Wall clock time and date at job start Wed Apr 1 2020 03:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.49972 * 2 1 4 4 C 1.53107 * 109.51154 * 239.93034 * 2 1 3 5 5 C 1.53043 * 109.49943 * 178.68270 * 4 2 1 6 6 C 1.53191 * 109.33743 * 61.35594 * 5 4 2 7 7 N 1.46924 * 108.77433 * 305.34150 * 6 5 4 8 8 C 1.34772 * 120.63542 * 233.58924 * 7 6 5 9 9 O 1.21278 * 120.00501 * 174.74245 * 8 7 6 10 10 C 1.50699 * 119.99755 * 354.75021 * 8 7 6 11 11 C 1.53004 * 109.47112 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47180 * 179.97438 * 11 10 8 13 13 F 1.39895 * 109.47414 * 180.02562 * 12 11 10 14 14 C 1.46933 * 118.73645 * 53.61187 * 7 6 5 15 15 H 1.09001 * 109.58278 * 66.17779 * 14 7 6 16 16 C 1.53002 * 109.58426 * 186.46002 * 14 7 6 17 17 N 1.46896 * 109.46741 * 183.82404 * 16 14 7 18 18 C 1.46907 * 110.99936 * 175.36568 * 17 16 14 19 19 C 1.50706 * 109.47054 * 179.97438 * 18 17 16 20 20 O 1.21287 * 120.00133 * 359.97438 * 19 18 17 21 21 N 1.34769 * 119.99678 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00097 * 180.02562 * 21 19 18 23 23 H 1.07997 * 119.99262 * 359.97438 * 22 21 19 24 24 C 1.38945 * 120.00077 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00274 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99827 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46957 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47227 * 119.99789 * 26 24 22 29 29 H 1.48502 * 109.46904 * 239.99520 * 26 24 22 30 30 H 1.09005 * 109.47094 * 309.01237 * 1 2 3 31 31 H 1.08997 * 109.47553 * 69.00789 * 1 2 3 32 32 H 1.09004 * 109.47589 * 189.01676 * 1 2 3 33 33 H 1.09004 * 109.50336 * 58.66085 * 4 2 1 34 34 H 1.08996 * 109.45213 * 298.67660 * 4 2 1 35 35 H 1.08994 * 109.50210 * 301.38008 * 5 4 2 36 36 H 1.09005 * 109.49218 * 181.31552 * 5 4 2 37 37 H 1.08997 * 109.59251 * 65.13058 * 6 5 4 38 38 H 1.09003 * 109.58580 * 185.55776 * 6 5 4 39 39 H 1.09001 * 109.46863 * 299.99677 * 10 8 7 40 40 H 1.09001 * 109.47821 * 59.99631 * 10 8 7 41 41 H 1.08993 * 109.47024 * 299.99942 * 11 10 8 42 42 H 1.09002 * 109.46736 * 60.00222 * 11 10 8 43 43 H 1.09001 * 109.47097 * 300.00062 * 12 11 10 44 44 H 1.09004 * 109.47035 * 59.99866 * 12 11 10 45 45 H 1.08995 * 109.47288 * 303.82469 * 16 14 7 46 46 H 1.09000 * 109.46871 * 63.82794 * 16 14 7 47 47 H 1.00901 * 111.00246 * 51.41160 * 17 16 14 48 48 H 1.08999 * 109.47061 * 300.00083 * 18 17 16 49 49 H 1.08996 * 109.47094 * 60.00216 * 18 17 16 50 50 H 0.97007 * 120.00256 * 359.97438 * 21 19 18 51 51 H 0.97005 * 120.00272 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7231 -1.2489 5 6 3.5714 -0.6943 -1.2654 6 6 4.1059 -1.4256 -0.0300 7 7 3.5047 -0.8282 1.1702 8 6 4.2807 -0.3850 2.1790 9 8 3.7799 0.1919 3.1209 10 6 5.7708 -0.6061 2.1365 11 6 6.4108 -0.0105 3.3922 12 6 7.9236 -0.2356 3.3494 13 9 8.5087 0.3085 4.4977 14 6 2.0413 -0.7235 1.2498 15 1 1.6057 -1.7215 1.2982 16 6 1.6510 0.0678 2.4998 17 7 0.1877 0.0928 2.6263 18 6 -0.2216 0.7503 3.8747 19 6 -1.7257 0.7575 3.9689 20 8 -2.3912 0.2640 3.0831 21 7 -2.3313 1.3124 5.0374 22 6 -3.6996 1.3185 5.1234 23 1 -4.2920 0.8791 4.3346 24 6 -4.3239 1.8910 6.2248 25 7 -3.6029 2.4262 7.1842 26 14 -6.1882 1.8987 6.3422 27 1 -6.7624 1.2385 5.1424 28 1 -6.6104 1.1641 7.5618 29 1 -6.6737 3.3002 6.4156 30 1 -0.3633 0.6469 0.7985 31 1 -0.3634 0.3681 -0.9594 32 1 -0.3634 -1.0150 0.1611 33 1 1.6592 -0.2249 -2.1400 34 1 1.6977 -1.7574 -1.2358 35 1 3.9161 0.3397 -1.2536 36 1 3.9349 -1.1887 -2.1663 37 1 3.8386 -2.4809 -0.0858 38 1 5.1901 -1.3231 0.0148 39 1 5.9783 -1.6754 2.0948 40 1 6.1852 -0.1209 1.2528 41 1 6.2032 1.0587 3.4334 42 1 5.9965 -0.4955 4.2761 43 1 8.1308 -1.3049 3.3083 44 1 8.3381 0.2491 2.4654 45 1 2.0837 -0.4071 3.3803 46 1 2.0259 1.0878 2.4159 47 1 -0.1965 -0.8382 2.5652 48 1 0.1934 0.2078 4.7241 49 1 0.1475 1.7759 3.8831 50 1 -1.7990 1.7068 5.7460 51 1 -4.0387 2.8256 7.9534 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319854161.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:54 Heat of formation + Delta-G solvation = -140.627999 kcal Electronic energy + Delta-G solvation = -30922.473279 eV Core-core repulsion = 26577.215239 eV Total energy + Delta-G solvation = -4345.258041 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -48.53232 -41.75225 -40.14358 -38.86057 -36.92975 -35.89360 -35.01629 -34.48046 -33.31254 -32.78051 -29.85600 -28.57643 -27.38643 -26.71798 -25.49187 -24.04901 -23.01236 -22.42153 -21.32228 -21.07849 -20.03609 -19.79180 -18.20936 -17.53782 -17.39735 -17.28924 -16.77798 -16.67598 -16.50638 -16.34089 -15.95914 -15.70775 -15.56939 -15.49319 -15.14069 -14.83370 -14.72981 -14.31203 -14.08897 -13.99777 -13.80674 -13.53643 -13.45739 -13.22515 -12.95232 -12.87789 -12.73858 -12.62156 -12.42420 -12.39392 -12.32893 -12.11780 -11.96263 -11.91780 -11.75431 -11.53310 -11.52055 -11.50172 -11.20212 -10.42511 -10.31017 -10.02819 -9.59226 -8.97485 -8.47490 -5.96780 1.35761 1.40311 1.55428 1.65099 1.90793 2.03058 2.28569 2.94277 3.19211 3.41067 3.60218 3.72697 3.75413 3.86184 3.90123 3.94843 4.12193 4.17665 4.25511 4.26931 4.31829 4.33721 4.43094 4.44657 4.54037 4.56648 4.63092 4.66980 4.74659 4.79731 4.90159 4.90666 4.98043 4.99344 5.03329 5.09152 5.18357 5.30125 5.31327 5.35233 5.39798 5.54597 5.60552 5.84330 5.92179 6.06239 6.37911 6.49341 6.58098 7.10733 7.23577 7.54113 8.08592 8.70503 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.011685 B = 0.002376 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.746213 B =11781.016633 C =14007.069197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 H 0.053 0.947 4 C -0.116 4.116 5 C -0.131 4.131 6 C 0.102 3.898 7 N -0.607 5.607 8 C 0.498 3.502 9 O -0.576 6.576 10 C -0.126 4.126 11 C -0.138 4.138 12 C 0.060 3.940 13 F -0.243 7.243 14 C 0.156 3.844 15 H 0.073 0.927 16 C 0.081 3.919 17 N -0.667 5.667 18 C 0.067 3.933 19 C 0.443 3.557 20 O -0.615 6.615 21 N -0.575 5.575 22 C -0.331 4.331 23 H 0.081 0.919 24 C -0.017 4.017 25 N -0.923 5.923 26 Si 0.996 3.004 27 H -0.271 1.271 28 H -0.270 1.270 29 H -0.271 1.271 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.046 0.954 46 H 0.060 0.940 47 H 0.341 0.659 48 H 0.054 0.946 49 H 0.092 0.908 50 H 0.394 0.606 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.962 -9.639 -16.878 32.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.071 0.929 4 C -0.154 4.154 5 C -0.169 4.169 6 C -0.019 4.019 7 N -0.340 5.340 8 C 0.289 3.711 9 O -0.455 6.455 10 C -0.166 4.166 11 C -0.177 4.177 12 C 0.005 3.995 13 F -0.224 7.224 14 C 0.052 3.948 15 H 0.091 0.909 16 C -0.047 4.047 17 N -0.301 5.301 18 C -0.066 4.066 19 C 0.230 3.770 20 O -0.501 6.501 21 N -0.212 5.212 22 C -0.461 4.461 23 H 0.099 0.901 24 C -0.216 4.216 25 N -0.564 5.564 26 Si 0.820 3.180 27 H -0.196 1.196 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.064 0.936 46 H 0.078 0.922 47 H 0.160 0.840 48 H 0.072 0.928 49 H 0.110 0.890 50 H 0.228 0.772 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 25.189 -9.006 -17.158 31.781 hybrid contribution -0.876 -0.006 1.607 1.830 sum 24.313 -9.012 -15.551 30.235 Atomic orbital electron populations 1.21974 0.94438 1.02388 1.01796 1.21331 0.95979 0.98635 0.94207 0.92854 1.21656 0.96341 1.00797 0.96588 1.21928 0.94897 1.01450 0.98624 1.22123 0.99848 0.97664 0.82297 1.48317 1.05467 1.60897 1.19334 1.21439 0.90839 0.77512 0.81337 1.90776 1.75108 1.43128 1.36535 1.21628 0.89107 1.05472 1.00348 1.21860 0.95160 1.02059 0.98597 1.22239 0.91361 1.00944 0.84931 1.92731 1.85968 1.88682 1.55056 1.21220 0.80084 0.98582 0.94902 0.90917 1.22461 0.84967 1.00405 0.96859 1.60541 1.10536 1.25121 1.33884 1.21441 0.91173 1.01350 0.92603 1.20694 0.90701 0.82669 0.82922 1.90472 1.67343 1.51312 1.40987 1.41961 1.07081 1.52287 1.19915 1.19731 0.82745 1.37321 1.06284 0.90059 1.26113 1.05172 0.95760 0.94556 1.69699 1.37944 1.38782 1.10023 0.84825 0.76563 0.78326 0.78320 1.19577 1.19539 1.19614 0.90561 0.93772 0.93795 0.91462 0.91339 0.92013 0.87982 0.89811 0.86275 0.85446 0.85389 0.92320 0.92397 0.88157 0.88077 0.93611 0.92185 0.84044 0.92813 0.89023 0.77216 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 8.09 71.98 0.58 -3.52 16 2 C -0.08 -1.80 2.34 -10.69 -0.03 -1.82 16 3 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.12 -1.67 5.16 30.64 0.16 -1.51 16 5 C -0.13 -1.09 6.08 30.67 0.19 -0.90 16 6 C 0.10 0.73 6.33 86.36 0.55 1.27 16 7 N -0.61 -9.96 2.97 -795.02 -2.36 -12.32 16 8 C 0.50 9.47 7.61 87.66 0.67 10.13 16 9 O -0.58 -16.81 11.40 -3.02 -0.03 -16.84 16 10 C -0.13 -1.07 4.10 29.85 0.12 -0.94 16 11 C -0.14 -1.90 4.96 30.60 0.15 -1.75 16 12 C 0.06 0.54 7.55 71.98 0.54 1.08 16 13 F -0.24 -4.50 17.36 44.97 0.78 -3.72 16 14 C 0.16 3.54 2.65 44.97 0.12 3.66 16 15 H 0.07 1.64 8.12 -2.39 -0.02 1.62 16 16 C 0.08 2.45 3.53 86.30 0.30 2.76 16 17 N -0.67 -23.40 2.76 -517.92 -1.43 -24.83 16 18 C 0.07 2.66 6.16 85.56 0.53 3.19 16 19 C 0.44 22.40 7.82 87.66 0.69 23.08 16 20 O -0.62 -34.92 15.78 -3.05 -0.05 -34.96 16 21 N -0.58 -31.29 5.29 -306.99 -1.62 -32.91 16 22 C -0.33 -19.51 9.68 84.04 0.81 -18.70 16 23 H 0.08 5.06 7.16 -2.91 -0.02 5.04 16 24 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 25 N -0.92 -51.95 13.05 21.66 0.28 -51.67 16 26 Si 1.00 44.25 29.55 68.60 2.03 46.27 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 29 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 30 H 0.08 2.72 5.75 -2.38 -0.01 2.70 16 31 H 0.04 1.14 8.12 -2.39 -0.02 1.12 16 32 H 0.04 1.21 8.11 -2.39 -0.02 1.19 16 33 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 37 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.12 0.06 5.96 -2.39 -0.01 0.05 16 39 H 0.13 0.32 8.12 -2.39 -0.02 0.30 16 40 H 0.13 0.29 7.47 -2.39 -0.02 0.28 16 41 H 0.06 1.08 8.10 -2.39 -0.02 1.07 16 42 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 43 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 45 H 0.05 1.54 6.13 -2.41 -0.01 1.52 16 46 H 0.06 2.06 7.29 -2.39 -0.02 2.04 16 47 H 0.34 12.18 8.21 -89.69 -0.74 11.44 16 48 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.09 3.51 8.14 -2.39 -0.02 3.50 16 50 H 0.39 20.74 7.90 -92.70 -0.73 20.00 16 51 H 0.28 14.53 8.31 -92.70 -0.77 13.76 16 Total: -1.00 -77.28 401.32 2.91 -74.37 By element: Atomic # 1 Polarization: 41.58 SS G_CDS: -0.53 Total: 41.05 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 5.85 Total: 15.56 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -5.13 Total: -121.73 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -0.08 Total: -51.80 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.78 Total: -3.72 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -77.28 2.91 -74.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319854161.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.257 kcal (2) G-P(sol) polarization free energy of solvation -77.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds