Wall clock time and date at job start Wed Apr 1 2020 02:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47256 * 2 1 4 4 N 1.46506 * 109.47223 * 184.96699 * 3 2 1 5 5 C 1.34775 * 119.99738 * 93.82716 * 4 3 2 6 6 O 1.21280 * 119.99730 * 180.02562 * 5 4 3 7 7 C 1.50699 * 120.00300 * 359.97438 * 5 4 3 8 8 H 1.09004 * 115.55746 * 34.31689 * 7 5 4 9 9 C 1.53069 * 117.49975 * 248.60245 * 7 5 4 10 10 C 1.52993 * 59.98517 * 252.51544 * 9 7 5 11 11 H 1.08999 * 117.49707 * 107.50410 * 10 9 7 12 12 C 1.50699 * 117.50063 * 252.49586 * 10 9 7 13 13 C 1.38669 * 120.42378 * 188.74924 * 12 10 9 14 14 C 1.38623 * 118.42531 * 179.97438 * 13 12 10 15 15 C 1.38230 * 119.16115 * 0.02562 * 14 13 12 16 16 N 1.31852 * 120.76077 * 0.25086 * 15 14 13 17 17 C 1.31882 * 121.72936 * 359.48026 * 16 15 14 18 18 C 1.46500 * 120.00075 * 273.82675 * 4 3 2 19 19 H 1.08999 * 110.63554 * 359.79855 * 18 4 3 20 20 C 1.55157 * 110.71651 * 123.13262 * 18 4 3 21 21 C 1.54907 * 101.57865 * 153.86855 * 20 18 4 22 22 N 1.47427 * 104.83194 * 322.98506 * 21 20 18 23 23 C 1.36935 * 125.65063 * 204.09186 * 22 21 20 24 24 H 1.08002 * 119.99837 * 180.02562 * 23 22 21 25 25 C 1.38817 * 120.00010 * 0.04373 * 23 22 21 26 26 N 1.31621 * 119.99730 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00083 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47047 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.46919 * 120.00456 * 27 25 23 30 30 H 1.48500 * 109.47155 * 240.00562 * 27 25 23 31 31 C 1.47017 * 108.70110 * 24.13475 * 22 21 20 32 32 H 1.09000 * 109.46775 * 300.00187 * 1 2 3 33 33 H 1.09004 * 109.46805 * 59.99893 * 1 2 3 34 34 H 1.08999 * 109.47184 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.46775 * 239.99813 * 2 1 3 36 36 H 1.09004 * 109.46805 * 120.00107 * 2 1 3 37 37 H 1.08997 * 109.47135 * 64.96753 * 3 2 1 38 38 H 1.09006 * 109.47238 * 304.96759 * 3 2 1 39 39 H 1.09004 * 117.51063 * 145.03187 * 9 7 5 40 40 H 1.09005 * 117.51301 * 359.97438 * 9 7 5 41 41 H 1.08006 * 120.78729 * 359.97438 * 13 12 10 42 42 H 1.07998 * 120.42380 * 180.02562 * 14 13 12 43 43 H 1.07997 * 119.61908 * 179.97438 * 15 14 13 44 44 H 1.07998 * 119.62197 * 180.26965 * 17 16 15 45 45 H 1.09001 * 111.00259 * 271.93510 * 20 18 4 46 46 H 1.08999 * 111.00792 * 35.79054 * 20 18 4 47 47 H 1.09002 * 110.36459 * 204.15180 * 21 20 18 48 48 H 1.09004 * 110.37372 * 81.82597 * 21 20 18 49 49 H 0.97003 * 119.99889 * 180.02562 * 26 25 23 50 50 H 1.09008 * 109.88075 * 239.52206 * 31 22 21 51 51 H 1.08996 * 109.88942 * 118.35581 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5002 1.4441 -0.1196 5 6 4.0768 1.5564 -1.3326 6 8 5.2855 1.5574 -1.4316 7 6 3.2196 1.6796 -2.5659 8 1 2.2876 2.2301 -2.4378 9 6 3.2171 0.5033 -3.5453 10 6 3.9339 1.8039 -3.9132 11 1 5.0239 1.7967 -3.9075 12 6 3.2952 2.6779 -4.9615 13 6 3.9753 3.7733 -5.4720 14 6 3.3487 4.5488 -6.4352 15 6 2.0757 4.2071 -6.8516 16 7 1.4568 3.1612 -6.3400 17 6 2.0241 2.3983 -5.4260 18 6 4.3335 1.3238 1.0793 19 1 3.7131 1.2461 1.9721 20 6 5.2900 0.1077 0.9631 21 6 6.4553 0.5392 1.8880 22 7 6.5901 1.9914 1.6728 23 6 7.7244 2.7281 1.8868 24 1 7.7211 3.7916 1.6986 25 6 8.8787 2.1079 2.3451 26 7 8.8829 0.8116 2.5735 27 14 10.4263 3.1126 2.6363 28 1 10.1616 4.5362 2.3063 29 1 10.8275 3.0017 4.0617 30 1 11.5197 2.5989 1.7728 31 6 5.3046 2.5179 1.1914 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.7512 1.9299 0.9311 38 1 1.6059 1.9814 -0.8422 39 1 2.2834 0.2798 -4.0614 40 1 3.8358 -0.3594 -3.2977 41 1 4.9695 4.0166 -5.1273 42 1 3.8489 5.4089 -6.8551 43 1 1.5805 4.8063 -7.6013 44 1 1.4876 1.5472 -5.0333 45 1 4.8139 -0.8005 1.3325 46 1 5.6334 -0.0227 -0.0631 47 1 7.3746 0.0268 1.6042 48 1 6.2101 0.3312 2.9296 49 1 9.6893 0.3783 2.8941 50 1 5.4367 2.9814 0.2136 51 1 4.9141 3.2480 1.9002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317767887.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:38 Heat of formation + Delta-G solvation = 61.488366 kcal Electronic energy + Delta-G solvation = -30536.480551 eV Core-core repulsion = 26630.756158 eV Total energy + Delta-G solvation = -3905.724393 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.81690 -40.00812 -37.60446 -36.09064 -35.90288 -32.99579 -32.66240 -31.77021 -31.05620 -29.11063 -27.47180 -26.18159 -25.04344 -24.58382 -23.87305 -23.24375 -21.90957 -21.19048 -20.40764 -20.04795 -18.46128 -17.66453 -17.14116 -16.83704 -16.33967 -16.05806 -15.31700 -14.89491 -14.84961 -14.59882 -14.47520 -14.23472 -14.08364 -13.85534 -13.46289 -13.27396 -13.05135 -12.83885 -12.48139 -12.29784 -12.24279 -12.01695 -11.94400 -11.58947 -11.52212 -11.44782 -11.19294 -10.97192 -10.89012 -10.80652 -10.72599 -10.53038 -10.42068 -10.01066 -9.95076 -9.74232 -9.69566 -9.47828 -9.18633 -8.96757 -8.54905 -8.27052 -6.68987 -5.54071 -2.94084 0.78827 1.02114 2.69192 3.08465 3.46231 3.46497 3.51368 3.54104 3.85864 4.07225 4.33687 4.48463 4.56432 4.60021 4.61860 4.72177 4.75087 4.79503 4.89320 4.95216 5.02198 5.12870 5.24982 5.29322 5.38864 5.48699 5.49989 5.52722 5.54690 5.61703 5.67344 5.77128 5.80567 5.83904 5.85500 5.88993 5.94088 5.98622 6.12184 6.14989 6.34872 6.41782 6.59800 6.64962 6.68883 6.81906 7.24785 7.58497 7.69195 7.70566 7.74276 7.96924 8.47110 8.52305 9.33430 9.94696 10.59955 11.50038 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010541 B = 0.003087 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.696303 B = 9068.330177 C =11099.566668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.109 3.891 4 N -0.601 5.601 5 C 0.535 3.465 6 O -0.505 6.505 7 C -0.172 4.172 8 H 0.122 0.878 9 C -0.143 4.143 10 C -0.086 4.086 11 H 0.131 0.869 12 C -0.098 4.098 13 C -0.065 4.065 14 C -0.169 4.169 15 C 0.089 3.911 16 N -0.483 5.483 17 C 0.096 3.904 18 C 0.136 3.864 19 H 0.087 0.913 20 C -0.153 4.153 21 C 0.158 3.842 22 N -0.596 5.596 23 C -0.212 4.212 24 H 0.075 0.925 25 C -0.014 4.014 26 N -0.924 5.924 27 Si 0.913 3.087 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.291 1.291 31 C 0.133 3.867 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.154 0.846 44 H 0.155 0.845 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.106 0.894 48 H 0.009 0.991 49 H 0.250 0.750 50 H 0.038 0.962 51 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.449 0.685 -14.416 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C -0.015 4.015 4 N -0.333 5.333 5 C 0.322 3.678 6 O -0.379 6.379 7 C -0.193 4.193 8 H 0.140 0.860 9 C -0.180 4.180 10 C -0.105 4.105 11 H 0.149 0.851 12 C -0.100 4.100 13 C -0.091 4.091 14 C -0.188 4.188 15 C -0.068 4.068 16 N -0.191 5.191 17 C -0.061 4.061 18 C 0.033 3.967 19 H 0.105 0.895 20 C -0.193 4.193 21 C 0.033 3.967 22 N -0.321 5.321 23 C -0.340 4.340 24 H 0.093 0.907 25 C -0.209 4.209 26 N -0.573 5.573 27 Si 0.744 3.256 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.218 1.218 31 C 0.006 3.994 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.172 0.828 44 H 0.172 0.828 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.124 0.876 48 H 0.027 0.973 49 H 0.060 0.940 50 H 0.056 0.944 51 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -19.418 0.496 -14.673 24.343 hybrid contribution 1.464 0.818 0.634 1.793 sum -17.954 1.313 -14.039 22.829 Atomic orbital electron populations 1.21706 0.95359 1.01850 1.01778 1.21963 0.95747 0.97294 1.03050 1.21675 0.80084 0.96897 1.02798 1.47896 1.06131 1.72902 1.06398 1.19443 0.88017 0.77032 0.83337 1.90827 1.13758 1.47650 1.85687 1.22471 1.01655 1.05322 0.89834 0.86004 1.23118 1.02740 0.91986 1.00135 1.20994 1.00074 0.97451 0.92006 0.85103 1.20173 0.95639 0.96418 0.97784 1.21540 1.00326 0.92898 0.94371 1.22172 0.96853 1.01174 0.98644 1.22767 0.92269 0.93814 0.97979 1.67700 1.36666 1.05162 1.09615 1.22676 0.92126 0.98024 0.93288 1.22194 0.91494 0.97975 0.85076 0.89492 1.23401 0.97845 0.95017 1.02988 1.21840 0.96508 0.84956 0.93437 1.44290 1.06439 1.04342 1.77074 1.19100 0.87502 0.91275 1.36156 0.90692 1.24756 0.97974 0.96066 1.02133 1.69811 1.27122 1.07924 1.52463 0.86007 0.83344 0.78916 0.77323 1.20633 1.21894 1.21830 1.21486 0.87077 0.93473 0.97400 0.92643 0.92704 0.92559 0.91534 0.91444 0.90599 0.90505 0.87589 0.87409 0.84401 0.84632 0.82828 0.82808 0.93014 0.90243 0.87597 0.97331 0.93963 0.94441 0.96781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.14 -1.27 6.26 -26.73 -0.17 -1.44 16 3 C 0.11 1.10 5.27 -4.04 -0.02 1.08 16 4 N -0.60 -8.76 2.54 -164.03 -0.42 -9.17 16 5 C 0.54 8.41 6.56 -10.99 -0.07 8.34 16 6 O -0.50 -10.46 12.60 5.56 0.07 -10.39 16 7 C -0.17 -1.92 4.92 -91.74 -0.45 -2.37 16 8 H 0.12 1.15 6.40 -51.93 -0.33 0.82 16 9 C -0.14 -1.32 9.57 -26.70 -0.26 -1.58 16 10 C -0.09 -0.95 5.57 -91.78 -0.51 -1.46 16 11 H 0.13 1.70 7.67 -51.93 -0.40 1.30 16 12 C -0.10 -1.00 5.62 -104.48 -0.59 -1.59 16 13 C -0.07 -0.64 9.89 -39.28 -0.39 -1.02 16 14 C -0.17 -1.40 10.11 -39.44 -0.40 -1.80 16 15 C 0.09 0.78 11.18 -17.55 -0.20 0.58 16 16 N -0.48 -5.13 10.36 -13.25 -0.14 -5.27 16 17 C 0.10 0.93 10.47 -17.55 -0.18 0.75 16 18 C 0.14 2.46 3.45 -66.10 -0.23 2.23 16 19 H 0.09 1.42 7.92 -51.93 -0.41 1.01 16 20 C -0.15 -3.14 6.41 -24.58 -0.16 -3.29 16 21 C 0.16 4.05 5.89 -2.53 -0.01 4.04 16 22 N -0.60 -16.24 3.39 -170.07 -0.58 -16.81 16 23 C -0.21 -6.25 10.27 -15.06 -0.15 -6.40 16 24 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 25 C -0.01 -0.43 5.49 -17.43 -0.10 -0.52 16 26 N -0.92 -28.03 10.09 55.49 0.56 -27.47 16 27 Si 0.91 23.03 29.55 -169.99 -5.02 18.01 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 31 C 0.13 3.00 6.48 -3.07 -0.02 2.98 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.72 8.03 -51.93 -0.42 0.31 16 38 H 0.08 0.65 5.84 -51.93 -0.30 0.35 16 39 H 0.11 0.71 6.21 -51.93 -0.32 0.39 16 40 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 42 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.15 1.18 6.04 -52.49 -0.32 0.87 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.08 1.77 5.97 -51.93 -0.31 1.46 16 47 H 0.11 3.09 5.87 -51.93 -0.30 2.78 16 48 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 50 H 0.04 0.91 6.11 -51.92 -0.32 0.59 16 51 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 402.84 15.07 6.07 6.07 Total: -1.00 -35.10 402.84 -11.04 -46.14 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.05 Total: 1.03 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -3.54 Total: -2.14 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.57 Total: -58.73 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.07 Total: -10.39 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.10 -11.04 -46.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317767887.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.630 kcal (2) G-P(sol) polarization free energy of solvation -35.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds