Wall clock time and date at job start Wed Apr 1 2020 03:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 109.44563 * 2 1 4 4 C 1.53035 * 109.45909 * 240.03210 * 2 1 3 5 5 C 1.53194 * 109.31104 * 178.61791 * 4 2 1 6 6 N 1.46927 * 108.77923 * 54.62803 * 5 4 2 7 7 C 1.34777 * 120.62718 * 126.36972 * 6 5 4 8 8 O 1.21276 * 119.99988 * 184.84166 * 7 6 5 9 9 C 1.50702 * 119.99965 * 4.83903 * 7 6 5 10 10 H 1.09003 * 110.72927 * 59.30081 * 9 7 6 11 11 C 1.54370 * 110.82268 * 182.70342 * 9 7 6 12 12 C 1.51753 * 104.86316 * 92.00401 * 11 9 7 13 13 C 1.38743 * 130.64886 * 197.08917 * 12 11 9 14 14 C 1.38577 * 118.55963 * 180.02562 * 13 12 11 15 15 C 1.38225 * 118.98961 * 359.97438 * 14 13 12 16 16 N 1.31690 * 120.80083 * 0.03569 * 15 14 13 17 17 C 1.32299 * 122.03315 * 359.97438 * 16 15 14 18 18 C 1.51477 * 130.14106 * 179.97438 * 17 16 15 19 19 C 1.46922 * 118.74030 * 306.40052 * 6 5 4 20 20 H 1.09001 * 109.58722 * 293.81568 * 19 6 5 21 21 C 1.52999 * 109.58727 * 173.38920 * 19 6 5 22 22 N 1.46508 * 109.46997 * 70.16587 * 21 19 6 23 23 C 1.36936 * 120.00008 * 174.60043 * 22 21 19 24 24 H 1.08004 * 120.00309 * 0.02562 * 23 22 21 25 25 C 1.38806 * 120.00192 * 179.97438 * 23 22 21 26 26 N 1.31621 * 120.00163 * 180.02562 * 25 23 22 27 27 Si 1.86806 * 119.99933 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.46877 * 89.99525 * 27 25 23 29 29 H 1.48502 * 109.47301 * 209.99534 * 27 25 23 30 30 H 1.48497 * 109.47107 * 329.99740 * 27 25 23 31 31 C 1.53044 * 109.45428 * 119.96311 * 2 1 3 32 32 H 1.08999 * 109.47387 * 300.03360 * 1 2 3 33 33 H 1.09004 * 109.46871 * 60.03873 * 1 2 3 34 34 H 1.09003 * 109.46799 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.50094 * 298.56581 * 4 2 1 36 36 H 1.08996 * 109.50140 * 58.62968 * 4 2 1 37 37 H 1.08995 * 109.58817 * 174.42527 * 5 4 2 38 38 H 1.09010 * 109.58338 * 294.70299 * 5 4 2 39 39 H 1.08997 * 110.31612 * 210.84721 * 11 9 7 40 40 H 1.09002 * 110.30971 * 333.02782 * 11 9 7 41 41 H 1.08003 * 120.71653 * 0.05424 * 13 12 11 42 42 H 1.07995 * 120.50478 * 180.02562 * 14 13 12 43 43 H 1.07995 * 119.59873 * 180.02562 * 15 14 13 44 44 H 1.08999 * 110.29639 * 43.87052 * 18 17 16 45 45 H 1.09002 * 110.29263 * 281.73671 * 18 17 16 46 46 H 1.08992 * 109.47495 * 190.16573 * 21 19 6 47 47 H 1.09002 * 109.47328 * 310.17383 * 21 19 6 48 48 H 0.96995 * 119.99887 * 354.60409 * 22 21 19 49 49 H 0.97003 * 119.99987 * 180.02562 * 26 25 23 50 50 H 1.08994 * 109.49743 * 61.44364 * 31 2 1 51 51 H 1.08993 * 109.52695 * 301.34835 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6887 -1.2641 6 7 4.0679 -1.2487 0.0002 7 6 4.9615 -2.2577 0.0002 8 8 5.2973 -2.7702 1.0468 9 6 5.5432 -2.7491 -1.3002 10 1 6.0636 -1.9439 -1.8188 11 6 6.4864 -3.9476 -1.0614 12 6 5.6037 -5.1731 -1.2091 13 6 5.8052 -6.4858 -0.8075 14 6 4.8167 -7.4195 -1.0748 15 6 3.6693 -7.0118 -1.7289 16 7 3.5120 -5.7569 -2.0958 17 6 4.4320 -4.8361 -1.8592 18 6 4.4443 -3.3590 -2.1951 19 6 3.5714 -0.6885 1.2644 20 1 3.9142 0.3410 1.3675 21 6 4.0911 -1.5249 2.4353 22 7 5.5330 -1.3129 2.5849 23 6 6.2017 -1.8738 3.6400 24 1 5.6663 -2.4728 4.3618 25 6 7.5679 -1.6734 3.7814 26 7 8.2108 -2.2129 4.7954 27 14 8.4942 -0.6379 2.5327 28 1 8.4922 0.7818 2.9680 29 1 9.8943 -1.1220 2.4293 30 1 7.8325 -0.7504 1.2081 31 6 2.0398 -0.7207 1.2502 32 1 -0.3634 0.5143 0.8897 33 1 -0.3633 0.5133 -0.8904 34 1 -0.3633 -1.0277 0.0005 35 1 1.6979 -1.7557 -1.2383 36 1 1.6568 -0.2212 -2.1398 37 1 3.9417 -1.2845 -2.0983 38 1 3.9143 0.3407 -1.3698 39 1 7.2801 -3.9593 -1.8084 40 1 6.9104 -3.9013 -0.0583 41 1 6.7126 -6.7735 -0.2973 42 1 4.9406 -8.4499 -0.7759 43 1 2.8925 -7.7312 -1.9418 44 1 3.4774 -2.9111 -1.9660 45 1 4.6900 -3.2126 -3.2469 46 1 3.5827 -1.2235 3.3511 47 1 3.8972 -2.5801 2.2425 48 1 6.0139 -0.7752 1.9365 49 1 9.1655 -2.0725 4.8944 50 1 1.6979 -1.7556 1.2384 51 1 1.6572 -0.2212 2.1401 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316709420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:54 Heat of formation + Delta-G solvation = 29.994569 kcal Electronic energy + Delta-G solvation = -32245.523375 eV Core-core repulsion = 28338.433309 eV Total energy + Delta-G solvation = -3907.090066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.24490 -41.06815 -38.68891 -37.40050 -36.09842 -34.82375 -33.88588 -33.51431 -32.03060 -30.51484 -29.21632 -28.80890 -27.32553 -25.39106 -24.25611 -24.09357 -23.25434 -22.77682 -22.06965 -21.05302 -20.00583 -19.37620 -18.08143 -17.64910 -17.10678 -16.83176 -16.71834 -16.41435 -15.86194 -15.74105 -15.64008 -15.29213 -14.86861 -14.77660 -14.73945 -14.55672 -14.41460 -13.99698 -13.87651 -13.67045 -13.58345 -13.50894 -13.11845 -12.92520 -12.80143 -12.76958 -12.66848 -12.51224 -12.41419 -12.25595 -12.19601 -11.98775 -11.83742 -11.69477 -11.29583 -11.18474 -10.94265 -10.69525 -10.31642 -9.89257 -9.62420 -9.51559 -8.91772 -7.95210 -5.18978 0.14384 0.30786 1.30000 1.36545 1.43769 1.90927 2.10333 2.52121 2.77899 2.97324 3.35811 3.43188 3.50499 3.64430 3.68540 3.85226 3.91853 3.93533 4.02537 4.04229 4.20294 4.28006 4.29321 4.32705 4.37510 4.46978 4.55279 4.57147 4.68068 4.69492 4.77673 4.79030 4.81159 4.84180 4.93017 4.95304 4.95839 4.99426 5.05234 5.13682 5.16643 5.20130 5.24350 5.32573 5.33961 5.43383 5.59024 5.76385 5.77745 5.83819 6.27286 6.65042 6.99401 7.16219 7.54697 7.94430 8.15250 9.28621 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.007545 B = 0.005848 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3710.109140 B = 4787.049730 C = 7291.384157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 H 0.081 0.919 4 C -0.125 4.125 5 C 0.092 3.908 6 N -0.613 5.613 7 C 0.476 3.524 8 O -0.510 6.510 9 C -0.104 4.104 10 H 0.141 0.859 11 C -0.070 4.070 12 C -0.154 4.154 13 C -0.085 4.085 14 C -0.171 4.171 15 C 0.087 3.913 16 N -0.500 5.500 17 C 0.099 3.901 18 C -0.054 4.054 19 C 0.146 3.854 20 H 0.074 0.926 21 C 0.169 3.831 22 N -0.719 5.719 23 C -0.195 4.195 24 H 0.039 0.961 25 C -0.076 4.076 26 N -0.996 5.996 27 Si 0.960 3.040 28 H -0.279 1.279 29 H -0.298 1.298 30 H -0.259 1.259 31 C -0.114 4.114 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.060 0.940 41 H 0.135 0.865 42 H 0.164 0.836 43 H 0.186 0.814 44 H 0.100 0.900 45 H 0.132 0.868 46 H 0.012 0.988 47 H 0.020 0.980 48 H 0.359 0.641 49 H 0.253 0.747 50 H 0.050 0.950 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.060 0.988 -23.694 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 H 0.100 0.900 4 C -0.163 4.163 5 C -0.029 4.029 6 N -0.349 5.349 7 C 0.263 3.737 8 O -0.383 6.383 9 C -0.125 4.125 10 H 0.159 0.841 11 C -0.108 4.108 12 C -0.155 4.155 13 C -0.110 4.110 14 C -0.191 4.191 15 C -0.070 4.070 16 N -0.209 5.209 17 C -0.038 4.038 18 C -0.091 4.091 19 C 0.042 3.958 20 H 0.092 0.908 21 C 0.042 3.958 22 N -0.363 5.363 23 C -0.327 4.327 24 H 0.057 0.943 25 C -0.265 4.265 26 N -0.650 5.650 27 Si 0.789 3.211 28 H -0.205 1.205 29 H -0.225 1.225 30 H -0.184 1.184 31 C -0.153 4.153 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.078 0.922 41 H 0.153 0.847 42 H 0.182 0.818 43 H 0.203 0.797 44 H 0.118 0.882 45 H 0.150 0.850 46 H 0.030 0.970 47 H 0.038 0.962 48 H 0.192 0.808 49 H 0.061 0.939 50 H 0.069 0.931 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.659 0.817 -23.379 27.607 hybrid contribution 1.902 -0.354 0.942 2.151 sum -12.758 0.463 -22.437 25.815 Atomic orbital electron populations 1.21778 0.93991 1.01668 1.02447 1.21092 0.96397 0.99576 0.93393 0.90031 1.21983 0.94268 1.01083 0.98918 1.22227 0.95048 1.00479 0.85123 1.48043 1.43883 1.35660 1.07318 1.21013 0.80072 0.81146 0.91479 1.91125 1.58966 1.55575 1.32608 1.22081 0.97244 0.99234 0.93964 0.84123 1.21012 0.97119 0.89575 1.03084 1.21752 0.98453 0.95783 0.99550 1.21425 1.00322 0.92314 0.96977 1.22379 0.94628 1.01763 1.00311 1.23136 0.97294 0.92008 0.94528 1.66868 1.31291 1.02449 1.20303 1.22147 0.89692 0.96920 0.95069 1.21206 0.99444 0.87062 1.01406 1.21363 0.94885 0.96538 0.82995 0.90820 1.20836 0.83472 0.97211 0.94238 1.42419 1.04901 1.60610 1.28343 1.18914 0.91438 1.22190 1.00178 0.94275 1.25378 0.97084 1.03511 1.00568 1.69911 1.08475 1.52406 1.34193 0.85300 0.77347 0.78497 0.79967 1.20526 1.22526 1.18444 1.21909 0.92348 1.01020 0.99980 0.92661 0.90979 0.93418 0.92586 0.87741 0.87247 0.89897 0.86968 0.92175 0.84724 0.81840 0.79744 0.88230 0.84973 0.97002 0.96233 0.80839 0.93872 0.93072 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.19 71.98 0.66 -1.27 16 2 C -0.09 -1.39 2.68 -10.76 -0.03 -1.42 16 3 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.12 -1.73 5.21 30.67 0.16 -1.57 16 5 C 0.09 1.49 5.44 86.36 0.47 1.96 16 6 N -0.61 -16.77 2.97 -795.02 -2.36 -19.13 16 7 C 0.48 16.10 6.51 87.66 0.57 16.68 16 8 O -0.51 -23.71 9.33 -3.02 -0.03 -23.74 16 9 C -0.10 -2.55 2.54 -10.64 -0.03 -2.57 16 10 H 0.14 2.49 8.10 -2.39 -0.02 2.47 16 11 C -0.07 -2.02 6.14 30.65 0.19 -1.83 16 12 C -0.15 -4.53 6.17 -19.42 -0.12 -4.65 16 13 C -0.08 -2.35 10.17 22.47 0.23 -2.12 16 14 C -0.17 -3.91 10.12 22.35 0.23 -3.69 16 15 C 0.09 2.02 11.18 84.71 0.95 2.96 16 16 N -0.50 -13.72 10.35 -182.98 -1.89 -15.62 16 17 C 0.10 2.70 7.32 42.72 0.31 3.01 16 18 C -0.05 -1.07 4.94 30.53 0.15 -0.92 16 19 C 0.15 4.51 2.92 44.98 0.13 4.64 16 20 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 21 C 0.17 7.40 4.87 86.38 0.42 7.82 16 22 N -0.72 -37.42 3.05 -343.45 -1.05 -38.46 16 23 C -0.20 -12.38 10.23 84.03 0.86 -11.52 16 24 H 0.04 2.77 8.06 -2.91 -0.02 2.74 16 25 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 26 N -1.00 -68.85 13.97 21.65 0.30 -68.55 16 27 Si 0.96 49.58 27.74 68.60 1.90 51.48 16 28 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 29 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 30 H -0.26 -12.27 6.52 99.48 0.65 -11.62 16 31 C -0.11 -2.71 4.64 30.67 0.14 -2.57 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.95 7.71 -2.39 -0.02 0.93 16 36 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.11 1.33 4.36 -2.39 -0.01 1.32 16 38 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.06 2.31 6.99 -2.39 -0.02 2.29 16 41 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 43 H 0.19 2.89 8.06 -2.91 -0.02 2.86 16 44 H 0.10 1.91 5.30 -2.39 -0.01 1.90 16 45 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.01 0.55 8.12 -2.39 -0.02 0.53 16 47 H 0.02 0.99 6.28 -2.39 -0.01 0.98 16 48 H 0.36 17.92 4.96 -92.71 -0.46 17.45 16 49 H 0.25 16.59 8.31 -92.71 -0.77 15.82 16 50 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -87.90 385.83 3.05 -84.85 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.41 Total: 30.66 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 5.76 Total: -1.49 kcal Atomic # 7 Polarization: -136.76 SS G_CDS: -5.00 Total: -141.76 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.03 Total: -23.74 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 1.90 Total: 51.48 kcal Total: -87.90 3.05 -84.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316709420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.846 kcal (2) G-P(sol) polarization free energy of solvation -87.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds