Wall clock time and date at job start Wed Apr 1 2020 03:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46294 * 2 1 4 4 C 1.53038 * 109.46016 * 240.01823 * 2 1 3 5 5 C 1.53190 * 109.31348 * 178.61287 * 4 2 1 6 6 N 1.46932 * 108.77457 * 54.64168 * 5 4 2 7 7 C 1.34779 * 120.63390 * 126.40724 * 6 5 4 8 8 O 1.21278 * 119.99837 * 185.99874 * 7 6 5 9 9 C 1.50702 * 119.99574 * 6.00493 * 7 6 5 10 10 H 1.09007 * 110.72902 * 303.39684 * 9 7 6 11 11 C 1.54367 * 110.81899 * 180.02562 * 9 7 6 12 12 C 1.51229 * 105.11508 * 268.06193 * 11 9 7 13 13 C 1.38744 * 130.69477 * 162.86450 * 12 11 9 14 14 C 1.38571 * 118.55832 * 180.02562 * 13 12 11 15 15 C 1.38223 * 118.99176 * 0.02562 * 14 13 12 16 16 N 1.31693 * 120.80077 * 359.97438 * 15 14 13 17 17 C 1.32298 * 122.03041 * 359.97438 * 16 15 14 18 18 C 1.51475 * 130.14203 * 180.02562 * 17 16 15 19 19 C 1.46922 * 118.73744 * 306.39122 * 6 5 4 20 20 H 1.09004 * 109.58630 * 293.82373 * 19 6 5 21 21 C 1.52999 * 109.58975 * 173.53294 * 19 6 5 22 22 N 1.46507 * 109.46636 * 69.47322 * 21 19 6 23 23 C 1.36936 * 120.00255 * 174.76115 * 22 21 19 24 24 H 1.08001 * 119.99277 * 359.97438 * 23 22 21 25 25 C 1.38807 * 120.00352 * 179.97438 * 23 22 21 26 26 N 1.31624 * 119.99934 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00250 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.46920 * 90.00076 * 27 25 23 29 29 H 1.48496 * 109.47539 * 210.00710 * 27 25 23 30 30 H 1.48506 * 109.46997 * 330.00976 * 27 25 23 31 31 C 1.53043 * 109.45713 * 119.95559 * 2 1 3 32 32 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46901 * 299.97824 * 1 2 3 34 34 H 1.08997 * 109.46760 * 59.97432 * 1 2 3 35 35 H 1.09001 * 109.49075 * 58.66946 * 4 2 1 36 36 H 1.08999 * 109.52904 * 298.58806 * 4 2 1 37 37 H 1.08996 * 109.58811 * 294.85492 * 5 4 2 38 38 H 1.08995 * 109.58848 * 174.42198 * 5 4 2 39 39 H 1.08996 * 110.31838 * 26.97249 * 11 9 7 40 40 H 1.09000 * 110.31303 * 149.15431 * 11 9 7 41 41 H 1.08001 * 120.71611 * 0.03239 * 13 12 11 42 42 H 1.07998 * 120.50275 * 180.02562 * 14 13 12 43 43 H 1.08001 * 119.59957 * 179.97438 * 15 14 13 44 44 H 1.09003 * 110.29399 * 78.25186 * 18 17 16 45 45 H 1.08997 * 110.29459 * 316.12419 * 18 17 16 46 46 H 1.08998 * 109.47625 * 189.46352 * 21 19 6 47 47 H 1.08999 * 109.47574 * 309.47392 * 21 19 6 48 48 H 0.97005 * 119.99968 * 354.75010 * 22 21 19 49 49 H 0.96997 * 119.99779 * 179.97438 * 26 25 23 50 50 H 1.09003 * 109.49956 * 61.43431 * 31 2 1 51 51 H 1.08997 * 109.50139 * 301.33267 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2499 5 6 3.5714 -0.6889 -1.2641 6 7 4.0679 -1.2489 0.0003 7 6 4.9620 -2.2574 0.0006 8 8 5.2820 -2.7838 1.0452 9 6 5.5642 -2.7307 -1.2973 10 1 4.7846 -3.0304 -1.9978 11 6 6.5554 -3.8885 -1.0523 12 6 7.9038 -3.2245 -0.8852 13 6 9.0879 -3.7048 -0.3447 14 6 10.1912 -2.8667 -0.3165 15 6 10.0735 -1.5869 -0.8252 16 7 8.9332 -1.1644 -1.3308 17 6 7.8581 -1.9340 -1.3768 18 6 6.4707 -1.6427 -1.9105 19 6 3.5714 -0.6885 1.2644 20 1 3.9143 0.3411 1.3673 21 6 4.0939 -1.5227 2.4357 22 7 5.5384 -1.3203 2.5732 23 6 6.2117 -1.8832 3.6243 24 1 5.6778 -2.4761 4.3522 25 6 7.5804 -1.6919 3.7543 26 7 8.2310 -0.9689 2.8675 27 14 8.4987 -2.4593 5.1886 28 1 8.9754 -3.8122 4.8042 29 1 9.6617 -1.6073 5.5446 30 1 7.5890 -2.5687 6.3573 31 6 2.0398 -0.7205 1.2503 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5135 0.8902 34 1 -0.3633 0.5142 -0.8897 35 1 1.6572 -0.2211 -2.1397 36 1 1.6978 -1.7559 -1.2385 37 1 3.9143 0.3406 -1.3673 38 1 3.9417 -1.2850 -2.0980 39 1 6.2863 -4.4318 -0.1465 40 1 6.5691 -4.5625 -1.9088 41 1 9.1485 -4.7100 0.0454 42 1 11.1287 -3.2084 0.0967 43 1 10.9270 -0.9253 -0.8078 44 1 6.4621 -1.7109 -2.9983 45 1 6.1425 -0.6538 -1.5903 46 1 3.5948 -1.2128 3.3538 47 1 3.8909 -2.5773 2.2499 48 1 6.0179 -0.7876 1.9196 49 1 9.1874 -0.8350 2.9586 50 1 1.6977 -1.7554 1.2387 51 1 1.6572 -0.2204 2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316709411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:51 Heat of formation + Delta-G solvation = 25.356182 kcal Electronic energy + Delta-G solvation = -32522.953145 eV Core-core repulsion = 28615.661943 eV Total energy + Delta-G solvation = -3907.291202 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.04814 -40.92928 -38.60410 -37.14257 -35.94047 -34.72862 -33.70459 -33.39235 -31.50369 -30.41558 -29.08612 -28.65479 -27.10619 -25.33854 -24.42898 -24.13959 -23.12710 -22.69302 -21.88855 -20.87323 -19.82114 -19.00197 -17.88633 -17.50442 -17.00221 -16.77716 -16.66818 -16.28367 -15.76335 -15.72235 -15.42222 -15.22554 -14.91026 -14.66216 -14.59664 -14.43857 -14.07843 -13.91680 -13.69927 -13.65439 -13.54244 -13.12010 -12.95859 -12.82574 -12.81026 -12.67086 -12.64104 -12.48823 -12.33666 -12.19760 -12.10903 -11.99278 -11.81914 -11.62999 -11.23832 -11.12780 -10.85395 -10.52878 -10.18393 -9.73699 -9.45979 -9.36156 -8.57919 -7.78413 -4.97800 0.31604 0.48759 1.39068 1.41113 1.48597 2.03465 2.23908 2.60502 2.89956 3.17144 3.52463 3.54359 3.69127 3.78465 3.80797 3.91374 4.02497 4.05436 4.11314 4.15971 4.33079 4.35617 4.37597 4.45454 4.48789 4.54277 4.64094 4.66110 4.73263 4.81445 4.83954 4.88372 4.89461 4.95029 4.97600 5.02417 5.06144 5.12330 5.12617 5.18189 5.20303 5.29636 5.30357 5.39452 5.41317 5.47030 5.53805 5.62454 5.91941 5.93875 6.38392 6.78669 7.16556 7.45898 7.69870 8.26366 8.50016 9.43248 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009677 B = 0.005374 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.902530 B = 5209.505454 C = 7322.851580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.121 4.121 5 C 0.101 3.899 6 N -0.612 5.612 7 C 0.478 3.522 8 O -0.504 6.504 9 C -0.095 4.095 10 H 0.154 0.846 11 C -0.059 4.059 12 C -0.146 4.146 13 C -0.081 4.081 14 C -0.175 4.175 15 C 0.087 3.913 16 N -0.502 5.502 17 C 0.098 3.902 18 C -0.048 4.048 19 C 0.149 3.851 20 H 0.050 0.950 21 C 0.165 3.835 22 N -0.700 5.700 23 C -0.213 4.213 24 H 0.054 0.946 25 C -0.071 4.071 26 N -0.953 5.953 27 Si 0.954 3.046 28 H -0.296 1.296 29 H -0.296 1.296 30 H -0.276 1.276 31 C -0.110 4.110 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.120 0.880 41 H 0.134 0.866 42 H 0.150 0.850 43 H 0.168 0.832 44 H 0.133 0.867 45 H 0.076 0.924 46 H 0.003 0.997 47 H 0.026 0.974 48 H 0.365 0.635 49 H 0.239 0.761 50 H 0.062 0.938 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.019 -1.504 -17.235 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.088 0.912 4 C -0.159 4.159 5 C -0.020 4.020 6 N -0.348 5.348 7 C 0.265 3.735 8 O -0.376 6.376 9 C -0.117 4.117 10 H 0.172 0.828 11 C -0.097 4.097 12 C -0.148 4.148 13 C -0.107 4.107 14 C -0.195 4.195 15 C -0.069 4.069 16 N -0.211 5.211 17 C -0.040 4.040 18 C -0.086 4.086 19 C 0.045 3.955 20 H 0.068 0.932 21 C 0.038 3.962 22 N -0.341 5.341 23 C -0.346 4.346 24 H 0.072 0.928 25 C -0.264 4.264 26 N -0.605 5.605 27 Si 0.786 3.214 28 H -0.225 1.225 29 H -0.223 1.223 30 H -0.202 1.202 31 C -0.149 4.149 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.126 0.874 39 H 0.083 0.917 40 H 0.138 0.862 41 H 0.152 0.848 42 H 0.168 0.832 43 H 0.185 0.815 44 H 0.150 0.850 45 H 0.095 0.905 46 H 0.020 0.980 47 H 0.044 0.956 48 H 0.197 0.803 49 H 0.048 0.952 50 H 0.081 0.919 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.885 -1.050 -16.807 20.612 hybrid contribution 1.562 -0.960 1.830 2.590 sum -10.323 -2.010 -14.977 18.301 Atomic orbital electron populations 1.21762 0.93660 1.02006 1.02252 1.21103 0.96595 0.99197 0.93874 0.91247 1.21963 0.93872 1.01561 0.98457 1.22019 0.95189 0.99621 0.85187 1.47945 1.44132 1.35835 1.06924 1.20957 0.79597 0.81543 0.91443 1.91068 1.58980 1.55072 1.32522 1.22071 0.98394 0.95762 0.95452 0.82834 1.20887 0.88461 0.97106 1.03240 1.21632 0.96668 0.97520 0.98943 1.21243 0.92457 1.00768 0.96193 1.22187 1.00317 0.95708 1.01296 1.22780 0.95075 0.94386 0.94683 1.66736 0.99801 1.37259 1.17292 1.22210 0.95273 0.90522 0.95979 1.21002 0.86588 0.98895 1.02112 1.21251 0.94891 0.95723 0.83596 0.93235 1.20904 0.84456 0.97196 0.93627 1.42217 1.03244 1.59907 1.28735 1.19331 0.91033 1.22915 1.01331 0.92760 1.25200 0.97115 1.02869 1.01169 1.69836 1.06873 1.45934 1.37864 0.85399 0.78393 0.77369 0.80272 1.22456 1.22325 1.20180 1.21882 0.92012 1.01417 0.99558 0.92677 0.92921 0.91166 0.88108 0.91406 0.91624 0.87385 0.91667 0.86169 0.84845 0.83220 0.81496 0.84954 0.90534 0.97952 0.95635 0.80325 0.95174 0.91938 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.19 71.98 0.66 -1.26 16 2 C -0.09 -1.56 2.68 -10.77 -0.03 -1.59 16 3 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.12 -1.74 5.36 30.67 0.16 -1.57 16 5 C 0.10 1.90 5.20 86.36 0.45 2.35 16 6 N -0.61 -18.24 2.93 -795.02 -2.33 -20.57 16 7 C 0.48 17.04 6.36 87.66 0.56 17.60 16 8 O -0.50 -24.14 9.36 -3.02 -0.03 -24.17 16 9 C -0.10 -2.48 2.44 -10.63 -0.03 -2.51 16 10 H 0.15 2.39 7.29 -2.38 -0.02 2.37 16 11 C -0.06 -1.77 6.08 30.48 0.19 -1.58 16 12 C -0.15 -5.38 6.16 -19.59 -0.12 -5.50 16 13 C -0.08 -3.03 10.17 22.47 0.23 -2.80 16 14 C -0.18 -6.34 10.12 22.35 0.23 -6.11 16 15 C 0.09 3.29 11.18 84.71 0.95 4.24 16 16 N -0.50 -20.33 10.35 -182.98 -1.89 -22.22 16 17 C 0.10 3.64 7.32 42.72 0.31 3.95 16 18 C -0.05 -1.29 5.49 30.54 0.17 -1.13 16 19 C 0.15 5.07 2.92 44.98 0.13 5.20 16 20 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 21 C 0.16 7.47 4.87 86.38 0.42 7.89 16 22 N -0.70 -39.25 3.24 -343.45 -1.11 -40.37 16 23 C -0.21 -13.20 9.73 84.03 0.82 -12.38 16 24 H 0.05 3.35 7.83 -2.91 -0.02 3.33 16 25 C -0.07 -4.45 5.50 84.86 0.47 -3.99 16 26 N -0.95 -62.09 13.06 21.65 0.28 -61.80 16 27 Si 0.95 50.67 29.55 68.60 2.03 52.70 16 28 H -0.30 -15.66 7.11 99.48 0.71 -14.95 16 29 H -0.30 -15.64 7.11 99.48 0.71 -14.94 16 30 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 31 C -0.11 -2.72 4.65 30.68 0.14 -2.58 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.11 1.45 5.45 -2.39 -0.01 1.43 16 39 H 0.06 2.37 7.03 -2.39 -0.02 2.36 16 40 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 42 H 0.15 4.48 8.06 -2.91 -0.02 4.45 16 43 H 0.17 5.28 8.06 -2.91 -0.02 5.26 16 44 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.08 2.24 6.88 -2.39 -0.02 2.22 16 46 H 0.00 0.13 8.13 -2.39 -0.02 0.11 16 47 H 0.03 1.27 6.29 -2.39 -0.02 1.25 16 48 H 0.37 22.11 7.07 -92.70 -0.66 21.46 16 49 H 0.24 15.37 8.31 -92.71 -0.77 14.60 16 50 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -84.51 391.40 2.92 -81.59 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: 0.27 Total: 36.60 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 5.70 Total: -1.76 kcal Atomic # 7 Polarization: -139.90 SS G_CDS: -5.06 Total: -144.96 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.03 Total: -24.17 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.03 Total: 52.70 kcal Total: -84.51 2.92 -81.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316709411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.950 kcal (2) G-P(sol) polarization free energy of solvation -84.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds