Wall clock time and date at job start Wed Apr 1 2020 02:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47012 * 2 1 4 4 F 1.39899 * 109.46640 * 240.00327 * 2 1 3 5 5 C 1.50692 * 109.47202 * 120.00453 * 2 1 3 6 6 O 1.21283 * 120.00652 * 359.97438 * 5 2 1 7 7 N 1.34784 * 119.99994 * 179.97438 * 5 2 1 8 8 C 1.46498 * 120.00226 * 179.97438 * 7 5 2 9 9 C 1.52995 * 109.47204 * 184.73869 * 8 7 5 10 10 H 1.09002 * 109.69394 * 58.95683 * 9 8 7 11 11 C 1.53975 * 109.69909 * 298.40341 * 9 8 7 12 12 C 1.45875 * 112.67183 * 158.88335 * 11 9 8 13 13 C 1.54523 * 111.60909 * 61.53436 * 12 11 9 14 14 C 1.50590 * 108.83707 * 282.66917 * 13 12 11 15 15 C 1.53917 * 112.87860 * 91.84303 * 14 13 12 16 16 N 1.44307 * 109.69630 * 179.54482 * 9 8 7 17 17 C 1.46899 * 110.99971 * 341.06337 * 16 9 8 18 18 C 1.50710 * 109.46771 * 295.58259 * 17 16 9 19 19 O 1.21294 * 120.00073 * 0.03749 * 18 17 16 20 20 N 1.34777 * 119.99964 * 180.02562 * 18 17 16 21 21 C 1.37093 * 120.00166 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99989 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00197 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99544 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 119.99801 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47128 * 89.99771 * 25 23 21 27 27 H 1.48501 * 109.46798 * 210.00037 * 25 23 21 28 28 H 1.48496 * 109.47091 * 329.99850 * 25 23 21 29 29 H 1.09004 * 109.46475 * 299.99726 * 1 2 3 30 30 H 1.08993 * 109.47723 * 59.99450 * 1 2 3 31 31 H 1.09001 * 109.47502 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46644 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47305 * 300.00291 * 3 2 1 34 34 H 1.08994 * 109.47218 * 60.00795 * 3 2 1 35 35 H 0.96997 * 119.99771 * 0.02562 * 7 5 2 36 36 H 1.09006 * 109.46785 * 64.74232 * 8 7 5 37 37 H 1.08996 * 109.47368 * 304.74382 * 8 7 5 38 38 H 1.09003 * 108.84220 * 38.05724 * 11 9 8 39 39 H 1.09008 * 108.84494 * 279.70775 * 11 9 8 40 40 H 1.09001 * 109.04381 * 182.05819 * 12 11 9 41 41 H 1.09000 * 109.04273 * 301.00466 * 12 11 9 42 42 H 1.09002 * 109.57488 * 42.54986 * 13 12 11 43 43 H 1.08999 * 109.57489 * 162.91989 * 13 12 11 44 44 H 1.09004 * 108.82589 * 330.96300 * 14 13 12 45 45 H 1.09005 * 108.72617 * 212.65389 * 14 13 12 46 46 H 1.08994 * 108.71518 * 196.75384 * 15 14 13 47 47 H 1.08994 * 108.61125 * 78.66674 * 15 14 13 48 48 H 1.08994 * 109.47571 * 55.58170 * 17 16 9 49 49 H 1.09002 * 109.47330 * 175.58675 * 17 16 9 50 50 H 0.97001 * 119.99629 * 0.02562 * 20 18 17 51 51 H 0.97006 * 119.99741 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9962 -0.6594 -1.1423 5 6 2.0323 -0.7105 1.2303 6 8 1.2443 -1.1711 2.0290 7 7 3.3575 -0.8341 1.4433 8 6 3.8459 -1.5243 2.6397 9 6 5.3713 -1.4225 2.7002 10 1 5.6689 -0.3741 2.7225 11 6 5.9866 -2.1105 1.4678 12 6 7.3431 -1.6530 1.1872 13 6 8.3028 -1.9666 2.3569 14 6 8.0724 -0.9644 3.4570 15 6 7.0367 -1.4393 4.4918 16 7 5.8568 -2.0918 3.8829 17 6 4.7821 -2.2631 4.8695 18 6 4.3177 -0.9108 5.3462 19 8 4.8310 0.0964 4.9066 20 7 3.3318 -0.8207 6.2607 21 6 2.9097 0.4093 6.6947 22 1 3.3669 1.3061 6.3035 23 6 1.8936 0.5021 7.6380 24 7 1.4887 1.6812 8.0535 25 14 1.1033 -1.0490 8.3152 26 1 1.8444 -1.4958 9.5220 27 1 -0.3090 -0.7673 8.6776 28 1 1.1463 -2.1170 7.2844 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.9878 -0.4654 0.8049 36 1 3.5531 -2.5735 2.5988 37 1 3.4153 -1.0613 3.5275 38 1 5.3593 -1.9055 0.6003 39 1 6.0064 -3.1869 1.6387 40 1 7.7063 -2.1482 0.2867 41 1 7.3275 -0.5762 1.0189 42 1 8.1073 -2.9719 2.7303 43 1 9.3343 -1.8978 2.0114 44 1 7.7245 -0.0307 3.0150 45 1 9.0184 -0.7800 3.9662 46 1 6.7006 -0.5789 5.0704 47 1 7.5183 -2.1469 5.1665 48 1 3.9476 -2.7925 4.4098 49 1 5.1550 -2.8386 5.7168 50 1 2.9214 -1.6263 6.6124 51 1 0.7796 1.7461 8.7123 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282655847.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:59 Heat of formation + Delta-G solvation = -108.866936 kcal Electronic energy + Delta-G solvation = -32935.011421 eV Core-core repulsion = 28591.130643 eV Total energy + Delta-G solvation = -4343.880778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -47.99985 -40.49580 -39.27672 -37.79555 -35.10354 -34.56206 -33.77654 -33.61882 -32.01526 -31.73224 -28.43385 -27.79792 -27.26587 -25.28012 -24.25400 -23.47585 -22.25316 -20.38638 -20.18798 -19.76526 -19.17331 -18.29504 -17.64716 -16.75890 -16.21421 -16.05633 -15.62461 -15.56155 -14.98067 -14.94565 -14.83397 -14.47614 -14.09735 -13.95280 -13.66541 -13.47125 -13.20379 -13.14534 -12.98915 -12.70504 -12.56951 -12.48278 -12.43097 -12.21891 -12.13020 -12.10793 -12.01544 -11.41899 -11.34777 -11.12437 -10.99502 -10.68688 -10.59727 -10.56931 -10.52164 -10.28954 -10.25841 -10.03428 -9.72395 -9.57326 -9.17067 -8.92667 -8.22674 -7.58442 -6.36536 -3.87230 2.53277 3.01885 3.03425 3.06703 3.14915 3.61251 4.07837 4.10462 4.26550 4.32394 4.56794 4.59449 4.69202 4.79910 4.82448 4.98062 5.13721 5.17717 5.32176 5.34295 5.40031 5.41915 5.52037 5.53625 5.63487 5.70047 5.76748 5.78760 5.84945 5.88336 5.88941 5.93024 6.01026 6.02038 6.06537 6.17086 6.20070 6.24265 6.35713 6.43218 6.47889 6.52057 6.63136 7.20947 7.43605 7.48237 7.51328 8.07800 8.16805 8.51469 8.88279 9.36612 9.72865 10.76093 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.007292 B = 0.005248 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3838.822106 B = 5333.681952 C = 8302.681543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.103 3.897 3 C -0.174 4.174 4 F -0.198 7.198 5 C 0.497 3.503 6 O -0.516 6.516 7 N -0.711 5.711 8 C 0.106 3.894 9 C 0.090 3.910 10 H 0.073 0.927 11 C -0.113 4.113 12 C -0.114 4.114 13 C -0.111 4.111 14 C -0.116 4.116 15 C 0.047 3.953 16 N -0.509 5.509 17 C 0.027 3.973 18 C 0.413 3.587 19 O -0.578 6.578 20 N -0.580 5.580 21 C -0.305 4.305 22 H 0.118 0.882 23 C 0.045 3.955 24 N -0.877 5.877 25 Si 0.877 3.123 26 H -0.270 1.270 27 H -0.275 1.275 28 H -0.267 1.267 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.399 0.601 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.095 0.905 49 H 0.091 0.909 50 H 0.372 0.628 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.609 -7.106 -15.350 18.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.082 3.918 3 C -0.232 4.232 4 F -0.178 7.178 5 C 0.280 3.720 6 O -0.391 6.391 7 N -0.363 5.363 8 C -0.017 4.017 9 C -0.020 4.020 10 H 0.091 0.909 11 C -0.152 4.152 12 C -0.151 4.151 13 C -0.148 4.148 14 C -0.154 4.154 15 C -0.080 4.080 16 N -0.233 5.233 17 C -0.105 4.105 18 C 0.200 3.800 19 O -0.464 6.464 20 N -0.218 5.218 21 C -0.434 4.434 22 H 0.136 0.864 23 C -0.159 4.159 24 N -0.517 5.517 25 Si 0.703 3.297 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.192 1.192 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.234 0.766 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.113 0.887 49 H 0.109 0.891 50 H 0.204 0.796 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.413 -7.103 -15.072 17.853 hybrid contribution -0.692 -0.146 0.631 0.948 sum 5.720 -7.248 -14.440 17.140 Atomic orbital electron populations 1.22163 0.90891 1.04567 1.03927 1.21207 0.96978 0.92961 0.80659 1.22414 1.02709 0.93169 1.04862 1.92896 1.90327 1.82800 1.51809 1.20714 0.82968 0.80561 0.87781 1.90765 1.55101 1.46972 1.46261 1.45920 1.06629 1.58228 1.25490 1.22119 0.94331 0.96921 0.88364 1.21346 0.91658 0.98312 0.90671 0.90863 1.20611 0.96132 1.01806 0.96606 1.20554 0.95664 1.00875 0.98047 1.21332 0.97878 1.00390 0.95250 1.21344 0.98251 0.98995 0.96827 1.22575 0.89803 0.99186 0.96468 1.61357 1.05708 1.51096 1.05090 1.22317 0.95601 0.95948 0.96609 1.20830 0.83827 0.91628 0.83736 1.90524 1.58397 1.37577 1.59859 1.42385 1.33141 1.08379 1.37866 1.19408 1.17525 0.85186 1.21316 0.86398 1.25056 0.96855 0.97034 0.96961 1.69621 1.28763 1.22614 1.30665 0.86691 0.80160 0.82973 0.79829 1.19552 1.20052 1.19213 0.89647 0.90816 0.90691 0.90916 0.90135 0.89548 0.76600 0.91488 0.88847 0.92610 0.91082 0.92557 0.92647 0.90957 0.92831 0.92254 0.92017 0.90840 0.91981 0.88663 0.89115 0.79558 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 8.22 37.16 0.31 -1.51 16 2 C 0.10 1.29 1.54 -91.78 -0.14 1.15 16 3 C -0.17 -1.79 8.82 37.16 0.33 -1.46 16 4 F -0.20 -2.47 16.79 2.25 0.04 -2.43 16 5 C 0.50 7.94 6.87 -10.99 -0.08 7.86 16 6 O -0.52 -10.28 15.98 5.56 0.09 -10.19 16 7 N -0.71 -10.34 5.00 -60.30 -0.30 -10.64 16 8 C 0.11 1.72 3.62 -4.05 -0.01 1.70 16 9 C 0.09 1.31 1.15 -68.59 -0.08 1.23 16 10 H 0.07 1.24 6.07 -51.93 -0.32 0.92 16 11 C -0.11 -1.31 4.71 -29.59 -0.14 -1.45 16 12 C -0.11 -1.19 5.35 -29.30 -0.16 -1.35 16 13 C -0.11 -1.19 5.63 -27.14 -0.15 -1.34 16 14 C -0.12 -1.45 5.28 -27.46 -0.14 -1.60 16 15 C 0.05 0.69 5.10 -2.77 -0.01 0.68 16 16 N -0.51 -7.56 4.17 -227.98 -0.95 -8.51 16 17 C 0.03 0.44 5.33 -4.97 -0.03 0.41 16 18 C 0.41 8.86 4.97 -10.98 -0.05 8.81 16 19 O -0.58 -13.98 11.79 5.54 0.07 -13.92 16 20 N -0.58 -13.63 5.09 -10.96 -0.06 -13.68 16 21 C -0.31 -8.53 10.16 -14.93 -0.15 -8.69 16 22 H 0.12 3.76 7.39 -52.48 -0.39 3.37 16 23 C 0.04 1.23 5.50 -17.47 -0.10 1.13 16 24 N -0.88 -25.57 13.96 55.50 0.77 -24.79 16 25 Si 0.88 19.69 27.74 -169.99 -4.71 14.98 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.27 -5.58 6.52 56.52 0.37 -5.21 16 29 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.07 0.69 7.57 -51.93 -0.39 0.30 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 4.78 6.83 -40.82 -0.28 4.50 16 36 H 0.07 1.06 7.30 -51.93 -0.38 0.68 16 37 H 0.09 1.90 4.61 -51.93 -0.24 1.66 16 38 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 39 H 0.07 0.85 8.08 -51.92 -0.42 0.43 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.59 7.59 -51.93 -0.39 0.19 16 42 H 0.07 0.82 7.78 -51.93 -0.40 0.41 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.81 6.66 -51.93 -0.35 0.46 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.37 5.45 -51.93 -0.28 1.09 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.10 1.46 5.99 -51.93 -0.31 1.15 16 49 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 50 H 0.37 7.88 5.76 -40.82 -0.24 7.65 16 51 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 386.77 15.07 5.83 5.83 Total: -1.00 -32.34 386.77 -7.96 -40.30 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -8.12 Total: 17.49 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -0.61 Total: 5.57 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: -0.53 Total: -57.63 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.15 Total: -24.10 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.71 Total: 14.98 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.34 -7.96 -40.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282655847.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.569 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds