Wall clock time and date at job start Wed Apr 1 2020 02:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47256 * 2 1 4 4 N 1.46506 * 109.47223 * 184.96699 * 3 2 1 5 5 C 1.34775 * 119.99738 * 93.82716 * 4 3 2 6 6 O 1.21280 * 119.99730 * 180.02562 * 5 4 3 7 7 C 1.50699 * 120.00300 * 359.97438 * 5 4 3 8 8 H 1.09004 * 115.55746 * 34.31689 * 7 5 4 9 9 C 1.53069 * 117.49975 * 248.60245 * 7 5 4 10 10 C 1.52993 * 59.98517 * 252.51544 * 9 7 5 11 11 H 1.08999 * 117.49707 * 107.50410 * 10 9 7 12 12 C 1.50699 * 117.50063 * 252.49586 * 10 9 7 13 13 C 1.38669 * 120.42378 * 188.74924 * 12 10 9 14 14 C 1.38623 * 118.42531 * 179.97438 * 13 12 10 15 15 C 1.38230 * 119.16115 * 0.02562 * 14 13 12 16 16 N 1.31852 * 120.76077 * 0.25086 * 15 14 13 17 17 C 1.31882 * 121.72936 * 359.48026 * 16 15 14 18 18 C 1.46500 * 120.00075 * 273.82675 * 4 3 2 19 19 H 1.08999 * 110.63554 * 359.79855 * 18 4 3 20 20 C 1.55157 * 110.71651 * 123.13262 * 18 4 3 21 21 C 1.54907 * 101.57865 * 153.86855 * 20 18 4 22 22 N 1.47427 * 104.83194 * 322.98506 * 21 20 18 23 23 C 1.36935 * 125.65063 * 204.09186 * 22 21 20 24 24 H 1.08002 * 119.99837 * 180.02562 * 23 22 21 25 25 C 1.38817 * 120.00010 * 0.04373 * 23 22 21 26 26 N 1.31621 * 119.99730 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00083 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47047 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.46919 * 120.00456 * 27 25 23 30 30 H 1.48500 * 109.47155 * 240.00562 * 27 25 23 31 31 C 1.47017 * 108.70110 * 24.13475 * 22 21 20 32 32 H 1.09000 * 109.46775 * 300.00187 * 1 2 3 33 33 H 1.09004 * 109.46805 * 59.99893 * 1 2 3 34 34 H 1.08999 * 109.47184 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.46775 * 239.99813 * 2 1 3 36 36 H 1.09004 * 109.46805 * 120.00107 * 2 1 3 37 37 H 1.08997 * 109.47135 * 64.96753 * 3 2 1 38 38 H 1.09006 * 109.47238 * 304.96759 * 3 2 1 39 39 H 1.09004 * 117.51063 * 145.03187 * 9 7 5 40 40 H 1.09005 * 117.51301 * 359.97438 * 9 7 5 41 41 H 1.08006 * 120.78729 * 359.97438 * 13 12 10 42 42 H 1.07998 * 120.42380 * 180.02562 * 14 13 12 43 43 H 1.07997 * 119.61908 * 179.97438 * 15 14 13 44 44 H 1.07998 * 119.62197 * 180.26965 * 17 16 15 45 45 H 1.09001 * 111.00259 * 271.93510 * 20 18 4 46 46 H 1.08999 * 111.00792 * 35.79054 * 20 18 4 47 47 H 1.09002 * 110.36459 * 204.15180 * 21 20 18 48 48 H 1.09004 * 110.37372 * 81.82597 * 21 20 18 49 49 H 0.97003 * 119.99889 * 180.02562 * 26 25 23 50 50 H 1.09008 * 109.88075 * 239.52206 * 31 22 21 51 51 H 1.08996 * 109.88942 * 118.35581 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5002 1.4441 -0.1196 5 6 4.0768 1.5564 -1.3326 6 8 5.2855 1.5574 -1.4316 7 6 3.2196 1.6796 -2.5659 8 1 2.2876 2.2301 -2.4378 9 6 3.2171 0.5033 -3.5453 10 6 3.9339 1.8039 -3.9132 11 1 5.0239 1.7967 -3.9075 12 6 3.2952 2.6779 -4.9615 13 6 3.9753 3.7733 -5.4720 14 6 3.3487 4.5488 -6.4352 15 6 2.0757 4.2071 -6.8516 16 7 1.4568 3.1612 -6.3400 17 6 2.0241 2.3983 -5.4260 18 6 4.3335 1.3238 1.0793 19 1 3.7131 1.2461 1.9721 20 6 5.2900 0.1077 0.9631 21 6 6.4553 0.5392 1.8880 22 7 6.5901 1.9914 1.6728 23 6 7.7244 2.7281 1.8868 24 1 7.7211 3.7916 1.6986 25 6 8.8787 2.1079 2.3451 26 7 8.8829 0.8116 2.5735 27 14 10.4263 3.1126 2.6363 28 1 10.1616 4.5362 2.3063 29 1 10.8275 3.0017 4.0617 30 1 11.5197 2.5989 1.7728 31 6 5.3046 2.5179 1.1914 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.7512 1.9299 0.9311 38 1 1.6059 1.9814 -0.8422 39 1 2.2834 0.2798 -4.0614 40 1 3.8358 -0.3594 -3.2977 41 1 4.9695 4.0166 -5.1273 42 1 3.8489 5.4089 -6.8551 43 1 1.5805 4.8063 -7.6013 44 1 1.4876 1.5472 -5.0333 45 1 4.8139 -0.8005 1.3325 46 1 5.6334 -0.0227 -0.0631 47 1 7.3746 0.0268 1.6042 48 1 6.2101 0.3312 2.9296 49 1 9.6893 0.3783 2.8941 50 1 5.4367 2.9814 0.2136 51 1 4.9141 3.2480 1.9002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317767887.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:36 Heat of formation + Delta-G solvation = 41.068726 kcal Electronic energy + Delta-G solvation = -30537.366013 eV Core-core repulsion = 26630.756158 eV Total energy + Delta-G solvation = -3906.609855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.77952 -41.00921 -38.94256 -37.40663 -37.06500 -34.56058 -33.37161 -33.21835 -31.82947 -31.03375 -29.16514 -27.04182 -26.80308 -25.47252 -24.95339 -24.17881 -22.74227 -22.22061 -21.99749 -21.57391 -19.60634 -18.98025 -18.47114 -18.06523 -17.28448 -17.13860 -16.73225 -16.25819 -16.06283 -15.79848 -15.60160 -15.43476 -15.04438 -14.87749 -14.80357 -14.35488 -14.07559 -13.97750 -13.79275 -13.63726 -13.43717 -13.07539 -13.00296 -12.92648 -12.76919 -12.71187 -12.67344 -12.44180 -12.20263 -12.05346 -12.00807 -11.95639 -11.85041 -11.66298 -11.43473 -11.31331 -10.76469 -10.66195 -10.49214 -10.40199 -9.76792 -9.56694 -8.87364 -7.78231 -5.21903 0.10244 0.31389 1.41758 1.44509 1.54443 1.56029 1.93750 2.48366 2.67790 3.04374 3.28558 3.32020 3.58705 3.64338 3.73068 3.74866 3.88072 3.90112 3.98318 4.01786 4.06991 4.10804 4.17458 4.24948 4.25386 4.35385 4.46853 4.57049 4.63116 4.68202 4.72352 4.75691 4.79344 4.89974 4.94111 4.97481 4.99702 5.02941 5.06212 5.09329 5.22713 5.31572 5.33718 5.37892 5.41142 5.54460 5.62913 5.76015 5.76659 5.80011 6.29386 6.51471 7.01174 7.09523 7.30997 7.77207 8.41375 9.23768 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010541 B = 0.003087 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.696303 B = 9068.330177 C =11099.566668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.103 3.897 4 N -0.596 5.596 5 C 0.528 3.472 6 O -0.566 6.566 7 C -0.169 4.169 8 H 0.149 0.851 9 C -0.119 4.119 10 C -0.093 4.093 11 H 0.099 0.901 12 C -0.106 4.106 13 C -0.084 4.084 14 C -0.166 4.166 15 C 0.084 3.916 16 N -0.504 5.504 17 C 0.094 3.906 18 C 0.153 3.847 19 H 0.115 0.885 20 C -0.136 4.136 21 C 0.161 3.839 22 N -0.618 5.618 23 C -0.236 4.236 24 H 0.073 0.927 25 C -0.069 4.069 26 N -0.949 5.949 27 Si 0.982 3.018 28 H -0.269 1.269 29 H -0.286 1.286 30 H -0.292 1.292 31 C 0.131 3.869 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.143 0.857 40 H 0.096 0.904 41 H 0.134 0.866 42 H 0.160 0.840 43 H 0.181 0.819 44 H 0.176 0.824 45 H 0.082 0.918 46 H 0.058 0.942 47 H 0.065 0.935 48 H -0.005 1.005 49 H 0.247 0.753 50 H 0.017 0.983 51 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.593 1.252 -15.487 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C -0.018 4.018 4 N -0.327 5.327 5 C 0.317 3.683 6 O -0.445 6.445 7 C -0.190 4.190 8 H 0.167 0.833 9 C -0.156 4.156 10 C -0.112 4.112 11 H 0.118 0.882 12 C -0.108 4.108 13 C -0.110 4.110 14 C -0.186 4.186 15 C -0.072 4.072 16 N -0.212 5.212 17 C -0.062 4.062 18 C 0.049 3.951 19 H 0.133 0.867 20 C -0.175 4.175 21 C 0.036 3.964 22 N -0.344 5.344 23 C -0.365 4.365 24 H 0.091 0.909 25 C -0.262 4.262 26 N -0.599 5.599 27 Si 0.810 3.190 28 H -0.194 1.194 29 H -0.213 1.213 30 H -0.219 1.219 31 C 0.004 3.996 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.161 0.839 40 H 0.115 0.885 41 H 0.152 0.848 42 H 0.177 0.823 43 H 0.198 0.802 44 H 0.193 0.807 45 H 0.100 0.900 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.013 0.987 49 H 0.057 0.943 50 H 0.035 0.965 51 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -22.637 1.067 -15.750 27.598 hybrid contribution 2.456 0.677 0.923 2.709 sum -20.181 1.744 -14.826 25.103 Atomic orbital electron populations 1.21668 0.93404 1.02411 1.02682 1.21899 0.97289 0.95996 1.02346 1.22034 0.76862 0.98355 1.04566 1.47942 1.07837 1.72050 1.04887 1.20243 0.87755 0.75515 0.84756 1.90808 1.16663 1.50360 1.86655 1.22394 1.01607 1.07291 0.87694 0.83322 1.23236 1.03557 0.90567 0.98193 1.20829 0.98658 0.99325 0.92408 0.88248 1.20113 0.96174 0.96558 0.97943 1.21730 1.00554 0.93508 0.95228 1.22430 0.96808 1.01473 0.97852 1.23258 0.92402 0.93526 0.98049 1.67759 1.37286 1.05964 1.10190 1.22942 0.91786 0.98472 0.92999 1.21886 0.91218 0.94224 0.87787 0.86713 1.23139 0.96671 0.97300 1.00420 1.21597 0.96852 0.84323 0.93649 1.44582 1.07572 1.05090 1.77130 1.19429 0.88976 0.91625 1.36440 0.90939 1.25651 1.01033 0.97303 1.02168 1.70076 1.27612 1.09331 1.52892 0.84953 0.78995 0.77937 0.77102 1.19358 1.21269 1.21864 1.21607 0.86521 0.95442 0.95996 0.92210 0.91351 0.92222 0.91851 0.92667 0.89387 0.88088 0.83943 0.88531 0.84850 0.82277 0.80229 0.80710 0.89982 0.92355 0.91648 0.98698 0.94349 0.96464 0.96200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.14 -2.02 6.26 30.59 0.19 -1.83 16 3 C 0.10 1.76 5.27 86.38 0.45 2.21 16 4 N -0.60 -16.61 2.54 -791.26 -2.01 -18.62 16 5 C 0.53 16.57 6.56 87.66 0.57 17.15 16 6 O -0.57 -24.65 12.60 -3.03 -0.04 -24.69 16 7 C -0.17 -3.53 4.92 -11.52 -0.06 -3.58 16 8 H 0.15 2.28 6.40 -2.38 -0.02 2.27 16 9 C -0.12 -1.97 9.57 30.62 0.29 -1.67 16 10 C -0.09 -2.01 5.57 -11.54 -0.06 -2.08 16 11 H 0.10 2.80 7.67 -2.39 -0.02 2.79 16 12 C -0.11 -2.04 5.62 -19.77 -0.11 -2.15 16 13 C -0.08 -1.60 9.89 22.46 0.22 -1.38 16 14 C -0.17 -2.48 10.11 22.36 0.23 -2.26 16 15 C 0.08 1.28 11.18 84.69 0.95 2.23 16 16 N -0.50 -9.44 10.36 -195.84 -2.03 -11.46 16 17 C 0.09 1.61 10.47 84.67 0.89 2.49 16 18 C 0.15 5.47 3.45 46.18 0.16 5.63 16 19 H 0.12 3.49 7.92 -2.39 -0.02 3.48 16 20 C -0.14 -5.66 6.41 31.99 0.21 -5.45 16 21 C 0.16 8.63 5.89 86.85 0.51 9.15 16 22 N -0.62 -35.03 3.39 -691.98 -2.35 -37.38 16 23 C -0.24 -14.42 10.27 84.03 0.86 -13.55 16 24 H 0.07 4.33 7.83 -2.91 -0.02 4.30 16 25 C -0.07 -4.21 5.49 84.86 0.47 -3.75 16 26 N -0.95 -59.89 10.09 21.65 0.22 -59.67 16 27 Si 0.98 48.57 29.55 68.60 2.03 50.60 16 28 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 29 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 30 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 31 C 0.13 6.06 6.48 86.73 0.56 6.62 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.09 1.34 8.03 -2.39 -0.02 1.33 16 38 H 0.10 1.27 5.84 -2.38 -0.01 1.26 16 39 H 0.14 1.33 6.21 -2.38 -0.01 1.31 16 40 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 43 H 0.18 1.63 8.06 -2.91 -0.02 1.60 16 44 H 0.18 2.02 6.04 -2.91 -0.02 2.00 16 45 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 46 H 0.06 2.70 5.97 -2.39 -0.01 2.69 16 47 H 0.07 4.04 5.87 -2.39 -0.01 4.03 16 48 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 49 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 50 H 0.02 0.88 6.11 -2.38 -0.01 0.86 16 51 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -81.72 402.84 3.79 -77.93 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.92 Total: 16.25 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 7.04 Total: 7.05 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -6.17 Total: -127.13 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.04 Total: -24.69 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -81.72 3.79 -77.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317767887.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.999 kcal (2) G-P(sol) polarization free energy of solvation -81.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds