Wall clock time and date at job start Wed Apr 1 2020 03:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 109.44563 * 2 1 4 4 C 1.53035 * 109.45909 * 240.03210 * 2 1 3 5 5 C 1.53194 * 109.31104 * 178.61791 * 4 2 1 6 6 N 1.46927 * 108.77923 * 54.62803 * 5 4 2 7 7 C 1.34777 * 120.62718 * 126.36972 * 6 5 4 8 8 O 1.21276 * 119.99988 * 184.84166 * 7 6 5 9 9 C 1.50702 * 119.99965 * 4.83903 * 7 6 5 10 10 H 1.09003 * 110.72927 * 59.30081 * 9 7 6 11 11 C 1.54370 * 110.82268 * 182.70342 * 9 7 6 12 12 C 1.51753 * 104.86316 * 92.00401 * 11 9 7 13 13 C 1.38743 * 130.64886 * 197.08917 * 12 11 9 14 14 C 1.38577 * 118.55963 * 180.02562 * 13 12 11 15 15 C 1.38225 * 118.98961 * 359.97438 * 14 13 12 16 16 N 1.31690 * 120.80083 * 0.03569 * 15 14 13 17 17 C 1.32299 * 122.03315 * 359.97438 * 16 15 14 18 18 C 1.51477 * 130.14106 * 179.97438 * 17 16 15 19 19 C 1.46922 * 118.74030 * 306.40052 * 6 5 4 20 20 H 1.09001 * 109.58722 * 293.81568 * 19 6 5 21 21 C 1.52999 * 109.58727 * 173.38920 * 19 6 5 22 22 N 1.46508 * 109.46997 * 70.16587 * 21 19 6 23 23 C 1.36936 * 120.00008 * 174.60043 * 22 21 19 24 24 H 1.08004 * 120.00309 * 0.02562 * 23 22 21 25 25 C 1.38806 * 120.00192 * 179.97438 * 23 22 21 26 26 N 1.31621 * 120.00163 * 180.02562 * 25 23 22 27 27 Si 1.86806 * 119.99933 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.46877 * 89.99525 * 27 25 23 29 29 H 1.48502 * 109.47301 * 209.99534 * 27 25 23 30 30 H 1.48497 * 109.47107 * 329.99740 * 27 25 23 31 31 C 1.53044 * 109.45428 * 119.96311 * 2 1 3 32 32 H 1.08999 * 109.47387 * 300.03360 * 1 2 3 33 33 H 1.09004 * 109.46871 * 60.03873 * 1 2 3 34 34 H 1.09003 * 109.46799 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.50094 * 298.56581 * 4 2 1 36 36 H 1.08996 * 109.50140 * 58.62968 * 4 2 1 37 37 H 1.08995 * 109.58817 * 174.42527 * 5 4 2 38 38 H 1.09010 * 109.58338 * 294.70299 * 5 4 2 39 39 H 1.08997 * 110.31612 * 210.84721 * 11 9 7 40 40 H 1.09002 * 110.30971 * 333.02782 * 11 9 7 41 41 H 1.08003 * 120.71653 * 0.05424 * 13 12 11 42 42 H 1.07995 * 120.50478 * 180.02562 * 14 13 12 43 43 H 1.07995 * 119.59873 * 180.02562 * 15 14 13 44 44 H 1.08999 * 110.29639 * 43.87052 * 18 17 16 45 45 H 1.09002 * 110.29263 * 281.73671 * 18 17 16 46 46 H 1.08992 * 109.47495 * 190.16573 * 21 19 6 47 47 H 1.09002 * 109.47328 * 310.17383 * 21 19 6 48 48 H 0.96995 * 119.99887 * 354.60409 * 22 21 19 49 49 H 0.97003 * 119.99987 * 180.02562 * 26 25 23 50 50 H 1.08994 * 109.49743 * 61.44364 * 31 2 1 51 51 H 1.08993 * 109.52695 * 301.34835 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6887 -1.2641 6 7 4.0679 -1.2487 0.0002 7 6 4.9615 -2.2577 0.0002 8 8 5.2973 -2.7702 1.0468 9 6 5.5432 -2.7491 -1.3002 10 1 6.0636 -1.9439 -1.8188 11 6 6.4864 -3.9476 -1.0614 12 6 5.6037 -5.1731 -1.2091 13 6 5.8052 -6.4858 -0.8075 14 6 4.8167 -7.4195 -1.0748 15 6 3.6693 -7.0118 -1.7289 16 7 3.5120 -5.7569 -2.0958 17 6 4.4320 -4.8361 -1.8592 18 6 4.4443 -3.3590 -2.1951 19 6 3.5714 -0.6885 1.2644 20 1 3.9142 0.3410 1.3675 21 6 4.0911 -1.5249 2.4353 22 7 5.5330 -1.3129 2.5849 23 6 6.2017 -1.8738 3.6400 24 1 5.6663 -2.4728 4.3618 25 6 7.5679 -1.6734 3.7814 26 7 8.2108 -2.2129 4.7954 27 14 8.4942 -0.6379 2.5327 28 1 8.4922 0.7818 2.9680 29 1 9.8943 -1.1220 2.4293 30 1 7.8325 -0.7504 1.2081 31 6 2.0398 -0.7207 1.2502 32 1 -0.3634 0.5143 0.8897 33 1 -0.3633 0.5133 -0.8904 34 1 -0.3633 -1.0277 0.0005 35 1 1.6979 -1.7557 -1.2383 36 1 1.6568 -0.2212 -2.1398 37 1 3.9417 -1.2845 -2.0983 38 1 3.9143 0.3407 -1.3698 39 1 7.2801 -3.9593 -1.8084 40 1 6.9104 -3.9013 -0.0583 41 1 6.7126 -6.7735 -0.2973 42 1 4.9406 -8.4499 -0.7759 43 1 2.8925 -7.7312 -1.9418 44 1 3.4774 -2.9111 -1.9660 45 1 4.6900 -3.2126 -3.2469 46 1 3.5827 -1.2235 3.3511 47 1 3.8972 -2.5801 2.2425 48 1 6.0139 -0.7752 1.9365 49 1 9.1655 -2.0725 4.8944 50 1 1.6979 -1.7556 1.2384 51 1 1.6572 -0.2212 2.1401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316709420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:55 Heat of formation + Delta-G solvation = 53.865525 kcal Electronic energy + Delta-G solvation = -32244.488253 eV Core-core repulsion = 28338.433309 eV Total energy + Delta-G solvation = -3906.054944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.14048 -39.95955 -37.61607 -36.14340 -34.34387 -33.77906 -32.58456 -32.00461 -30.26233 -29.52313 -28.25728 -27.80566 -25.68899 -24.26538 -23.38381 -22.40270 -21.92637 -21.75038 -20.79926 -20.07145 -18.64546 -17.54606 -16.83309 -16.61229 -16.12552 -15.65999 -15.36269 -14.94447 -14.72688 -14.47517 -14.34030 -14.05135 -13.74293 -13.57685 -13.50457 -13.27875 -12.97821 -12.76605 -12.67815 -12.55131 -12.29373 -12.07694 -11.97001 -11.89132 -11.70319 -11.61536 -11.38861 -11.23214 -11.18370 -11.02705 -10.77409 -10.76512 -10.45775 -10.18616 -9.95968 -9.66868 -9.39284 -9.29693 -8.75937 -8.70527 -8.37106 -8.17432 -6.81383 -5.55378 -2.82150 1.12777 1.33939 3.15453 3.24605 3.47280 3.48921 3.53960 3.77122 3.92238 4.44033 4.58238 4.62153 4.69900 4.72524 4.77210 4.83096 4.89175 4.97538 5.06416 5.17400 5.20991 5.27626 5.35118 5.40848 5.46447 5.50665 5.51617 5.60341 5.63313 5.65414 5.67808 5.76050 5.76468 5.82284 5.84844 5.92392 5.97430 6.00178 6.07625 6.11081 6.15630 6.18990 6.22116 6.39045 6.41299 6.58785 6.73024 6.87040 7.21882 7.83521 7.99459 8.20605 8.62780 8.80944 9.44169 10.17392 10.38922 11.64764 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.007545 B = 0.005848 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3710.109140 B = 4787.049730 C = 7291.384157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.130 4.130 5 C 0.100 3.900 6 N -0.615 5.615 7 C 0.482 3.518 8 O -0.441 6.441 9 C -0.110 4.110 10 H 0.107 0.893 11 C -0.071 4.071 12 C -0.127 4.127 13 C -0.062 4.062 14 C -0.173 4.173 15 C 0.094 3.906 16 N -0.481 5.481 17 C 0.114 3.886 18 C -0.065 4.065 19 C 0.139 3.861 20 H 0.067 0.933 21 C 0.166 3.834 22 N -0.724 5.724 23 C -0.206 4.206 24 H 0.085 0.915 25 C -0.005 4.005 26 N -0.945 5.945 27 Si 0.882 3.118 28 H -0.290 1.290 29 H -0.295 1.295 30 H -0.281 1.281 31 C -0.121 4.121 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.154 0.846 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.022 0.978 47 H 0.048 0.952 48 H 0.355 0.645 49 H 0.254 0.746 50 H 0.067 0.933 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.585 -0.968 -19.211 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.088 0.912 4 C -0.168 4.168 5 C -0.023 4.023 6 N -0.353 5.353 7 C 0.267 3.733 8 O -0.309 6.309 9 C -0.132 4.132 10 H 0.125 0.875 11 C -0.109 4.109 12 C -0.129 4.129 13 C -0.088 4.088 14 C -0.193 4.193 15 C -0.064 4.064 16 N -0.190 5.190 17 C -0.024 4.024 18 C -0.103 4.103 19 C 0.036 3.964 20 H 0.085 0.915 21 C 0.039 3.961 22 N -0.369 5.369 23 C -0.336 4.336 24 H 0.103 0.897 25 C -0.199 4.199 26 N -0.596 5.596 27 Si 0.715 3.285 28 H -0.218 1.218 29 H -0.222 1.222 30 H -0.208 1.208 31 C -0.160 4.160 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.124 0.876 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.171 0.829 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.040 0.960 47 H 0.066 0.934 48 H 0.187 0.813 49 H 0.064 0.936 50 H 0.085 0.915 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.105 -1.181 -18.829 22.971 hybrid contribution 1.567 0.410 -0.515 1.700 sum -11.538 -0.770 -19.344 22.537 Atomic orbital electron populations 1.21816 0.95189 1.01781 1.01466 1.21099 0.95476 0.99502 0.94863 0.91154 1.21990 0.95299 1.01441 0.98065 1.21833 0.94174 0.99271 0.87010 1.47872 1.44852 1.36502 1.06113 1.20214 0.80568 0.81788 0.90767 1.91136 1.56644 1.53127 1.29997 1.22038 0.96783 0.98805 0.95537 0.87541 1.21044 0.96146 0.88645 1.05036 1.21540 0.97649 0.95310 0.98361 1.21122 0.99395 0.91755 0.96484 1.22041 0.95370 1.00683 1.01176 1.22528 0.96509 0.91942 0.95390 1.66791 1.31103 1.01607 1.19477 1.21706 0.90065 0.95529 0.95065 1.21149 1.00057 0.89092 0.99957 1.21545 0.92860 0.97777 0.84219 0.91470 1.20856 0.85612 0.97642 0.92016 1.42569 1.03471 1.61108 1.29709 1.19007 0.91146 1.23502 0.99970 0.89736 1.24544 0.96157 1.01238 0.97944 1.69702 1.08297 1.50008 1.31590 0.86541 0.79493 0.80458 0.82047 1.21766 1.22200 1.20761 1.21962 0.95017 1.01316 0.97697 0.92651 0.92893 0.92740 0.91412 0.91052 0.89375 0.91917 0.89558 0.87555 0.84854 0.84727 0.82866 0.88727 0.88749 0.96005 0.93427 0.81261 0.93578 0.91461 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.19 37.16 0.34 -0.89 16 2 C -0.09 -0.89 2.68 -90.58 -0.24 -1.13 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.13 -1.18 5.21 -26.61 -0.14 -1.32 16 5 C 0.10 1.03 5.44 -3.71 -0.02 1.01 16 6 N -0.62 -9.01 2.97 -165.22 -0.49 -9.50 16 7 C 0.48 8.30 6.51 -10.98 -0.07 8.23 16 8 O -0.44 -9.84 9.33 5.56 0.05 -9.79 16 9 C -0.11 -1.47 2.54 -90.38 -0.23 -1.70 16 10 H 0.11 1.18 8.10 -51.93 -0.42 0.76 16 11 C -0.07 -1.03 6.14 -26.65 -0.16 -1.19 16 12 C -0.13 -1.86 6.17 -103.94 -0.64 -2.51 16 13 C -0.06 -0.84 10.17 -39.27 -0.40 -1.24 16 14 C -0.17 -2.04 10.12 -39.46 -0.40 -2.44 16 15 C 0.09 1.15 11.18 -17.62 -0.20 0.95 16 16 N -0.48 -6.95 10.35 -9.19 -0.10 -7.05 16 17 C 0.11 1.63 7.32 -82.03 -0.60 1.03 16 18 C -0.06 -0.75 4.94 -26.83 -0.13 -0.88 16 19 C 0.14 2.20 2.92 -67.60 -0.20 2.00 16 20 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 21 C 0.17 3.47 4.87 -4.04 -0.02 3.45 16 22 N -0.72 -18.24 3.05 -59.91 -0.18 -18.42 16 23 C -0.21 -6.16 10.23 -15.06 -0.15 -6.32 16 24 H 0.08 2.75 8.06 -52.48 -0.42 2.32 16 25 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 26 N -0.95 -31.17 13.97 55.49 0.78 -30.39 16 27 Si 0.88 23.39 27.74 -169.99 -4.71 18.68 16 28 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 29 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 30 H -0.28 -7.05 6.52 56.52 0.37 -6.68 16 31 C -0.12 -1.51 4.64 -26.61 -0.12 -1.64 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.69 7.71 -51.93 -0.40 0.29 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.77 4.36 -51.93 -0.23 0.54 16 38 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.11 1.93 6.99 -51.93 -0.36 1.57 16 41 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 42 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 43 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 44 H 0.09 1.07 5.30 -51.93 -0.28 0.80 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.02 0.47 8.12 -51.93 -0.42 0.05 16 47 H 0.05 1.11 6.28 -51.93 -0.33 0.78 16 48 H 0.35 8.87 4.96 -40.82 -0.20 8.67 16 49 H 0.25 8.01 8.31 -40.82 -0.34 7.67 16 50 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -36.88 385.83 -10.47 -47.35 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -8.15 Total: 8.14 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -3.49 Total: -4.83 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: 0.01 Total: -65.37 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.05 Total: -9.79 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.71 Total: 18.68 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.88 -10.47 -47.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316709420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.215 kcal (2) G-P(sol) polarization free energy of solvation -36.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds