Wall clock time and date at job start Wed Apr 1 2020 03:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 115.56253 * 2 1 4 4 C 1.53078 * 117.49548 * 214.28221 * 2 1 3 5 5 C 1.53001 * 59.98545 * 252.52077 * 4 2 1 6 6 H 1.09000 * 117.50275 * 107.50336 * 5 4 2 7 7 C 1.53000 * 117.49723 * 252.50052 * 5 4 2 8 8 N 1.46905 * 109.47201 * 243.75182 * 7 5 4 9 9 C 1.46937 * 110.99907 * 190.65747 * 8 7 5 10 10 C 1.53513 * 109.59993 * 163.98490 * 9 8 7 11 11 C 1.50883 * 107.83051 * 49.09220 * 10 9 8 12 12 C 1.38971 * 128.57122 * 164.16060 * 11 10 9 13 13 C 1.38135 * 106.93079 * 180.21193 * 12 11 10 14 14 C 1.46675 * 126.19825 * 179.74000 * 13 12 11 15 15 O 1.21693 * 119.99754 * 0.02764 * 14 13 12 16 16 N 1.34783 * 120.00297 * 180.02562 * 14 13 12 17 17 C 1.47067 * 136.05338 * 359.63200 * 16 14 13 18 18 C 1.53758 * 87.88515 * 152.95875 * 17 16 14 19 19 C 1.50701 * 114.26394 * 139.78944 * 18 17 16 20 20 H 1.08000 * 120.00165 * 266.47782 * 19 18 17 21 21 C 1.37878 * 119.99875 * 86.47950 * 19 18 17 22 22 N 1.31517 * 119.99761 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00052 * 359.97438 * 21 19 18 24 24 H 1.48492 * 109.47440 * 90.00148 * 23 21 19 25 25 H 1.48506 * 109.46979 * 210.00286 * 23 21 19 26 26 H 1.48499 * 109.46921 * 329.99575 * 23 21 19 27 27 C 1.47065 * 136.05927 * 180.02562 * 16 14 13 28 28 N 1.37888 * 107.61120 * 0.02562 * 13 12 11 29 29 H 0.97000 * 125.69571 * 179.88120 * 28 13 12 30 30 C 1.34912 * 108.60913 * 359.92799 * 28 13 12 31 31 C 1.47242 * 111.00353 * 66.03890 * 8 7 5 32 32 H 1.09001 * 109.47585 * 274.31768 * 1 2 3 33 33 H 1.09001 * 109.47086 * 34.31753 * 1 2 3 34 34 H 1.09004 * 109.47218 * 154.31298 * 1 2 3 35 35 H 1.08998 * 117.51050 * 145.03910 * 4 2 1 36 36 H 1.09000 * 117.50897 * 359.97438 * 4 2 1 37 37 H 1.09000 * 109.47547 * 123.74501 * 7 5 4 38 38 H 1.09007 * 109.47116 * 3.74897 * 7 5 4 39 39 H 1.09000 * 109.44939 * 284.01227 * 9 8 7 40 40 H 1.09005 * 109.45451 * 43.93452 * 9 8 7 41 41 H 1.09002 * 109.76672 * 289.51405 * 10 9 8 42 42 H 1.08999 * 109.80749 * 168.69017 * 10 9 8 43 43 H 1.08000 * 126.54272 * 0.23136 * 12 11 10 44 44 H 1.08997 * 113.46521 * 267.69337 * 17 16 14 45 45 H 1.09006 * 113.46860 * 38.13450 * 17 16 14 46 46 H 1.08997 * 114.39839 * 272.67455 * 18 17 16 47 47 H 0.97001 * 120.00106 * 180.02562 * 22 21 19 48 48 H 1.09002 * 113.46390 * 321.86736 * 27 16 14 49 49 H 1.08996 * 113.46747 * 92.24947 * 27 16 14 50 50 H 1.09009 * 109.69741 * 56.22293 * 31 8 7 51 51 H 1.09001 * 109.73957 * 295.63892 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2367 -1.1220 -0.7648 5 6 2.2363 -1.1210 0.7652 6 1 1.6111 -1.8582 1.2688 7 6 3.5488 -0.7759 1.4717 8 7 4.0107 -1.9384 2.2419 9 6 5.1229 -1.5734 3.1301 10 6 5.3168 -2.6679 4.1890 11 6 5.3558 -3.9977 3.4771 12 6 5.8024 -5.2237 3.9553 13 6 5.6412 -6.1375 2.9321 14 6 5.9848 -7.5626 2.9813 15 8 6.4598 -8.0393 3.9952 16 7 5.7742 -8.3442 1.9036 17 6 5.2348 -8.1563 0.5484 18 6 6.1091 -9.3382 0.0980 19 6 5.4363 -10.2703 -0.8764 20 1 4.9191 -11.1472 -0.5157 21 6 5.4809 -10.0037 -2.2284 22 7 4.8933 -10.8169 -3.0788 23 14 6.3748 -8.4867 -2.8522 24 1 7.7946 -8.8258 -3.1246 25 1 5.7304 -8.0119 -4.1031 26 1 6.3097 -7.4165 -1.8249 27 6 5.9764 -9.7617 1.5677 28 7 5.1049 -5.4660 1.8537 29 1 4.8871 -5.8586 0.9939 30 6 4.9347 -4.1716 2.1939 31 6 4.3752 -3.0516 1.3498 32 1 -0.3634 0.0774 1.0247 33 1 -0.3633 0.8488 -0.5794 34 1 -0.3634 -0.9261 -0.4455 35 1 3.1719 -0.8767 -1.2681 36 1 1.6116 -1.8600 -1.2674 37 1 3.3885 0.0659 2.1452 38 1 4.3016 -0.5093 0.7298 39 1 6.0362 -1.4695 2.5443 40 1 4.8986 -0.6273 3.6228 41 1 4.4854 -2.6506 4.8936 42 1 6.2548 -2.5059 4.7201 43 1 6.1995 -5.4241 4.9395 44 1 4.1655 -8.3549 0.4755 45 1 5.5196 -7.2065 0.0956 46 1 7.1211 -9.0624 -0.1983 47 1 4.9250 -10.6296 -4.0300 48 1 6.8932 -10.1797 1.9836 49 1 5.1029 -10.3832 1.7642 50 1 5.1286 -2.7187 0.6358 51 1 3.4912 -3.3999 0.8156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277142666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:51 Heat of formation + Delta-G solvation = 57.786793 kcal Electronic energy + Delta-G solvation = -29807.083992 eV Core-core repulsion = 25901.199087 eV Total energy + Delta-G solvation = -3905.884905 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.71580 -41.05069 -39.59027 -38.80424 -37.69166 -34.73947 -33.90102 -32.02855 -31.32857 -30.37033 -29.50327 -27.99947 -26.98577 -26.73181 -25.02156 -23.48079 -22.71292 -21.87895 -21.48160 -21.07074 -20.51896 -19.66974 -19.25167 -18.59471 -17.36523 -16.91844 -16.82363 -16.50744 -16.33450 -16.06766 -15.61522 -15.52000 -15.10244 -14.82818 -14.78877 -14.47115 -14.43014 -14.08922 -14.01634 -13.91581 -13.68634 -13.59013 -13.50252 -13.39414 -12.95645 -12.73442 -12.71490 -12.61240 -12.40698 -12.21348 -11.95460 -11.90425 -11.85326 -11.75359 -11.31435 -11.07439 -10.78597 -10.72676 -10.60142 -9.97218 -9.77862 -9.34864 -8.94056 -8.31733 -6.40175 0.34659 1.35490 1.39739 1.48141 1.60213 1.74589 1.94649 2.28625 2.33420 2.74256 2.97521 2.98616 3.42957 3.62300 3.77796 3.85793 3.96202 4.03624 4.07439 4.11449 4.16660 4.31607 4.31907 4.37032 4.40453 4.44231 4.47661 4.49210 4.54107 4.55288 4.65682 4.67970 4.70934 4.81137 4.91823 4.93877 4.97129 4.98454 4.99541 5.12430 5.16581 5.22493 5.24113 5.27539 5.33961 5.48936 5.53004 5.74414 5.86671 6.03093 6.15176 6.23553 6.35847 6.63947 6.69073 6.99473 7.27325 8.83628 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.003125 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.246938 B = 8958.075502 C =11395.173560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.144 4.144 3 H 0.112 0.888 4 C -0.186 4.186 5 C -0.148 4.148 6 H 0.099 0.901 7 C 0.093 3.907 8 N -0.539 5.539 9 C 0.057 3.943 10 C -0.038 4.038 11 C -0.176 4.176 12 C -0.105 4.105 13 C -0.073 4.073 14 C 0.605 3.395 15 O -0.583 6.583 16 N -0.648 5.648 17 C 0.091 3.909 18 C -0.007 4.007 19 C -0.514 4.514 20 H 0.044 0.956 21 C 0.023 3.977 22 N -0.940 5.940 23 Si 0.939 3.061 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.234 1.234 27 C 0.116 3.884 28 N -0.522 5.522 29 H 0.419 0.581 30 C 0.048 3.952 31 C 0.132 3.868 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.147 0.853 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.269 0.731 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.061 0.939 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.990 27.946 6.985 29.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.162 4.162 3 H 0.130 0.870 4 C -0.222 4.222 5 C -0.167 4.167 6 H 0.117 0.883 7 C -0.034 4.034 8 N -0.264 5.264 9 C -0.070 4.070 10 C -0.076 4.076 11 C -0.182 4.182 12 C -0.132 4.132 13 C -0.185 4.185 14 C 0.399 3.601 15 O -0.465 6.465 16 N -0.381 5.381 17 C -0.032 4.032 18 C -0.026 4.026 19 C -0.552 4.552 20 H 0.062 0.938 21 C -0.176 4.176 22 N -0.578 5.578 23 Si 0.763 3.237 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.157 1.157 27 C -0.006 4.006 28 N -0.120 5.120 29 H 0.260 0.740 30 C -0.072 4.072 31 C 0.003 3.997 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.121 0.879 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.165 0.835 44 H 0.111 0.889 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.100 0.900 50 H 0.078 0.922 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.160 27.515 7.658 28.863 hybrid contribution 0.733 -0.513 -1.528 1.771 sum -3.427 27.003 6.130 27.901 Atomic orbital electron populations 1.21382 0.92617 1.02049 1.02124 1.22445 0.95512 0.94609 1.03661 0.86958 1.23302 1.02894 1.01934 0.94119 1.22360 0.98782 1.02322 0.93239 0.88290 1.21710 0.93849 0.91782 0.96075 1.61785 1.36580 1.07211 1.20785 1.22225 0.91623 0.98867 0.94279 1.20191 1.02667 0.88064 0.96630 1.19546 1.07818 0.96387 0.94430 1.21064 1.02456 0.91505 0.98193 1.20200 1.15479 0.91771 0.91093 1.16938 0.77792 0.84459 0.80957 1.90752 1.48780 1.75288 1.31661 1.49833 1.62050 1.12550 1.13668 1.23890 1.00513 1.00433 0.78373 1.20684 0.96156 0.93634 0.92157 1.20880 1.34231 1.09163 0.90902 0.93783 1.25850 0.95402 0.99468 0.96899 1.70032 1.45117 1.39387 1.03292 0.85876 0.78703 0.80495 0.78650 1.20042 1.21091 1.15723 1.23052 1.01263 0.81983 0.94276 1.41953 1.48403 1.08096 1.13541 0.73963 1.20811 1.04347 0.84935 0.97124 1.20618 0.99349 0.87712 0.92008 0.91971 0.91407 0.93100 0.88603 0.89287 0.88632 0.93912 0.94359 0.87908 0.90216 0.89348 0.83533 0.88950 0.91058 0.91477 0.92197 0.91242 0.89980 0.92170 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 10.19 71.98 0.73 -0.60 16 2 C -0.14 -1.59 6.13 -10.77 -0.07 -1.66 16 3 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.19 -2.34 9.83 30.62 0.30 -2.04 16 5 C -0.15 -1.91 4.60 -10.79 -0.05 -1.96 16 6 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 7 C 0.09 1.09 5.24 86.30 0.45 1.54 16 8 N -0.54 -8.40 4.61 -898.10 -4.14 -12.54 16 9 C 0.06 0.79 5.53 86.47 0.48 1.26 16 10 C -0.04 -0.65 6.51 30.08 0.20 -0.45 16 11 C -0.18 -4.36 5.98 -20.11 -0.12 -4.48 16 12 C -0.11 -3.18 10.63 22.42 0.24 -2.94 16 13 C -0.07 -2.45 7.03 40.37 0.28 -2.17 16 14 C 0.61 24.08 8.04 86.45 0.69 24.77 16 15 O -0.58 -26.60 17.66 -4.33 -0.08 -26.67 16 16 N -0.65 -24.90 3.69 -862.48 -3.18 -28.08 16 17 C 0.09 3.27 6.35 83.27 0.53 3.80 16 18 C -0.01 -0.28 2.97 -11.11 -0.03 -0.31 16 19 C -0.51 -26.29 9.38 25.60 0.24 -26.05 16 20 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 21 C 0.02 1.20 5.47 84.65 0.46 1.67 16 22 N -0.94 -54.18 13.96 21.45 0.30 -53.88 16 23 Si 0.94 38.99 27.15 68.60 1.86 40.85 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 25 H -0.29 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.23 -8.41 5.72 99.48 0.57 -7.84 16 27 C 0.12 4.61 8.17 83.19 0.68 5.29 16 28 N -0.52 -14.64 5.90 -171.20 -1.01 -15.65 16 29 H 0.42 10.92 5.85 -92.71 -0.54 10.38 16 30 C 0.05 1.17 7.13 41.70 0.30 1.46 16 31 C 0.13 2.40 5.55 85.58 0.47 2.87 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 0.60 7.90 -2.38 -0.02 0.58 16 35 H 0.10 1.13 8.03 -2.39 -0.02 1.11 16 36 H 0.09 1.22 8.05 -2.39 -0.02 1.20 16 37 H 0.10 0.89 7.84 -2.39 -0.02 0.87 16 38 H 0.04 0.47 7.83 -2.38 -0.02 0.45 16 39 H 0.04 0.54 8.07 -2.39 -0.02 0.52 16 40 H 0.10 0.94 7.80 -2.38 -0.02 0.92 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.15 4.28 8.06 -2.91 -0.02 4.25 16 44 H 0.09 3.30 8.10 -2.39 -0.02 3.28 16 45 H 0.07 2.28 5.38 -2.38 -0.01 2.26 16 46 H 0.07 2.77 7.03 -2.39 -0.02 2.76 16 47 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 48 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 49 H 0.08 3.24 8.10 -2.39 -0.02 3.22 16 50 H 0.06 1.01 8.11 -2.38 -0.02 0.99 16 51 H 0.09 1.67 7.45 -2.39 -0.02 1.65 16 Total: -1.00 -65.68 404.59 -0.20 -65.88 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.25 Total: 30.09 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 5.79 Total: 0.00 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -8.03 Total: -110.15 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.08 Total: -26.67 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.86 Total: 40.85 kcal Total: -65.68 -0.20 -65.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277142666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.663 kcal (2) G-P(sol) polarization free energy of solvation -65.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds