Wall clock time and date at job start Wed Apr 1 2020 02:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47364 * 2 1 4 4 N 1.46501 * 109.47639 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99604 * 272.73528 * 4 3 2 6 6 H 1.08004 * 120.00492 * 34.97644 * 5 4 3 7 7 C 1.38817 * 119.99926 * 214.97970 * 5 4 3 8 8 N 1.31620 * 119.99821 * 23.25028 * 7 5 4 9 9 Si 1.86799 * 120.00140 * 203.25552 * 7 5 4 10 10 H 1.48498 * 109.47001 * 89.99529 * 9 7 5 11 11 H 1.48501 * 109.47155 * 209.99678 * 9 7 5 12 12 H 1.48501 * 109.47001 * 329.99971 * 9 7 5 13 13 C 1.46497 * 120.00425 * 92.72779 * 4 3 2 14 14 C 1.53003 * 109.47157 * 270.00800 * 13 4 3 15 15 N 1.46499 * 109.46804 * 180.02562 * 14 13 4 16 16 C 1.34779 * 119.99969 * 179.97438 * 15 14 13 17 17 O 1.21290 * 119.99934 * 359.97438 * 16 15 14 18 18 C 1.50694 * 120.00364 * 179.97438 * 16 15 14 19 19 C 1.50697 * 109.47285 * 180.02562 * 18 16 15 20 20 C 1.34237 * 126.50413 * 262.82896 * 19 18 16 21 21 N 1.36839 * 109.93419 * 179.47810 * 20 19 18 22 22 H 0.96993 * 125.06435 * 179.97438 * 21 20 19 23 23 C 1.37687 * 109.86612 * 0.65191 * 21 20 19 24 24 C 1.39124 * 133.50494 * 179.27688 * 23 21 20 25 25 C 1.37750 * 119.77939 * 179.97438 * 24 23 21 26 26 C 1.38835 * 120.66619 * 0.02562 * 25 24 23 27 27 C 1.36621 * 120.52390 * 359.97438 * 26 25 24 28 28 C 1.50709 * 120.11381 * 180.02562 * 27 26 25 29 29 C 1.39624 * 119.76850 * 0.27492 * 27 26 25 30 30 H 1.09004 * 109.46830 * 300.00101 * 1 2 3 31 31 H 1.09000 * 109.47014 * 59.99852 * 1 2 3 32 32 H 1.08994 * 109.46964 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46830 * 239.99899 * 2 1 3 34 34 H 1.08997 * 109.47302 * 119.99704 * 2 1 3 35 35 H 1.09004 * 109.47294 * 59.99591 * 3 2 1 36 36 H 1.09000 * 109.47176 * 300.00049 * 3 2 1 37 37 H 0.97003 * 119.99998 * 179.97438 * 8 7 5 38 38 H 1.08999 * 109.47340 * 150.00368 * 13 4 3 39 39 H 1.09000 * 109.47095 * 30.00445 * 13 4 3 40 40 H 1.08999 * 109.47348 * 59.99574 * 14 13 4 41 41 H 1.08998 * 109.46433 * 299.99458 * 14 13 4 42 42 H 0.97001 * 120.00607 * 359.97438 * 15 14 13 43 43 H 1.08999 * 109.47150 * 59.99961 * 18 16 15 44 44 H 1.09000 * 109.47242 * 300.00064 * 18 16 15 45 45 H 1.08011 * 125.03110 * 0.02562 * 20 19 18 46 46 H 1.07998 * 120.11322 * 0.02562 * 24 23 21 47 47 H 1.07999 * 119.66702 * 180.02562 * 25 24 23 48 48 H 1.07997 * 119.73575 * 180.02562 * 26 25 24 49 49 H 1.09003 * 109.46979 * 95.91092 * 28 27 26 50 50 H 1.08994 * 109.47361 * 335.91496 * 28 27 26 51 51 H 1.09001 * 109.46914 * 215.91348 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.3858 1.1837 6 1 3.7968 0.8095 2.0081 7 6 5.3903 2.0690 1.3247 8 7 5.6535 3.1027 0.5537 9 14 6.6316 1.5214 2.6086 10 1 7.5556 0.5246 2.0103 11 1 7.4083 2.6964 3.0792 12 1 5.9178 0.9076 3.7571 13 6 4.2371 1.5031 -1.2681 14 6 4.4918 0.0833 -1.7784 15 7 5.2244 0.1440 -3.0456 16 6 5.5616 -0.9940 -3.6842 17 8 5.2590 -2.0683 -3.2095 18 6 6.3147 -0.9316 -4.9880 19 6 6.5657 -2.3300 -5.4905 20 6 7.6895 -3.0465 -5.3301 21 7 7.5454 -4.2767 -5.9117 22 1 8.2241 -4.9695 -5.9256 23 6 6.2988 -4.3790 -6.4874 24 6 5.6535 -5.3830 -7.2023 25 6 4.3700 -5.1805 -7.6595 26 6 3.7118 -3.9828 -7.4148 27 6 4.3268 -2.9836 -6.7149 28 6 3.6035 -1.6874 -6.4540 29 6 5.6295 -3.1654 -6.2466 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 6.4920 3.5804 0.6524 38 1 5.1896 2.0101 -1.1138 39 1 3.6478 2.0527 -2.0021 40 1 3.5393 -0.4237 -1.9327 41 1 5.0812 -0.4661 -1.0443 42 1 5.4668 1.0032 -3.4251 43 1 7.2669 -0.4242 -4.8337 44 1 5.7252 -0.3825 -5.7222 45 1 8.5731 -2.7059 -4.8106 46 1 6.1569 -6.3184 -7.3975 47 1 3.8706 -5.9613 -8.2139 48 1 2.7055 -3.8403 -7.7799 49 1 3.1426 -1.7208 -5.4668 50 1 2.8321 -1.5431 -7.2103 51 1 4.3127 -0.8607 -6.4961 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317547846.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:23 Heat of formation + Delta-G solvation = 26.188128 kcal Electronic energy + Delta-G solvation = -29915.315343 eV Core-core repulsion = 26008.060217 eV Total energy + Delta-G solvation = -3907.255126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.37661 -39.02350 -37.19653 -36.46317 -34.11586 -33.66053 -32.86601 -31.41663 -30.72472 -29.35803 -28.68754 -27.38723 -25.88912 -25.55260 -23.34230 -22.13345 -21.92835 -21.05662 -20.44625 -20.03915 -19.02834 -17.50242 -16.96396 -16.46804 -16.26653 -15.49544 -15.27776 -15.13100 -14.79349 -14.51911 -14.40137 -14.26339 -13.88562 -13.44195 -13.29090 -13.19424 -13.05758 -12.96056 -12.72710 -12.62250 -12.50264 -12.07269 -11.97224 -11.57195 -11.46237 -11.36671 -11.18701 -11.12570 -10.93396 -10.74702 -10.72319 -10.39139 -10.33141 -10.04885 -9.84474 -9.72266 -9.57055 -9.23549 -8.53324 -8.35678 -8.21765 -7.56970 -6.64950 -5.83240 -3.38388 1.10786 1.63301 2.60086 3.07796 3.12489 3.35746 3.43195 3.45637 3.75542 3.94617 4.47558 4.65497 4.74897 4.89312 4.96545 5.12934 5.19098 5.25746 5.29088 5.38870 5.45781 5.47980 5.53361 5.68056 5.68380 5.74008 5.78046 5.78585 5.89765 6.04891 6.08572 6.16274 6.18258 6.27947 6.30040 6.44994 6.45654 6.56792 6.62687 6.64490 6.68092 6.69418 6.79325 6.98701 6.98892 7.08278 7.15933 7.19929 7.48177 7.59075 7.80482 8.06592 8.46587 8.75793 9.14792 9.77977 10.34164 11.16688 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.002764 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.545126 B =10127.452388 C =11534.074137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.258 4.258 6 H 0.063 0.937 7 C 0.011 3.989 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.277 1.277 13 C 0.135 3.865 14 C 0.099 3.901 15 N -0.725 5.725 16 C 0.506 3.494 17 O -0.537 6.537 18 C -0.073 4.073 19 C -0.142 4.142 20 C 0.056 3.944 21 N -0.595 5.595 22 H 0.414 0.586 23 C 0.099 3.901 24 C -0.141 4.141 25 C -0.097 4.097 26 C -0.155 4.155 27 C -0.028 4.028 28 C -0.118 4.118 29 C -0.088 4.088 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.033 0.967 37 H 0.254 0.746 38 H 0.101 0.899 39 H 0.027 0.973 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.396 0.604 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.168 0.832 46 H 0.116 0.884 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.073 0.927 50 H 0.064 0.936 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 -10.160 -17.865 20.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.387 4.387 6 H 0.080 0.920 7 C -0.189 4.189 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.202 1.202 13 C 0.008 3.992 14 C -0.026 4.026 15 N -0.376 5.376 16 C 0.291 3.709 17 O -0.413 6.413 18 C -0.113 4.113 19 C -0.149 4.149 20 C -0.070 4.070 21 N -0.198 5.198 22 H 0.250 0.750 23 C -0.008 4.008 24 C -0.161 4.161 25 C -0.116 4.116 26 C -0.174 4.174 27 C -0.029 4.029 28 C -0.175 4.175 29 C -0.093 4.093 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.119 0.881 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.229 0.771 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.186 0.814 46 H 0.134 0.866 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.092 0.908 50 H 0.083 0.917 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.978 -10.852 -17.437 20.561 hybrid contribution 1.241 -0.386 0.574 1.421 sum 2.219 -11.237 -16.862 20.385 Atomic orbital electron populations 1.21720 0.97342 1.00399 1.00979 1.22205 0.93812 1.00945 1.01602 1.20930 0.85040 0.92964 0.98932 1.43646 0.99457 1.85016 1.01893 1.19059 1.03662 1.24001 0.91993 0.91972 1.25090 1.00688 0.94852 0.98266 1.70003 1.24201 1.17178 1.41574 0.86402 0.81716 0.77876 0.81507 1.21310 1.21760 1.20206 1.21095 1.00456 0.91303 0.86355 1.22382 0.94791 1.02441 0.82969 1.46149 1.58371 1.08158 1.24947 1.20549 0.79988 0.84371 0.86014 1.90698 1.54339 1.28830 1.67455 1.20129 1.01675 0.94159 0.95339 1.19535 0.93614 0.96197 1.05588 1.21528 1.00179 0.84918 1.00330 1.41631 1.13622 1.15082 1.49452 0.74957 1.18201 0.86343 0.96556 0.99742 1.19936 0.95906 0.97599 1.02699 1.20720 0.93790 0.97301 0.99814 1.20484 1.00198 0.93920 1.02830 1.19073 0.92008 0.96192 0.95602 1.20906 0.99788 0.94378 1.02383 1.18809 0.94199 0.93890 1.02371 0.93234 0.93449 0.93821 0.92867 0.92419 0.93495 0.94830 0.93570 0.88125 0.95424 0.93192 0.92083 0.77123 0.88480 0.88239 0.81444 0.86615 0.86031 0.86261 0.90800 0.91726 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.15 -2.70 6.25 -26.73 -0.17 -2.86 16 3 C 0.15 3.07 5.71 -4.04 -0.02 3.05 16 4 N -0.58 -14.00 2.45 -173.24 -0.42 -14.42 16 5 C -0.26 -6.89 9.48 -15.06 -0.14 -7.03 16 6 H 0.06 1.69 7.93 -52.48 -0.42 1.27 16 7 C 0.01 0.30 4.93 -17.43 -0.09 0.21 16 8 N -0.89 -24.51 11.40 55.49 0.63 -23.88 16 9 Si 0.90 21.40 29.61 -169.99 -5.03 16.37 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.14 2.98 5.45 -4.04 -0.02 2.96 16 14 C 0.10 2.03 6.00 -4.04 -0.02 2.00 16 15 N -0.72 -11.93 5.56 -60.29 -0.33 -12.26 16 16 C 0.51 8.38 7.82 -10.99 -0.09 8.29 16 17 O -0.54 -11.32 16.03 5.55 0.09 -11.23 16 18 C -0.07 -0.88 5.58 -29.04 -0.16 -1.05 16 19 C -0.14 -1.90 4.81 -102.71 -0.49 -2.40 16 20 C 0.06 0.65 11.73 -16.73 -0.20 0.45 16 21 N -0.60 -6.33 6.07 -10.65 -0.06 -6.40 16 22 H 0.41 2.97 8.96 -40.82 -0.37 2.61 16 23 C 0.10 1.27 7.28 -83.99 -0.61 0.65 16 24 C -0.14 -1.57 10.08 -39.43 -0.40 -1.97 16 25 C -0.10 -1.04 10.01 -39.54 -0.40 -1.44 16 26 C -0.16 -1.82 9.60 -39.94 -0.38 -2.20 16 27 C -0.03 -0.38 5.87 -104.68 -0.61 -0.99 16 28 C -0.12 -1.39 9.56 36.01 0.34 -1.05 16 29 C -0.09 -1.26 6.15 -105.14 -0.65 -1.90 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 1.02 6.45 -51.93 -0.33 0.68 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.05 1.00 8.06 -51.93 -0.42 0.58 16 36 H 0.03 0.65 7.86 -51.93 -0.41 0.25 16 37 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.10 2.49 5.40 -51.93 -0.28 2.21 16 39 H 0.03 0.57 7.87 -51.93 -0.41 0.16 16 40 H 0.05 1.05 6.45 -51.93 -0.33 0.72 16 41 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.40 5.39 8.47 -40.82 -0.35 5.04 16 43 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.10 1.02 5.70 -51.93 -0.30 0.73 16 45 H 0.17 1.43 8.06 -52.48 -0.42 1.01 16 46 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 48 H 0.12 1.15 8.05 -52.49 -0.42 0.72 16 49 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.06 0.62 8.04 -51.93 -0.42 0.20 16 51 H 0.07 0.74 5.41 -51.93 -0.28 0.46 16 LS Contribution 412.80 15.07 6.22 6.22 Total: -1.00 -33.45 412.80 -10.75 -44.20 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -8.09 Total: 8.51 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.74 Total: -7.11 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.19 Total: -56.96 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.45 -10.75 -44.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317547846.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.390 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds