Wall clock time and date at job start Wed Apr 1 2020 02:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47043 * 2 1 4 4 N 1.46502 * 109.47052 * 180.02562 * 3 2 1 5 5 C 1.34771 * 120.00303 * 86.20964 * 4 3 2 6 6 O 1.21287 * 120.00355 * 185.06262 * 5 4 3 7 7 C 1.50704 * 119.99851 * 5.06226 * 5 4 3 8 8 H 1.08999 * 110.33837 * 332.61322 * 7 5 4 9 9 C 1.54336 * 110.29287 * 210.50885 * 7 5 4 10 10 C 1.54372 * 102.57037 * 214.81896 * 9 7 5 11 11 C 1.51227 * 105.11741 * 26.18756 * 10 9 7 12 12 C 1.38743 * 130.69510 * 162.91435 * 11 10 9 13 13 C 1.38577 * 118.55769 * 180.02562 * 12 11 10 14 14 C 1.38230 * 118.99205 * 359.89749 * 13 12 11 15 15 N 1.31686 * 120.79731 * 0.06679 * 14 13 12 16 16 C 1.32299 * 122.03243 * 359.97301 * 15 14 13 17 17 C 1.46501 * 119.99941 * 266.20994 * 4 3 2 18 18 H 1.09003 * 110.64279 * 359.29567 * 17 4 3 19 19 C 1.55148 * 110.72131 * 122.43987 * 17 4 3 20 20 C 1.55127 * 101.48880 * 153.73571 * 19 17 4 21 21 N 1.47431 * 104.94020 * 323.22211 * 20 19 17 22 22 C 1.36933 * 125.64538 * 203.96720 * 21 20 19 23 23 H 1.08001 * 119.99485 * 166.41316 * 22 21 20 24 24 C 1.38812 * 120.00301 * 346.41268 * 22 21 20 25 25 N 1.31611 * 119.99865 * 350.79609 * 24 22 21 26 26 Si 1.86799 * 119.99926 * 170.79574 * 24 22 21 27 27 H 1.48502 * 109.46898 * 94.93611 * 26 24 22 28 28 H 1.48491 * 109.47213 * 214.93608 * 26 24 22 29 29 H 1.48497 * 109.47164 * 334.94020 * 26 24 22 30 30 C 1.47026 * 108.70097 * 24.00479 * 21 20 19 31 31 H 1.09001 * 109.47190 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47045 * 299.99696 * 1 2 3 33 33 H 1.08997 * 109.47340 * 59.99749 * 1 2 3 34 34 H 1.09003 * 109.46930 * 239.99889 * 2 1 3 35 35 H 1.08997 * 109.47340 * 120.00251 * 2 1 3 36 36 H 1.09001 * 109.47537 * 60.00658 * 3 2 1 37 37 H 1.09005 * 109.47259 * 299.99964 * 3 2 1 38 38 H 1.09003 * 110.82365 * 96.50090 * 9 7 5 39 39 H 1.08996 * 110.82641 * 333.14279 * 9 7 5 40 40 H 1.08998 * 110.31367 * 145.09935 * 10 9 7 41 41 H 1.09001 * 110.31473 * 267.18165 * 10 9 7 42 42 H 1.08002 * 120.72350 * 359.97438 * 12 11 10 43 43 H 1.07998 * 120.50339 * 179.97438 * 13 12 11 44 44 H 1.08001 * 119.59941 * 180.02562 * 14 13 12 45 45 H 1.09000 * 111.00805 * 271.93652 * 19 17 4 46 46 H 1.08997 * 111.00608 * 35.79102 * 19 17 4 47 47 H 1.08999 * 110.42123 * 204.29574 * 20 19 17 48 48 H 1.09001 * 110.20740 * 82.04279 * 20 19 17 49 49 H 0.97003 * 119.99902 * 180.02562 * 25 24 22 50 50 H 1.09005 * 109.87776 * 239.52620 * 30 21 20 51 51 H 1.08993 * 110.01145 * 118.43377 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1784 1.3655 -1.1655 6 8 5.3878 1.2728 -1.1619 7 6 3.4288 1.3945 -2.4725 8 1 2.4203 1.0030 -2.3396 9 6 4.1841 0.5761 -3.5410 10 6 3.9028 1.3710 -4.8341 11 6 3.6493 2.7902 -4.3773 12 6 3.6547 3.9832 -5.0856 13 6 3.3847 5.1593 -4.4044 14 6 3.1183 5.1026 -3.0492 15 7 3.1209 3.9518 -2.4091 16 6 3.3747 2.8078 -3.0233 17 6 4.2380 1.5261 1.2651 18 1 3.5472 1.5942 2.1055 19 6 5.1867 0.3098 1.4314 20 6 6.2811 0.8965 2.3612 21 7 6.4452 2.2938 1.9206 22 6 7.5649 3.0611 2.1008 23 1 7.6768 3.9886 1.5590 24 6 8.5562 2.6468 2.9799 25 7 8.3446 1.6178 3.7726 26 14 10.1903 3.5499 3.0377 27 1 10.1538 4.5709 4.1155 28 1 11.2820 2.5810 3.3105 29 1 10.4342 4.2160 1.7330 30 6 5.2072 2.7271 1.2564 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.6768 1.9563 0.8900 37 1 1.6766 1.9563 -0.8900 38 1 3.7810 -0.4342 -3.6120 39 1 5.2524 0.5510 -3.3264 40 1 4.7680 1.3354 -5.4960 41 1 3.0235 0.9720 -5.3398 42 1 3.8658 3.9951 -6.1447 43 1 3.3811 6.1057 -4.9246 44 1 2.9061 6.0132 -2.5087 45 1 4.6721 -0.5249 1.9075 46 1 5.6098 0.0102 0.4727 47 1 7.2158 0.3486 2.2413 48 1 5.9510 0.8624 3.3995 49 1 9.0371 1.3286 4.3872 50 1 5.4215 3.0230 0.2294 51 1 4.7661 3.5634 1.7986 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317764394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:31 Heat of formation + Delta-G solvation = 32.045328 kcal Electronic energy + Delta-G solvation = -31576.684097 eV Core-core repulsion = 27669.682958 eV Total energy + Delta-G solvation = -3907.001139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.17722 -39.66628 -37.02723 -35.87482 -35.78889 -32.95250 -32.80386 -31.66370 -29.57066 -29.14917 -28.41043 -27.13591 -25.79696 -24.34126 -23.64620 -22.60498 -21.80488 -21.53082 -20.29078 -20.02625 -18.50384 -17.10069 -16.99674 -16.58018 -16.47541 -15.63357 -15.38591 -15.06714 -14.60363 -14.49050 -14.33734 -13.89485 -13.68951 -13.63500 -13.51723 -13.25215 -12.96234 -12.87637 -12.39524 -12.26136 -12.16857 -11.95978 -11.83640 -11.70985 -11.60501 -11.49465 -11.31184 -11.07171 -10.84444 -10.74619 -10.70742 -10.64396 -10.35283 -9.94254 -9.89454 -9.77066 -9.53397 -9.41081 -9.12190 -8.73140 -8.42614 -8.14996 -6.56103 -5.59082 -2.89943 0.93687 1.15206 2.89203 3.23768 3.49484 3.54676 3.58443 3.66142 3.81920 4.26365 4.48843 4.64530 4.68776 4.72690 4.77577 4.82084 4.91675 5.01311 5.06570 5.15876 5.21943 5.28760 5.35178 5.41862 5.54360 5.56444 5.58178 5.60360 5.65092 5.67169 5.75093 5.78084 5.87323 5.91718 5.95759 5.97310 6.02921 6.05861 6.10717 6.19392 6.41753 6.54376 6.67514 6.72525 6.77908 6.93751 7.35763 7.66569 7.71649 7.82273 7.89467 7.93576 8.43928 8.59287 9.36737 9.98932 10.68907 11.54862 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010301 B = 0.003841 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.494635 B = 7287.115344 C = 8803.292649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.110 3.890 4 N -0.597 5.597 5 C 0.526 3.474 6 O -0.506 6.506 7 C -0.063 4.063 8 H 0.110 0.890 9 C -0.110 4.110 10 C -0.076 4.076 11 C -0.143 4.143 12 C -0.066 4.066 13 C -0.173 4.173 14 C 0.105 3.895 15 N -0.467 5.467 16 C 0.135 3.865 17 C 0.138 3.862 18 H 0.087 0.913 19 C -0.157 4.157 20 C 0.182 3.818 21 N -0.594 5.594 22 C -0.217 4.217 23 H 0.071 0.929 24 C -0.009 4.009 25 N -0.920 5.920 26 Si 0.908 3.092 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.281 1.281 30 C 0.136 3.864 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.132 0.868 43 H 0.137 0.863 44 H 0.158 0.842 45 H 0.052 0.948 46 H 0.082 0.918 47 H 0.061 0.939 48 H 0.026 0.974 49 H 0.250 0.750 50 H 0.035 0.965 51 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.984 -1.383 -17.735 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.014 4.014 4 N -0.328 5.328 5 C 0.312 3.688 6 O -0.380 6.380 7 C -0.086 4.086 8 H 0.128 0.872 9 C -0.148 4.148 10 C -0.114 4.114 11 C -0.145 4.145 12 C -0.092 4.092 13 C -0.192 4.192 14 C -0.052 4.052 15 N -0.175 5.175 16 C -0.003 4.003 17 C 0.035 3.965 18 H 0.105 0.895 19 C -0.197 4.197 20 C 0.056 3.944 21 N -0.320 5.320 22 C -0.346 4.346 23 H 0.088 0.912 24 C -0.205 4.205 25 N -0.567 5.567 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 C 0.010 3.990 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.150 0.850 43 H 0.154 0.846 44 H 0.175 0.825 45 H 0.071 0.929 46 H 0.100 0.900 47 H 0.079 0.921 48 H 0.044 0.956 49 H 0.061 0.939 50 H 0.053 0.947 51 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -18.307 -1.422 -16.699 24.820 hybrid contribution 0.857 0.730 -0.718 1.335 sum -17.450 -0.692 -17.418 24.664 Atomic orbital electron populations 1.21701 0.95295 1.01785 1.01896 1.22042 0.95895 0.97558 1.02923 1.21636 0.80063 0.96279 1.03375 1.47851 1.05921 1.72848 1.06206 1.19913 0.87810 0.76694 0.84381 1.90783 1.13511 1.47219 1.86523 1.20998 1.01526 0.91220 0.94813 0.87219 1.22371 1.02888 0.97905 0.91599 1.20968 1.02342 0.89896 0.98164 1.21412 1.00944 0.96306 0.95847 1.21034 0.96847 0.91095 1.00232 1.22087 1.01937 0.98959 0.96264 1.22660 0.95566 0.95317 0.91705 1.66852 1.12596 0.97692 1.40374 1.21315 0.95345 0.92759 0.90921 1.22144 0.93234 0.97798 0.83345 0.89505 1.23458 0.98128 0.95680 1.02407 1.21275 0.95078 0.84824 0.93206 1.44230 1.10679 1.09775 1.67306 1.18975 0.94335 1.02986 1.18324 0.91150 1.24795 0.99193 0.98981 0.97514 1.69956 1.33033 1.28468 1.25292 0.86158 0.83873 0.78605 0.77528 1.21748 1.21697 1.20702 1.21449 0.87439 0.93276 0.96867 0.92559 0.92464 0.92792 0.91951 0.91148 0.90229 0.90558 0.89649 0.88420 0.89963 0.89792 0.85000 0.84563 0.82494 0.92887 0.89984 0.92088 0.95636 0.93939 0.94711 0.96673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.15 -1.40 6.05 -26.73 -0.16 -1.56 16 3 C 0.11 1.28 5.02 -4.04 -0.02 1.26 16 4 N -0.60 -9.51 2.54 -164.03 -0.42 -9.93 16 5 C 0.53 8.99 5.84 -10.99 -0.06 8.93 16 6 O -0.51 -11.05 12.17 5.55 0.07 -10.98 16 7 C -0.06 -0.82 2.42 -91.69 -0.22 -1.04 16 8 H 0.11 1.14 5.57 -51.93 -0.29 0.85 16 9 C -0.11 -1.20 6.52 -25.31 -0.17 -1.36 16 10 C -0.08 -0.69 6.77 -26.91 -0.18 -0.87 16 11 C -0.14 -1.64 6.16 -104.20 -0.64 -2.28 16 12 C -0.07 -0.65 10.17 -39.27 -0.40 -1.05 16 13 C -0.17 -1.66 10.12 -39.46 -0.40 -2.06 16 14 C 0.11 1.23 11.18 -17.62 -0.20 1.03 16 15 N -0.47 -6.81 10.34 -9.09 -0.09 -6.90 16 16 C 0.13 1.85 6.62 -81.88 -0.54 1.30 16 17 C 0.14 2.66 3.43 -66.10 -0.23 2.43 16 18 H 0.09 1.52 7.82 -51.93 -0.41 1.12 16 19 C -0.16 -3.32 6.43 -24.47 -0.16 -3.48 16 20 C 0.18 4.78 5.38 -2.41 -0.01 4.77 16 21 N -0.59 -16.78 3.39 -169.93 -0.58 -17.36 16 22 C -0.22 -6.63 10.22 -15.06 -0.15 -6.79 16 23 H 0.07 2.12 7.85 -52.49 -0.41 1.71 16 24 C -0.01 -0.26 5.39 -17.43 -0.09 -0.36 16 25 N -0.92 -28.55 10.82 55.49 0.60 -27.95 16 26 Si 0.91 23.54 29.56 -169.99 -5.03 18.51 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 29 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 30 C 0.14 3.29 6.50 -3.06 -0.02 3.27 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.59 7.46 -51.93 -0.39 0.20 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.89 7.87 -51.93 -0.41 0.48 16 37 H 0.08 0.85 6.45 -51.93 -0.34 0.51 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 1.34 6.98 -51.93 -0.36 0.98 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.16 1.46 8.06 -52.49 -0.42 1.03 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.08 1.86 5.86 -51.93 -0.30 1.56 16 47 H 0.06 1.78 7.18 -51.93 -0.37 1.41 16 48 H 0.03 0.71 8.00 -51.93 -0.42 0.29 16 49 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 50 H 0.03 0.91 6.23 -51.93 -0.32 0.59 16 51 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 397.30 15.07 5.99 5.99 Total: -1.00 -36.90 397.30 -10.97 -47.87 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.22 Total: -0.66 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -3.29 Total: 1.40 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.49 Total: -62.14 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.07 Total: -10.98 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.03 Total: 18.51 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.90 -10.97 -47.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317764394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.920 kcal (2) G-P(sol) polarization free energy of solvation -36.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds