 N -0.523 5.523 29 H 0.417 0.583 30 C 0.036 3.964 31 C 0.129 3.871 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.268 0.732 48 H 0.065 0.935 49 H 0.083 0.917 50 H 0.050 0.950 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 23.804 6.853 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.169 4.169 3 H 0.120 0.880 4 C -0.218 4.218 5 C -0.164 4.164 6 H 0.132 0.868 7 C -0.039 4.039 8 N -0.254 5.254 9 C -0.072 4.072 10 C -0.076 4.076 11 C -0.175 4.175 12 C -0.132 4.132 13 C -0.151 4.151 14 C 0.398 3.602 15 O -0.426 6.426 16 N -0.381 5.381 17 C -0.047 4.047 18 C -0.021 4.021 19 C -0.552 4.552 20 H 0.100 0.900 21 C -0.126 4.126 22 N -0.525 5.525 23 Si 0.703 3.297 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.190 1.190 27 C -0.005 4.005 28 N -0.121 5.121 29 H 0.258 0.742 30 C -0.083 4.083 31 C 0.001 3.999 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.164 0.836 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.101 0.899 50 H 0.068 0.932 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.432 23.360 7.512 24.935 hybrid contribution 0.884 0.798 -1.557 1.960 sum -3.548 24.158 5.955 25.133 Atomic orbital electron populations 1.21360 0.92736 1.01980 1.01928 1.22370 0.95361 0.94429 1.04718 0.88035 1.23283 1.02625 1.01606 0.94262 1.22437 0.98616 1.02064 0.93262 0.86810 1.21686 0.94091 0.92265 0.95841 1.61773 1.36257 1.06801 1.20589 1.22184 0.91773 0.98485 0.94716 1.20079 1.01763 0.89533 0.96265 1.19125 1.08548 0.95687 0.94153 1.20836 1.03154 0.90767 0.98414 1.20537 1.12299 0.92845 0.89402 1.16578 0.78586 0.83432 0.81625 1.90786 1.47032 1.74323 1.30507 1.49880 1.61969 1.12930 1.13342 1.24111 1.00880 1.00724 0.78946 1.20782 0.95898 0.92959 0.92494 1.20764 1.34820 1.09657 0.89925 0.90008 1.25016 0.94592 0.96237 0.96780 1.69886 1.42817 1.36879 1.02876 0.86891 0.80500 0.83641 0.78624 1.19969 1.21126 1.19031 1.23118 1.00991 0.81278 0.95082 1.42007 1.48496 1.07648 1.13949 0.74236 1.20219 1.06236 0.85109 0.96760 1.20548 0.99074 0.88162 0.92103 0.92098 0.92257 0.92467 0.89030 0.88681 0.89974 0.94554 0.94426 0.90344 0.90521 0.90717 0.83616 0.89280 0.93243 0.92003 0.92239 0.91626 0.89897 0.93248 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.19 37.16 0.38 -0.39 16 2 C -0.15 -1.02 6.13 -90.58 -0.56 -1.57 16 3 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.18 -1.34 9.83 -26.69 -0.26 -1.60 16 5 C -0.15 -1.12 4.60 -90.62 -0.42 -1.53 16 6 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 7 C 0.09 0.68 5.24 -3.82 -0.02 0.66 16 8 N -0.53 -5.03 4.61 -235.22 -1.08 -6.11 16 9 C 0.06 0.49 5.53 -3.54 -0.02 0.47 16 10 C -0.04 -0.39 6.51 -27.53 -0.18 -0.57 16 11 C -0.17 -2.28 5.98 -105.00 -0.63 -2.91 16 12 C -0.11 -1.65 10.63 -39.35 -0.42 -2.07 16 13 C -0.04 -0.65 7.03 -81.77 -0.57 -1.22 16 14 C 0.61 12.14 8.04 -12.85 -0.10 12.04 16 15 O -0.55 -12.36 17.66 5.20 0.09 -12.26 16 16 N -0.65 -12.63 3.69 -186.60 -0.69 -13.32 16 17 C 0.08 1.44 6.35 -8.37 -0.05 1.39 16 18 C 0.00 -0.04 2.97 -91.11 -0.27 -0.31 16 19 C -0.51 -12.91 9.38 -34.44 -0.32 -13.23 16 20 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 21 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 22 N -0.89 -24.97 13.96 55.43 0.77 -24.20 16 23 Si 0.88 19.33 27.15 -169.99 -4.62 14.71 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -5.39 5.72 56.52 0.32 -5.07 16 27 C 0.12 2.31 8.17 -8.49 -0.07 2.24 16 28 N -0.52 -7.85 5.90 -5.46 -0.03 -7.88 16 29 H 0.42 5.92 5.85 -40.82 -0.24 5.68 16 30 C 0.04 0.48 7.13 -81.84 -0.58 -0.10 16 31 C 0.13 1.38 5.55 -4.65 -0.03 1.36 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 35 H 0.09 0.66 8.03 -51.93 -0.42 0.24 16 36 H 0.09 0.72 8.05 -51.93 -0.42 0.30 16 37 H 0.08 0.55 7.84 -51.93 -0.41 0.14 16 38 H 0.04 0.27 7.83 -51.93 -0.41 -0.14 16 39 H 0.04 0.34 8.07 -51.93 -0.42 -0.08 16 40 H 0.08 0.54 7.80 -51.93 -0.40 0.13 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 44 H 0.09 1.64 8.10 -51.93 -0.42 1.22 16 45 H 0.05 0.86 5.38 -51.93 -0.28 0.58 16 46 H 0.06 1.33 7.03 -51.93 -0.37 0.96 16 47 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 49 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 50 H 0.05 0.51 8.11 -51.92 -0.42 0.08 16 51 H 0.09 0.92 7.45 -51.93 -0.39 0.54 16 LS Contribution 404.59 15.07 6.10 6.10 Total: -1.00 -29.85 404.59 -12.11 -41.96 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.43 Total: 6.45 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -4.22 Total: -5.45 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -1.03 Total: -51.51 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.62 Total: 14.71 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.85 -12.11 -41.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277142666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.011 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds