Wall clock time and date at job start Wed Apr 1 2020 03:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 115.55789 * 2 1 4 4 C 1.52997 * 117.50357 * 214.30662 * 2 1 3 5 5 C 1.52998 * 117.49807 * 145.68027 * 2 1 3 6 6 H 1.08997 * 117.50192 * 215.00003 * 5 2 1 7 7 C 1.53002 * 117.49852 * 0.02562 * 5 2 1 8 8 N 1.46900 * 109.46971 * 184.99543 * 7 5 2 9 9 C 1.46940 * 110.99976 * 190.64355 * 8 7 5 10 10 C 1.53454 * 109.65384 * 164.03738 * 9 8 7 11 11 C 1.50886 * 107.86514 * 48.94698 * 10 9 8 12 12 C 1.38975 * 128.57999 * 164.27550 * 11 10 9 13 13 C 1.38127 * 106.93181 * 180.35655 * 12 11 10 14 14 C 1.46687 * 126.19467 * 179.97438 * 13 12 11 15 15 O 1.21697 * 119.99652 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00006 * 180.02562 * 14 13 12 17 17 C 1.47069 * 136.05857 * 359.63204 * 16 14 13 18 18 C 1.53757 * 87.88774 * 152.96067 * 17 16 14 19 19 C 1.50693 * 114.08723 * 139.77809 * 18 17 16 20 20 H 1.07997 * 120.00359 * 266.56513 * 19 18 17 21 21 C 1.37881 * 119.99828 * 86.56469 * 19 18 17 22 22 N 1.31519 * 119.99974 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 119.99855 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47149 * 90.00613 * 23 21 19 25 25 H 1.48503 * 109.47214 * 210.00046 * 23 21 19 26 26 H 1.48497 * 109.47315 * 330.00232 * 23 21 19 27 27 C 1.47067 * 136.05362 * 179.97438 * 16 14 13 28 28 N 1.37876 * 107.61365 * 0.02562 * 13 12 11 29 29 H 0.97008 * 125.69572 * 179.97438 * 28 13 12 30 30 C 1.34907 * 108.61877 * 359.90617 * 28 13 12 31 31 C 1.47252 * 111.00097 * 66.04291 * 8 7 5 32 32 H 1.08997 * 109.46844 * 274.31249 * 1 2 3 33 33 H 1.08997 * 109.46834 * 34.31639 * 1 2 3 34 34 H 1.08995 * 109.46780 * 154.31301 * 1 2 3 35 35 H 1.08994 * 117.50185 * 145.01647 * 4 2 1 36 36 H 1.09007 * 117.49406 * 0.02562 * 4 2 1 37 37 H 1.08998 * 109.47377 * 64.99745 * 7 5 2 38 38 H 1.08999 * 109.47134 * 304.99118 * 7 5 2 39 39 H 1.08998 * 109.45161 * 283.99440 * 9 8 7 40 40 H 1.08998 * 109.45221 * 43.95785 * 9 8 7 41 41 H 1.09000 * 109.73326 * 289.37401 * 10 9 8 42 42 H 1.09001 * 109.80992 * 168.56238 * 10 9 8 43 43 H 1.08000 * 126.52783 * 0.35097 * 12 11 10 44 44 H 1.08998 * 113.46629 * 267.69594 * 17 16 14 45 45 H 1.08999 * 113.46412 * 38.13288 * 17 16 14 46 46 H 1.09003 * 114.57526 * 272.66926 * 18 17 16 47 47 H 0.96995 * 120.00090 * 179.97438 * 22 21 19 48 48 H 1.08995 * 113.47122 * 321.86861 * 27 16 14 49 49 H 1.09001 * 113.46289 * 92.25361 * 27 16 14 50 50 H 1.09000 * 109.70181 * 56.20408 * 31 8 7 51 51 H 1.09005 * 109.69849 * 295.60146 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2366 -1.1210 -0.7649 5 6 2.2365 -1.1209 0.7652 6 1 3.1713 -0.8749 1.2687 7 6 1.3588 -2.1563 1.4713 8 7 2.2081 -3.0732 2.2433 9 6 1.4349 -4.2248 2.7282 10 6 2.3920 -5.3391 3.1719 11 6 3.4327 -4.7233 4.0743 12 6 4.3124 -5.3587 4.9425 13 6 5.0601 -4.3702 5.5523 14 6 6.1169 -4.5740 6.5490 15 8 6.4042 -5.7002 6.9096 16 7 6.7696 -3.5139 7.0654 17 6 6.7233 -2.0543 6.8914 18 6 7.2485 -1.9232 8.3305 19 6 8.2735 -0.8339 8.5143 20 1 9.3259 -1.0649 8.4414 21 6 7.8676 0.4576 8.7756 22 7 8.7621 1.4084 8.9355 23 14 6.0472 0.8572 8.9009 24 1 5.6010 0.6967 10.3081 25 1 5.8168 2.2581 8.4654 26 1 5.2767 -0.0653 8.0289 27 6 7.8457 -3.3082 8.0464 28 7 4.6326 -3.1573 5.0553 29 1 4.9818 -2.2878 5.3066 30 6 3.6485 -3.3813 4.1602 31 6 2.8768 -2.3678 3.3495 32 1 -0.3633 0.0773 1.0247 33 1 -0.3633 0.8488 -0.5794 34 1 -0.3633 -0.9261 -0.4454 35 1 3.1716 -0.8752 -1.2682 36 1 1.6113 -1.8583 -1.2685 37 1 0.7950 -2.7214 0.7291 38 1 0.6673 -1.6485 2.1437 39 1 0.8197 -3.9187 3.5743 40 1 0.7936 -4.5943 1.9279 41 1 2.8742 -5.7793 2.2991 42 1 1.8396 -6.1059 3.7152 43 1 4.3955 -6.4226 5.1087 44 1 7.4204 -1.6845 6.1395 45 1 5.7139 -1.6648 6.7589 46 1 6.4737 -1.9197 9.0973 47 1 8.4766 2.3171 9.1189 48 1 7.7926 -3.9867 8.8978 49 1 8.8391 -3.2701 7.5994 50 1 2.1314 -1.8840 3.9807 51 1 3.5607 -1.6199 2.9483 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277142667.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:56 Heat of formation + Delta-G solvation = 76.853881 kcal Electronic energy + Delta-G solvation = -29808.439463 eV Core-core repulsion = 25903.381369 eV Total energy + Delta-G solvation = -3905.058094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.58085 -39.58711 -38.94447 -37.31919 -36.90030 -33.03845 -32.72127 -30.73199 -29.97931 -29.29468 -28.82307 -26.94593 -25.67967 -25.31519 -24.15696 -22.52098 -21.75151 -21.44226 -20.08036 -19.63603 -19.09766 -18.66822 -17.51059 -17.16273 -16.52485 -15.99360 -15.52865 -15.29375 -15.23134 -15.07020 -14.64064 -14.12361 -14.06287 -13.76564 -13.63591 -13.40264 -13.21807 -13.11819 -12.99754 -12.91396 -12.73454 -12.48060 -12.26045 -11.99658 -11.96400 -11.91140 -11.72544 -11.65714 -11.20276 -10.99779 -10.98033 -10.81714 -10.23799 -10.22616 -10.10776 -10.02670 -9.52737 -9.31398 -8.80926 -8.77884 -8.59410 -8.26063 -7.79606 -6.31489 -4.34764 1.63435 2.70841 2.95514 3.09366 3.17124 3.20141 3.30971 3.37101 3.67240 3.72919 4.19098 4.28103 4.48616 4.54804 4.55835 4.76533 4.85187 4.91747 4.92382 4.95515 5.01971 5.12040 5.14166 5.21064 5.28320 5.35816 5.39920 5.44090 5.47131 5.51048 5.54004 5.58035 5.66362 5.76200 5.80152 5.89730 5.92405 5.94894 5.98452 6.01201 6.09497 6.18185 6.20939 6.27651 6.41850 6.64758 6.76233 6.91873 7.00989 7.08106 7.42418 7.45441 8.17329 8.27095 8.54167 8.73026 9.28840 10.80427 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009606 B = 0.002988 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.105531 B = 9369.885087 C =11638.303810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.157 4.157 3 H 0.103 0.897 4 C -0.168 4.168 5 C -0.146 4.146 6 H 0.108 0.892 7 C 0.091 3.909 8 N -0.529 5.529 9 C 0.057 3.943 10 C -0.039 4.039 11 C -0.168 4.168 12 C -0.105 4.105 13 C -0.037 4.037 14 C 0.607 3.393 15 O -0.547 6.547 16 N -0.647 5.647 17 C 0.077 3.923 18 C -0.002 4.002 19 C -0.514 4.514 20 H 0.082 0.918 21 C 0.078 3.922 22 N -0.888 5.888 23 Si 0.877 3.123 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.266 1.266 27 C 0.117 3.883 28 N -0.523 5.523 29 H 0.417 0.583 30 C 0.036 3.964 31 C 0.126 3.874 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.040 0.960 39 H 0.038 0.962 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.268 0.732 48 H 0.065 0.935 49 H 0.083 0.917 50 H 0.051 0.949 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.174 -4.713 -17.391 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.175 4.175 3 H 0.121 0.879 4 C -0.205 4.205 5 C -0.165 4.165 6 H 0.126 0.874 7 C -0.037 4.037 8 N -0.254 5.254 9 C -0.071 4.071 10 C -0.077 4.077 11 C -0.174 4.174 12 C -0.132 4.132 13 C -0.150 4.150 14 C 0.398 3.602 15 O -0.426 6.426 16 N -0.381 5.381 17 C -0.046 4.046 18 C -0.022 4.022 19 C -0.552 4.552 20 H 0.100 0.900 21 C -0.126 4.126 22 N -0.525 5.525 23 Si 0.704 3.296 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.190 1.190 27 C -0.005 4.005 28 N -0.121 5.121 29 H 0.258 0.742 30 C -0.083 4.083 31 C -0.002 4.002 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.164 0.836 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.101 0.899 50 H 0.069 0.931 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.644 -5.321 -17.472 25.394 hybrid contribution -1.196 1.264 0.659 1.861 sum -18.840 -4.057 -16.813 25.575 Atomic orbital electron populations 1.21343 0.92962 1.01919 1.01781 1.22414 0.95365 0.94613 1.05149 0.87860 1.23120 1.02384 1.01069 0.93970 1.22366 1.01136 0.98752 0.94237 0.87446 1.21652 0.93163 0.92576 0.96305 1.61760 1.31853 1.08745 1.23035 1.22167 0.94825 0.91226 0.98878 1.20072 0.94043 0.96095 0.97448 1.19128 1.02936 0.91814 1.03538 1.20834 0.96286 0.98383 0.97674 1.20536 1.04232 0.84831 1.05439 1.16579 0.80610 0.83399 0.79640 1.90788 1.67752 1.22395 1.61706 1.49880 1.37762 1.07095 1.43382 1.24113 0.99555 0.77181 1.03788 1.20776 0.96831 0.93458 0.91092 1.20765 0.93688 0.90942 1.49784 0.90013 1.25018 0.97490 0.96266 0.93865 1.69886 1.33733 1.01714 1.47133 0.86889 0.85719 0.77805 0.79230 1.19963 1.21130 1.19037 1.23111 0.90601 0.96894 0.89868 1.42002 1.28804 1.08835 1.32466 0.74239 1.20188 0.95251 0.95975 0.96923 1.20592 0.96332 0.93132 0.90147 0.92272 0.92206 0.92521 0.88912 0.88786 0.90251 0.94220 0.94406 0.90387 0.90526 0.90705 0.83608 0.89270 0.93241 0.91968 0.92238 0.91623 0.89898 0.93105 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.19 37.16 0.34 -0.37 16 2 C -0.16 -1.08 6.41 -90.62 -0.58 -1.66 16 3 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 4 C -0.17 -1.20 9.82 -26.73 -0.26 -1.47 16 5 C -0.15 -1.15 5.70 -90.62 -0.52 -1.66 16 6 H 0.11 0.94 6.44 -51.93 -0.33 0.61 16 7 C 0.09 0.70 4.32 -3.82 -0.02 0.68 16 8 N -0.53 -5.05 4.61 -235.26 -1.08 -6.14 16 9 C 0.06 0.50 5.53 -3.57 -0.02 0.48 16 10 C -0.04 -0.39 6.51 -27.56 -0.18 -0.57 16 11 C -0.17 -2.27 5.98 -104.99 -0.63 -2.90 16 12 C -0.11 -1.65 10.63 -39.35 -0.42 -2.07 16 13 C -0.04 -0.64 7.03 -81.78 -0.57 -1.21 16 14 C 0.61 12.13 8.04 -12.85 -0.10 12.03 16 15 O -0.55 -12.35 17.66 5.19 0.09 -12.25 16 16 N -0.65 -12.62 3.69 -186.60 -0.69 -13.31 16 17 C 0.08 1.44 6.34 -8.36 -0.05 1.39 16 18 C 0.00 -0.04 2.97 -91.13 -0.27 -0.31 16 19 C -0.51 -12.90 9.37 -34.44 -0.32 -13.23 16 20 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 21 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 22 N -0.89 -24.98 13.96 55.43 0.77 -24.20 16 23 Si 0.88 19.32 27.15 -169.99 -4.61 14.70 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.27 -5.39 5.72 56.52 0.32 -5.07 16 27 C 0.12 2.31 8.17 -8.50 -0.07 2.24 16 28 N -0.52 -7.82 5.90 -5.46 -0.03 -7.86 16 29 H 0.42 5.88 5.86 -40.82 -0.24 5.64 16 30 C 0.04 0.48 7.13 -81.84 -0.58 -0.11 16 31 C 0.13 1.34 5.55 -4.64 -0.03 1.31 16 32 H 0.06 0.34 7.83 -51.93 -0.41 -0.06 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.62 7.94 -51.92 -0.41 0.21 16 37 H 0.08 0.55 7.58 -51.93 -0.39 0.15 16 38 H 0.04 0.30 7.72 -51.93 -0.40 -0.10 16 39 H 0.04 0.34 8.07 -51.93 -0.42 -0.08 16 40 H 0.08 0.54 7.80 -51.93 -0.40 0.13 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 44 H 0.09 1.64 8.10 -51.93 -0.42 1.22 16 45 H 0.05 0.86 5.40 -51.93 -0.28 0.58 16 46 H 0.06 1.33 7.03 -51.93 -0.37 0.97 16 47 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 50 H 0.05 0.51 8.11 -51.93 -0.42 0.09 16 51 H 0.09 0.89 6.50 -51.93 -0.34 0.55 16 LS Contribution 400.70 15.07 6.04 6.04 Total: -1.00 -29.99 400.70 -12.16 -42.15 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -8.26 Total: 6.39 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -4.38 Total: -5.52 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -1.03 Total: -51.50 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.61 Total: 14.70 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.99 -12.16 -42.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277142667.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.001 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds