Wall clock time and date at job start Wed Apr 1 2020 03:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46294 * 2 1 4 4 C 1.53038 * 109.46016 * 240.01823 * 2 1 3 5 5 C 1.53190 * 109.31348 * 178.61287 * 4 2 1 6 6 N 1.46932 * 108.77457 * 54.64168 * 5 4 2 7 7 C 1.34779 * 120.63390 * 126.40724 * 6 5 4 8 8 O 1.21278 * 119.99837 * 185.99874 * 7 6 5 9 9 C 1.50702 * 119.99574 * 6.00493 * 7 6 5 10 10 H 1.09007 * 110.72902 * 303.39684 * 9 7 6 11 11 C 1.54367 * 110.81899 * 180.02562 * 9 7 6 12 12 C 1.51229 * 105.11508 * 268.06193 * 11 9 7 13 13 C 1.38744 * 130.69477 * 162.86450 * 12 11 9 14 14 C 1.38571 * 118.55832 * 180.02562 * 13 12 11 15 15 C 1.38223 * 118.99176 * 0.02562 * 14 13 12 16 16 N 1.31693 * 120.80077 * 359.97438 * 15 14 13 17 17 C 1.32298 * 122.03041 * 359.97438 * 16 15 14 18 18 C 1.51475 * 130.14203 * 180.02562 * 17 16 15 19 19 C 1.46922 * 118.73744 * 306.39122 * 6 5 4 20 20 H 1.09004 * 109.58630 * 293.82373 * 19 6 5 21 21 C 1.52999 * 109.58975 * 173.53294 * 19 6 5 22 22 N 1.46507 * 109.46636 * 69.47322 * 21 19 6 23 23 C 1.36936 * 120.00255 * 174.76115 * 22 21 19 24 24 H 1.08001 * 119.99277 * 359.97438 * 23 22 21 25 25 C 1.38807 * 120.00352 * 179.97438 * 23 22 21 26 26 N 1.31624 * 119.99934 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00250 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.46920 * 90.00076 * 27 25 23 29 29 H 1.48496 * 109.47539 * 210.00710 * 27 25 23 30 30 H 1.48506 * 109.46997 * 330.00976 * 27 25 23 31 31 C 1.53043 * 109.45713 * 119.95559 * 2 1 3 32 32 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46901 * 299.97824 * 1 2 3 34 34 H 1.08997 * 109.46760 * 59.97432 * 1 2 3 35 35 H 1.09001 * 109.49075 * 58.66946 * 4 2 1 36 36 H 1.08999 * 109.52904 * 298.58806 * 4 2 1 37 37 H 1.08996 * 109.58811 * 294.85492 * 5 4 2 38 38 H 1.08995 * 109.58848 * 174.42198 * 5 4 2 39 39 H 1.08996 * 110.31838 * 26.97249 * 11 9 7 40 40 H 1.09000 * 110.31303 * 149.15431 * 11 9 7 41 41 H 1.08001 * 120.71611 * 0.03239 * 13 12 11 42 42 H 1.07998 * 120.50275 * 180.02562 * 14 13 12 43 43 H 1.08001 * 119.59957 * 179.97438 * 15 14 13 44 44 H 1.09003 * 110.29399 * 78.25186 * 18 17 16 45 45 H 1.08997 * 110.29459 * 316.12419 * 18 17 16 46 46 H 1.08998 * 109.47625 * 189.46352 * 21 19 6 47 47 H 1.08999 * 109.47574 * 309.47392 * 21 19 6 48 48 H 0.97005 * 119.99968 * 354.75010 * 22 21 19 49 49 H 0.96997 * 119.99779 * 179.97438 * 26 25 23 50 50 H 1.09003 * 109.49956 * 61.43431 * 31 2 1 51 51 H 1.08997 * 109.50139 * 301.33267 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2499 5 6 3.5714 -0.6889 -1.2641 6 7 4.0679 -1.2489 0.0003 7 6 4.9620 -2.2574 0.0006 8 8 5.2820 -2.7838 1.0452 9 6 5.5642 -2.7307 -1.2973 10 1 4.7846 -3.0304 -1.9978 11 6 6.5554 -3.8885 -1.0523 12 6 7.9038 -3.2245 -0.8852 13 6 9.0879 -3.7048 -0.3447 14 6 10.1912 -2.8667 -0.3165 15 6 10.0735 -1.5869 -0.8252 16 7 8.9332 -1.1644 -1.3308 17 6 7.8581 -1.9340 -1.3768 18 6 6.4707 -1.6427 -1.9105 19 6 3.5714 -0.6885 1.2644 20 1 3.9143 0.3411 1.3673 21 6 4.0939 -1.5227 2.4357 22 7 5.5384 -1.3203 2.5732 23 6 6.2117 -1.8832 3.6243 24 1 5.6778 -2.4761 4.3522 25 6 7.5804 -1.6919 3.7543 26 7 8.2310 -0.9689 2.8675 27 14 8.4987 -2.4593 5.1886 28 1 8.9754 -3.8122 4.8042 29 1 9.6617 -1.6073 5.5446 30 1 7.5890 -2.5687 6.3573 31 6 2.0398 -0.7205 1.2503 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5135 0.8902 34 1 -0.3633 0.5142 -0.8897 35 1 1.6572 -0.2211 -2.1397 36 1 1.6978 -1.7559 -1.2385 37 1 3.9143 0.3406 -1.3673 38 1 3.9417 -1.2850 -2.0980 39 1 6.2863 -4.4318 -0.1465 40 1 6.5691 -4.5625 -1.9088 41 1 9.1485 -4.7100 0.0454 42 1 11.1287 -3.2084 0.0967 43 1 10.9270 -0.9253 -0.8078 44 1 6.4621 -1.7109 -2.9983 45 1 6.1425 -0.6538 -1.5903 46 1 3.5948 -1.2128 3.3538 47 1 3.8909 -2.5773 2.2499 48 1 6.0179 -0.7876 1.9196 49 1 9.1874 -0.8350 2.9586 50 1 1.6977 -1.7554 1.2387 51 1 1.6572 -0.2204 2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316709411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:52 Heat of formation + Delta-G solvation = 47.925564 kcal Electronic energy + Delta-G solvation = -32521.974463 eV Core-core repulsion = 28615.661943 eV Total energy + Delta-G solvation = -3906.312520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.74485 -39.61828 -37.43365 -35.72685 -34.11246 -33.60279 -32.09939 -31.88525 -29.73602 -29.17119 -28.05833 -27.42425 -25.37539 -23.98679 -23.22391 -22.55238 -21.71185 -21.36202 -20.51132 -19.90953 -18.49898 -17.05222 -16.47504 -16.17205 -15.67302 -15.48517 -15.02666 -14.72206 -14.57652 -14.33775 -14.17578 -13.94285 -13.51490 -13.25709 -13.11573 -12.90604 -12.76351 -12.72722 -12.38903 -12.33138 -12.15792 -11.90308 -11.71798 -11.57852 -11.55919 -11.31995 -11.18195 -10.97053 -10.93351 -10.80864 -10.67954 -10.65355 -10.37238 -10.20728 -9.78360 -9.43048 -9.12483 -8.77911 -8.65995 -8.24656 -8.10769 -7.97622 -6.43258 -5.45797 -2.66474 1.68534 1.89478 3.36562 3.46000 3.57054 3.61131 3.62262 4.23721 4.45196 4.70613 4.71418 4.79558 4.81735 4.87694 4.98989 5.05634 5.21290 5.24518 5.33297 5.42848 5.49567 5.54317 5.58468 5.61997 5.63649 5.71224 5.74516 5.79418 5.81870 5.82960 5.87676 5.95810 5.98520 6.03021 6.09347 6.14301 6.15253 6.19481 6.23092 6.33363 6.40314 6.44736 6.61995 6.67701 6.74951 6.76933 7.01519 7.26753 7.36466 7.93732 8.04634 8.56030 8.69898 9.03823 9.81720 10.42575 10.77208 11.76427 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009677 B = 0.005374 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.902530 B = 5209.505454 C = 7322.851580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.128 4.128 5 C 0.110 3.890 6 N -0.615 5.615 7 C 0.484 3.516 8 O -0.438 6.438 9 C -0.107 4.107 10 H 0.101 0.899 11 C -0.063 4.063 12 C -0.127 4.127 13 C -0.056 4.056 14 C -0.167 4.167 15 C 0.108 3.892 16 N -0.475 5.475 17 C 0.122 3.878 18 C -0.056 4.056 19 C 0.143 3.857 20 H 0.065 0.935 21 C 0.161 3.839 22 N -0.696 5.696 23 C -0.209 4.209 24 H 0.061 0.939 25 C -0.016 4.016 26 N -0.927 5.927 27 Si 0.894 3.106 28 H -0.296 1.296 29 H -0.296 1.296 30 H -0.286 1.286 31 C -0.120 4.120 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.148 0.852 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.011 0.989 47 H 0.041 0.959 48 H 0.379 0.621 49 H 0.247 0.753 50 H 0.065 0.935 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 -1.449 -14.721 17.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.166 4.166 5 C -0.013 4.013 6 N -0.353 5.353 7 C 0.268 3.732 8 O -0.306 6.306 9 C -0.129 4.129 10 H 0.119 0.881 11 C -0.101 4.101 12 C -0.129 4.129 13 C -0.081 4.081 14 C -0.186 4.186 15 C -0.049 4.049 16 N -0.183 5.183 17 C -0.016 4.016 18 C -0.094 4.094 19 C 0.040 3.960 20 H 0.083 0.917 21 C 0.034 3.966 22 N -0.339 5.339 23 C -0.341 4.341 24 H 0.079 0.921 25 C -0.211 4.211 26 N -0.577 5.577 27 Si 0.727 3.273 28 H -0.224 1.224 29 H -0.223 1.223 30 H -0.212 1.212 31 C -0.159 4.159 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.166 0.834 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.028 0.972 47 H 0.059 0.941 48 H 0.213 0.787 49 H 0.057 0.943 50 H 0.084 0.916 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.690 -1.012 -14.268 17.277 hybrid contribution 0.955 -0.969 1.050 1.718 sum -8.736 -1.981 -13.217 15.967 Atomic orbital electron populations 1.21815 0.95360 1.01624 1.01400 1.21109 0.95282 0.99638 0.95023 0.91170 1.21980 0.95629 1.01150 0.97866 1.21637 0.93690 0.99165 0.86852 1.47800 1.44971 1.36714 1.05818 1.20140 0.80228 0.82166 0.90647 1.91090 1.56958 1.52541 1.29997 1.22008 0.97639 0.96534 0.96689 0.88072 1.20819 0.89834 0.96448 1.02991 1.21159 0.95518 0.96937 0.99278 1.20866 0.91744 0.99883 0.95649 1.21874 0.99373 0.95845 1.01554 1.22331 0.94528 0.93577 0.94499 1.66698 0.98918 1.36449 1.16267 1.21466 0.93974 0.90353 0.95783 1.20877 0.89191 0.99634 0.99711 1.21467 0.92308 0.97876 0.84357 0.91683 1.20890 0.86966 0.97155 0.91633 1.42200 1.01522 1.60335 1.29856 1.19072 0.90475 1.23628 1.00898 0.92068 1.24552 0.96387 1.01643 0.98546 1.69668 1.07371 1.44407 1.36238 0.86359 0.79707 0.78531 0.82713 1.22370 1.22274 1.21237 1.21960 0.95415 1.01026 0.97488 0.92837 0.92740 0.92958 0.91274 0.91634 0.91992 0.90095 0.88657 0.90303 0.85871 0.85455 0.83433 0.89398 0.89524 0.97190 0.94138 0.78743 0.94333 0.91617 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.19 37.16 0.34 -0.90 16 2 C -0.09 -0.94 2.68 -90.58 -0.24 -1.19 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.13 -1.20 5.36 -26.61 -0.14 -1.34 16 5 C 0.11 1.23 5.20 -3.71 -0.02 1.21 16 6 N -0.61 -9.54 2.93 -165.22 -0.48 -10.02 16 7 C 0.48 8.75 6.36 -10.98 -0.07 8.68 16 8 O -0.44 -10.17 9.36 5.56 0.05 -10.11 16 9 C -0.11 -1.53 2.44 -90.36 -0.22 -1.75 16 10 H 0.10 1.07 7.29 -51.93 -0.38 0.69 16 11 C -0.06 -0.98 6.08 -26.91 -0.16 -1.14 16 12 C -0.13 -2.34 6.16 -104.20 -0.64 -2.98 16 13 C -0.06 -1.02 10.17 -39.27 -0.40 -1.42 16 14 C -0.17 -2.94 10.12 -39.46 -0.40 -3.34 16 15 C 0.11 1.99 11.18 -17.62 -0.20 1.79 16 16 N -0.47 -9.50 10.35 -9.19 -0.10 -9.59 16 17 C 0.12 2.29 7.32 -82.04 -0.60 1.69 16 18 C -0.06 -0.82 5.49 -26.81 -0.15 -0.97 16 19 C 0.14 2.42 2.92 -67.60 -0.20 2.22 16 20 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 21 C 0.16 3.51 4.87 -4.04 -0.02 3.49 16 22 N -0.70 -18.70 3.24 -59.91 -0.19 -18.90 16 23 C -0.21 -6.22 9.73 -15.06 -0.15 -6.37 16 24 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 25 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 26 N -0.93 -29.19 13.06 55.49 0.72 -28.47 16 27 Si 0.89 23.93 29.55 -169.99 -5.02 18.90 16 28 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 29 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 30 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 31 C -0.12 -1.55 4.65 -26.61 -0.12 -1.68 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.75 5.45 -51.93 -0.28 0.47 16 39 H 0.10 1.71 7.03 -51.93 -0.37 1.34 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 42 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.15 2.28 8.06 -52.49 -0.42 1.86 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.09 1.35 6.88 -51.93 -0.36 0.99 16 46 H 0.01 0.23 8.13 -51.93 -0.42 -0.19 16 47 H 0.04 0.95 6.29 -51.93 -0.33 0.63 16 48 H 0.38 10.98 7.07 -40.82 -0.29 10.69 16 49 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 50 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 391.40 15.07 5.90 5.90 Total: -1.00 -36.17 391.40 -10.92 -47.09 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -8.31 Total: 9.80 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -3.49 Total: -4.59 kcal Atomic # 7 Polarization: -66.94 SS G_CDS: -0.05 Total: -66.98 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.05 Total: -10.11 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.02 Total: 18.90 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.17 -10.92 -47.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316709411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.013 kcal (2) G-P(sol) polarization free energy of solvation -36.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds