Wall clock time and date at job start Wed Apr 1 2020 02:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47364 * 2 1 4 4 N 1.46501 * 109.47639 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99604 * 272.73528 * 4 3 2 6 6 H 1.08004 * 120.00492 * 34.97644 * 5 4 3 7 7 C 1.38817 * 119.99926 * 214.97970 * 5 4 3 8 8 N 1.31620 * 119.99821 * 23.25028 * 7 5 4 9 9 Si 1.86799 * 120.00140 * 203.25552 * 7 5 4 10 10 H 1.48498 * 109.47001 * 89.99529 * 9 7 5 11 11 H 1.48501 * 109.47155 * 209.99678 * 9 7 5 12 12 H 1.48501 * 109.47001 * 329.99971 * 9 7 5 13 13 C 1.46497 * 120.00425 * 92.72779 * 4 3 2 14 14 C 1.53003 * 109.47157 * 270.00800 * 13 4 3 15 15 N 1.46499 * 109.46804 * 180.02562 * 14 13 4 16 16 C 1.34779 * 119.99969 * 179.97438 * 15 14 13 17 17 O 1.21290 * 119.99934 * 359.97438 * 16 15 14 18 18 C 1.50694 * 120.00364 * 179.97438 * 16 15 14 19 19 C 1.50697 * 109.47285 * 180.02562 * 18 16 15 20 20 C 1.34237 * 126.50413 * 262.82896 * 19 18 16 21 21 N 1.36839 * 109.93419 * 179.47810 * 20 19 18 22 22 H 0.96993 * 125.06435 * 179.97438 * 21 20 19 23 23 C 1.37687 * 109.86612 * 0.65191 * 21 20 19 24 24 C 1.39124 * 133.50494 * 179.27688 * 23 21 20 25 25 C 1.37750 * 119.77939 * 179.97438 * 24 23 21 26 26 C 1.38835 * 120.66619 * 0.02562 * 25 24 23 27 27 C 1.36621 * 120.52390 * 359.97438 * 26 25 24 28 28 C 1.50709 * 120.11381 * 180.02562 * 27 26 25 29 29 C 1.39624 * 119.76850 * 0.27492 * 27 26 25 30 30 H 1.09004 * 109.46830 * 300.00101 * 1 2 3 31 31 H 1.09000 * 109.47014 * 59.99852 * 1 2 3 32 32 H 1.08994 * 109.46964 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46830 * 239.99899 * 2 1 3 34 34 H 1.08997 * 109.47302 * 119.99704 * 2 1 3 35 35 H 1.09004 * 109.47294 * 59.99591 * 3 2 1 36 36 H 1.09000 * 109.47176 * 300.00049 * 3 2 1 37 37 H 0.97003 * 119.99998 * 179.97438 * 8 7 5 38 38 H 1.08999 * 109.47340 * 150.00368 * 13 4 3 39 39 H 1.09000 * 109.47095 * 30.00445 * 13 4 3 40 40 H 1.08999 * 109.47348 * 59.99574 * 14 13 4 41 41 H 1.08998 * 109.46433 * 299.99458 * 14 13 4 42 42 H 0.97001 * 120.00607 * 359.97438 * 15 14 13 43 43 H 1.08999 * 109.47150 * 59.99961 * 18 16 15 44 44 H 1.09000 * 109.47242 * 300.00064 * 18 16 15 45 45 H 1.08011 * 125.03110 * 0.02562 * 20 19 18 46 46 H 1.07998 * 120.11322 * 0.02562 * 24 23 21 47 47 H 1.07999 * 119.66702 * 180.02562 * 25 24 23 48 48 H 1.07997 * 119.73575 * 180.02562 * 26 25 24 49 49 H 1.09003 * 109.46979 * 95.91092 * 28 27 26 50 50 H 1.08994 * 109.47361 * 335.91496 * 28 27 26 51 51 H 1.09001 * 109.46914 * 215.91348 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.3858 1.1837 6 1 3.7968 0.8095 2.0081 7 6 5.3903 2.0690 1.3247 8 7 5.6535 3.1027 0.5537 9 14 6.6316 1.5214 2.6086 10 1 7.5556 0.5246 2.0103 11 1 7.4083 2.6964 3.0792 12 1 5.9178 0.9076 3.7571 13 6 4.2371 1.5031 -1.2681 14 6 4.4918 0.0833 -1.7784 15 7 5.2244 0.1440 -3.0456 16 6 5.5616 -0.9940 -3.6842 17 8 5.2590 -2.0683 -3.2095 18 6 6.3147 -0.9316 -4.9880 19 6 6.5657 -2.3300 -5.4905 20 6 7.6895 -3.0465 -5.3301 21 7 7.5454 -4.2767 -5.9117 22 1 8.2241 -4.9695 -5.9256 23 6 6.2988 -4.3790 -6.4874 24 6 5.6535 -5.3830 -7.2023 25 6 4.3700 -5.1805 -7.6595 26 6 3.7118 -3.9828 -7.4148 27 6 4.3268 -2.9836 -6.7149 28 6 3.6035 -1.6874 -6.4540 29 6 5.6295 -3.1654 -6.2466 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 6.4920 3.5804 0.6524 38 1 5.1896 2.0101 -1.1138 39 1 3.6478 2.0527 -2.0021 40 1 3.5393 -0.4237 -1.9327 41 1 5.0812 -0.4661 -1.0443 42 1 5.4668 1.0032 -3.4251 43 1 7.2669 -0.4242 -4.8337 44 1 5.7252 -0.3825 -5.7222 45 1 8.5731 -2.7059 -4.8106 46 1 6.1569 -6.3184 -7.3975 47 1 3.8706 -5.9613 -8.2139 48 1 2.7055 -3.8403 -7.7799 49 1 3.1426 -1.7208 -5.4668 50 1 2.8321 -1.5431 -7.2103 51 1 4.3127 -0.8607 -6.4961 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317547846.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:21 Heat of formation + Delta-G solvation = 6.834538 kcal Electronic energy + Delta-G solvation = -29916.154578 eV Core-core repulsion = 26008.060217 eV Total energy + Delta-G solvation = -3908.094361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.24721 -40.41370 -38.24325 -38.02638 -35.62236 -34.62872 -34.59722 -32.68386 -32.21153 -30.33293 -29.95815 -28.57229 -27.34198 -26.86363 -24.99615 -22.99649 -22.79733 -22.65278 -21.98777 -21.56825 -20.05250 -18.75993 -18.34052 -17.75395 -17.32747 -16.98851 -16.71778 -16.37992 -16.19656 -15.84522 -15.69196 -15.46808 -15.25516 -14.78942 -14.49426 -14.45741 -14.27733 -14.21346 -14.14008 -13.70351 -13.53390 -13.34461 -13.09906 -12.97076 -12.90793 -12.87497 -12.63046 -12.52035 -12.22189 -12.18607 -12.04004 -11.99123 -11.87471 -11.65611 -11.58073 -11.33223 -10.87282 -10.52307 -10.30029 -9.91897 -9.09851 -8.62102 -8.44600 -7.85470 -5.44528 0.23499 0.74567 1.43231 1.47428 1.54152 1.65949 1.81329 2.29124 2.42956 2.56695 2.98728 3.21595 3.76204 3.79912 3.90346 4.02090 4.13094 4.17499 4.24173 4.29475 4.36274 4.41292 4.41854 4.51543 4.58417 4.61277 4.64942 4.69922 4.75748 4.81529 4.84715 4.86817 4.93233 4.99298 5.04419 5.17197 5.21116 5.24458 5.27603 5.31141 5.42752 5.52555 5.60572 5.62385 5.67241 5.76155 5.78711 5.81240 5.89317 6.29816 6.44239 6.74589 6.76949 7.14796 7.44548 7.84164 8.34754 9.10405 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.002764 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.545126 B =10127.452388 C =11534.074137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.598 5.598 5 C -0.269 4.269 6 H 0.051 0.949 7 C -0.029 4.029 8 N -0.908 5.908 9 Si 0.949 3.051 10 H -0.290 1.290 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.144 3.856 14 C 0.123 3.877 15 N -0.717 5.717 16 C 0.507 3.493 17 O -0.585 6.585 18 C -0.060 4.060 19 C -0.177 4.177 20 C 0.062 3.938 21 N -0.586 5.586 22 H 0.429 0.571 23 C 0.076 3.924 24 C -0.144 4.144 25 C -0.103 4.103 26 C -0.162 4.162 27 C -0.058 4.058 28 C -0.113 4.113 29 C -0.119 4.119 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.049 0.951 37 H 0.254 0.746 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.022 0.978 42 H 0.412 0.588 43 H 0.128 0.872 44 H 0.119 0.881 45 H 0.196 0.804 46 H 0.141 0.859 47 H 0.150 0.850 48 H 0.137 0.863 49 H 0.048 0.952 50 H 0.083 0.917 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.162 -10.800 -19.393 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.319 5.319 5 C -0.399 4.399 6 H 0.068 0.932 7 C -0.227 4.227 8 N -0.552 5.552 9 Si 0.777 3.223 10 H -0.217 1.217 11 H -0.214 1.214 12 H -0.199 1.199 13 C 0.017 3.983 14 C -0.003 4.003 15 N -0.370 5.370 16 C 0.295 3.705 17 O -0.465 6.465 18 C -0.100 4.100 19 C -0.185 4.185 20 C -0.065 4.065 21 N -0.190 5.190 22 H 0.268 0.732 23 C -0.031 4.031 24 C -0.165 4.165 25 C -0.122 4.122 26 C -0.181 4.181 27 C -0.058 4.058 28 C -0.169 4.169 29 C -0.123 4.123 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.041 0.959 42 H 0.248 0.752 43 H 0.146 0.854 44 H 0.137 0.863 45 H 0.213 0.787 46 H 0.159 0.841 47 H 0.168 0.832 48 H 0.154 0.846 49 H 0.067 0.933 50 H 0.102 0.898 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.170 -11.488 -18.993 22.228 hybrid contribution 1.151 -0.250 1.008 1.550 sum 2.320 -11.738 -17.985 21.601 Atomic orbital electron populations 1.21652 0.94186 1.01729 1.02076 1.22029 0.96487 0.98864 1.00101 1.21041 0.83363 0.94411 0.99157 1.43885 1.00887 1.85278 1.01800 1.19167 1.04376 1.23606 0.92738 0.93171 1.25641 1.01861 0.95023 1.00150 1.70082 1.24445 1.17823 1.42804 0.85569 0.79703 0.77290 0.79722 1.21713 1.21398 1.19880 1.20963 0.99412 0.91879 0.86088 1.21812 0.94067 1.00628 0.83831 1.46000 1.57960 1.09399 1.23619 1.21370 0.79065 0.83187 0.86924 1.90673 1.56228 1.30599 1.68969 1.20114 1.02578 0.94633 0.92658 1.19777 0.94494 0.97070 1.07126 1.22027 1.00580 0.84757 0.99165 1.41663 1.13426 1.15305 1.48623 0.73161 1.18541 0.87195 0.96821 1.00562 1.20318 0.96168 0.98166 1.01841 1.21118 0.93827 0.97659 0.99622 1.20822 1.01010 0.93998 1.02264 1.19365 0.92388 0.97255 0.96806 1.20856 1.00228 0.94346 1.01460 1.19210 0.94993 0.94972 1.03166 0.92497 0.91988 0.92404 0.93796 0.94485 0.94404 0.93288 0.93646 0.90391 0.93783 0.94007 0.95921 0.75216 0.85449 0.86337 0.78675 0.84128 0.83194 0.84557 0.93328 0.89830 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.91 71.98 0.71 -3.21 16 2 C -0.13 -5.00 6.25 30.59 0.19 -4.80 16 3 C 0.15 6.06 5.71 86.38 0.49 6.55 16 4 N -0.60 -29.31 2.45 -701.99 -1.72 -31.03 16 5 C -0.27 -14.67 9.48 84.03 0.80 -13.87 16 6 H 0.05 2.80 7.93 -2.91 -0.02 2.78 16 7 C -0.03 -1.56 4.93 84.86 0.42 -1.15 16 8 N -0.91 -50.61 11.40 21.65 0.25 -50.36 16 9 Si 0.95 44.50 29.61 68.60 2.03 46.53 16 10 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 C 0.14 6.40 5.45 86.38 0.47 6.87 16 14 C 0.12 5.15 6.00 86.38 0.52 5.67 16 15 N -0.72 -23.55 5.56 -463.05 -2.57 -26.13 16 16 C 0.51 16.76 7.82 87.65 0.69 17.44 16 17 O -0.58 -25.29 16.03 -3.06 -0.05 -25.33 16 18 C -0.06 -1.38 5.58 29.10 0.16 -1.22 16 19 C -0.18 -4.60 4.81 -18.63 -0.09 -4.69 16 20 C 0.06 1.32 11.73 83.00 0.97 2.29 16 21 N -0.59 -11.65 6.07 -187.60 -1.14 -12.79 16 22 H 0.43 5.41 8.96 -92.71 -0.83 4.58 16 23 C 0.08 1.88 7.28 39.03 0.28 2.17 16 24 C -0.14 -2.99 10.08 22.37 0.23 -2.77 16 25 C -0.10 -2.04 10.01 22.30 0.22 -1.82 16 26 C -0.16 -3.65 9.60 22.03 0.21 -3.44 16 27 C -0.06 -1.53 5.87 -19.91 -0.12 -1.64 16 28 C -0.11 -2.64 9.56 71.24 0.68 -1.96 16 29 C -0.12 -3.35 6.15 -20.20 -0.12 -3.47 16 30 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.04 1.69 6.45 -2.38 -0.02 1.68 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 35 H 0.04 1.62 8.06 -2.38 -0.02 1.60 16 36 H 0.05 1.87 7.86 -2.39 -0.02 1.85 16 37 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 38 H 0.08 3.91 5.40 -2.39 -0.01 3.90 16 39 H 0.04 1.79 7.87 -2.39 -0.02 1.77 16 40 H 0.04 1.81 6.45 -2.39 -0.02 1.79 16 41 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.41 10.85 8.47 -92.71 -0.79 10.06 16 43 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.12 2.25 5.70 -2.39 -0.01 2.24 16 45 H 0.20 2.85 8.06 -2.90 -0.02 2.83 16 46 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 47 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 48 H 0.14 2.43 8.05 -2.91 -0.02 2.41 16 49 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.08 1.54 8.04 -2.39 -0.02 1.52 16 51 H 0.07 1.57 5.41 -2.39 -0.01 1.56 16 Total: -1.00 -74.45 412.80 2.85 -71.59 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -0.67 Total: 30.57 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 6.72 Total: -3.06 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -5.18 Total: -120.30 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.05 Total: -25.33 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -74.45 2.85 -71.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317547846.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.429 kcal (2) G-P(sol) polarization free energy of solvation -74.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds