Wall clock time and date at job start Wed Apr 1 2020 03:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49871 * 2 1 4 4 C 1.53043 * 109.49701 * 120.09292 * 2 1 3 5 5 C 1.53047 * 109.53764 * 181.31677 * 4 2 1 6 6 C 1.53188 * 109.31199 * 298.63645 * 5 4 2 7 7 N 1.46932 * 108.77612 * 54.64087 * 6 5 4 8 8 C 1.34772 * 120.63461 * 126.36594 * 7 6 5 9 9 O 1.21280 * 119.99832 * 175.30069 * 8 7 6 10 10 C 1.50700 * 119.99830 * 355.30378 * 8 7 6 11 11 C 1.53002 * 109.47106 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47359 * 179.97438 * 11 10 8 13 13 F 1.39895 * 109.47356 * 180.02562 * 12 11 10 14 14 C 1.46923 * 118.73290 * 306.38414 * 7 6 5 15 15 H 1.08998 * 109.70693 * 293.75328 * 14 7 6 16 16 C 1.53006 * 109.58568 * 173.40040 * 14 7 6 17 17 N 1.46897 * 109.47068 * 178.68721 * 16 14 7 18 18 C 1.46904 * 110.99788 * 184.67284 * 17 16 14 19 19 C 1.50701 * 109.47315 * 179.97438 * 18 17 16 20 20 O 1.21293 * 119.99752 * 359.97438 * 19 18 17 21 21 N 1.34768 * 120.00296 * 180.02562 * 19 18 17 22 22 C 1.37093 * 120.00057 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00357 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99839 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00251 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99701 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47513 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46909 * 120.00672 * 26 24 22 29 29 H 1.48501 * 109.46977 * 239.99974 * 26 24 22 30 30 H 1.08998 * 109.46834 * 171.36869 * 1 2 3 31 31 H 1.09000 * 109.46851 * 51.37739 * 1 2 3 32 32 H 1.08994 * 109.47417 * 291.37461 * 1 2 3 33 33 H 1.08996 * 109.46197 * 301.34169 * 4 2 1 34 34 H 1.09001 * 109.45344 * 61.30031 * 4 2 1 35 35 H 1.08994 * 109.49595 * 178.68578 * 5 4 2 36 36 H 1.08998 * 109.52005 * 58.60824 * 5 4 2 37 37 H 1.08996 * 109.59193 * 294.84590 * 6 5 4 38 38 H 1.09001 * 109.70169 * 174.48742 * 6 5 4 39 39 H 1.08997 * 109.46942 * 299.99533 * 10 8 7 40 40 H 1.08997 * 109.47454 * 60.00279 * 10 8 7 41 41 H 1.08997 * 109.47533 * 300.00225 * 11 10 8 42 42 H 1.09010 * 109.46889 * 59.99839 * 11 10 8 43 43 H 1.09004 * 109.47135 * 300.00234 * 12 11 10 44 44 H 1.09002 * 109.47428 * 60.00038 * 12 11 10 45 45 H 1.09004 * 109.46511 * 298.68057 * 16 14 7 46 46 H 1.08995 * 109.46938 * 58.68074 * 16 14 7 47 47 H 1.00899 * 110.99989 * 308.62066 * 17 16 14 48 48 H 1.09000 * 109.47018 * 299.99652 * 18 17 16 49 49 H 1.08998 * 109.46915 * 59.99552 * 18 17 16 50 50 H 0.96998 * 119.99854 * 359.97438 * 21 19 18 51 51 H 0.96997 * 119.99982 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7234 1.2482 5 6 3.5709 -0.6953 1.2659 6 6 4.1053 -1.4267 0.0305 7 7 3.5047 -0.8287 -1.1697 8 6 4.2812 -0.3849 -2.1779 9 8 3.7726 0.0281 -3.1985 10 6 5.7815 -0.4019 -2.0370 11 6 6.4199 0.1496 -3.3134 12 6 7.9431 0.1330 -3.1702 13 9 8.5268 0.6378 -4.3371 14 6 2.0414 -0.7234 -1.2497 15 1 1.6034 -1.7203 -1.2998 16 6 1.6518 0.0712 -2.4979 17 7 0.1879 0.1480 -2.5923 18 6 -0.2254 0.8088 -3.8375 19 6 -1.7299 0.8685 -3.8992 20 8 -2.3928 0.4057 -2.9949 21 7 -2.3390 1.4353 -4.9594 22 6 -3.7077 1.4891 -5.0157 23 1 -4.2980 1.0770 -4.2106 24 6 -4.3356 2.0739 -6.1086 25 7 -3.6176 2.5749 -7.0885 26 14 -6.2007 2.1479 -6.1849 27 1 -6.7713 1.5197 -4.9664 28 1 -6.6371 3.5652 -6.2614 29 1 -6.6762 1.4181 -7.3877 30 1 -0.3633 -1.0160 -0.1542 31 1 -0.3633 0.6415 -0.8029 32 1 -0.3634 0.3745 0.9569 33 1 1.6581 -0.2250 2.1389 34 1 1.6967 -1.7575 1.2348 35 1 3.9334 -1.1902 2.1668 36 1 3.9163 0.3384 1.2546 37 1 3.8376 -2.4818 0.0862 38 1 5.1898 -1.3267 -0.0152 39 1 6.0737 0.2160 -1.1880 40 1 6.1197 -1.4254 -1.8751 41 1 6.1277 -0.4685 -4.1623 42 1 6.0818 1.1732 -3.4758 43 1 8.2350 0.7514 -2.3214 44 1 8.2816 -0.8903 -3.0076 45 1 2.0649 1.0777 -2.4313 46 1 2.0475 -0.4262 -3.3834 47 1 -0.2281 -0.7679 -2.5137 48 1 0.1801 1.8203 -3.8639 49 1 0.1508 0.2442 -4.6906 50 1 -1.8089 1.8051 -5.6827 51 1 -4.0559 2.9828 -7.8516 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319854162.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:59 Heat of formation + Delta-G solvation = -117.466913 kcal Electronic energy + Delta-G solvation = -30938.845526 eV Core-core repulsion = 26594.591825 eV Total energy + Delta-G solvation = -4344.253701 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -47.92912 -40.94242 -38.30318 -37.92610 -35.73274 -34.37185 -33.82169 -33.59895 -31.93956 -31.11386 -28.88076 -27.38484 -26.54966 -25.39123 -24.12855 -22.86164 -22.41866 -21.59426 -20.45567 -19.42461 -18.97557 -17.80580 -17.24043 -16.90529 -16.51940 -15.98555 -15.77555 -15.73751 -15.32186 -15.02737 -14.88860 -14.71089 -14.40167 -14.23101 -14.04112 -13.67775 -13.63499 -13.19453 -13.08913 -12.96794 -12.58719 -12.39591 -12.23513 -11.92818 -11.78236 -11.70976 -11.50315 -11.45625 -11.40021 -11.36831 -11.15878 -11.04848 -11.01425 -10.96258 -10.65469 -10.31117 -10.27868 -10.16270 -9.49984 -9.45063 -8.80095 -8.30880 -7.90197 -7.60536 -6.35627 -3.76213 2.37402 2.63293 3.20236 3.30197 3.37565 3.94436 3.99845 4.19550 4.27576 4.34123 4.38035 4.54102 4.57634 4.60710 4.65631 4.72327 4.78755 4.82402 4.98634 5.04350 5.10466 5.23500 5.27451 5.29048 5.33237 5.38073 5.48274 5.55401 5.63017 5.65813 5.81567 5.85707 5.87371 5.95529 6.02295 6.04871 6.16541 6.18253 6.33083 6.34731 6.46941 6.56225 7.13330 7.17411 7.37063 7.60931 7.77210 7.99808 8.13343 8.68358 9.24235 9.62130 10.13597 10.82358 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.011844 B = 0.002371 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.524697 B =11804.384782 C =13988.083908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.089 4.089 3 H 0.068 0.932 4 C -0.119 4.119 5 C -0.136 4.136 6 C 0.108 3.892 7 N -0.609 5.609 8 C 0.512 3.488 9 O -0.525 6.525 10 C -0.139 4.139 11 C -0.140 4.140 12 C 0.063 3.937 13 F -0.217 7.217 14 C 0.152 3.848 15 H 0.070 0.930 16 C 0.061 3.939 17 N -0.666 5.666 18 C 0.052 3.948 19 C 0.443 3.557 20 O -0.584 6.584 21 N -0.566 5.566 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.020 3.980 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.045 0.955 31 H 0.118 0.882 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.344 0.656 48 H 0.084 0.916 49 H 0.043 0.957 50 H 0.392 0.608 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.940 -8.070 15.010 29.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.108 4.108 3 H 0.087 0.913 4 C -0.157 4.157 5 C -0.174 4.174 6 C -0.015 4.015 7 N -0.343 5.343 8 C 0.300 3.700 9 O -0.401 6.401 10 C -0.179 4.179 11 C -0.178 4.178 12 C 0.008 3.992 13 F -0.199 7.199 14 C 0.049 3.951 15 H 0.088 0.912 16 C -0.068 4.068 17 N -0.300 5.300 18 C -0.081 4.081 19 C 0.229 3.771 20 O -0.468 6.468 21 N -0.202 5.202 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.181 4.181 25 N -0.544 5.544 26 Si 0.756 3.244 27 H -0.193 1.193 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.064 0.936 31 H 0.136 0.864 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.163 0.837 48 H 0.102 0.898 49 H 0.061 0.939 50 H 0.225 0.775 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 23.145 -7.489 15.230 28.700 hybrid contribution -0.292 -0.419 -1.029 1.149 sum 22.853 -7.908 14.200 28.043 Atomic orbital electron populations 1.22205 0.92376 1.03599 1.03423 1.21429 0.97908 0.98942 0.92505 0.91323 1.21684 0.94256 1.01114 0.98637 1.21937 0.97091 1.01197 0.97195 1.21764 0.98035 0.97310 0.84417 1.48202 1.06813 1.61050 1.18237 1.20589 0.89130 0.77274 0.83028 1.90777 1.73985 1.46437 1.28923 1.21615 0.92786 1.03532 0.99992 1.21933 0.93414 1.04317 0.98164 1.21987 0.92983 0.99795 0.84477 1.92782 1.85696 1.89492 1.51886 1.21420 0.77904 0.99245 0.96520 0.91187 1.22654 0.87353 1.00724 0.96052 1.60520 1.07446 1.26623 1.35393 1.21636 0.95159 1.00272 0.91039 1.19864 0.88663 0.84312 0.84292 1.90506 1.66100 1.51552 1.38672 1.41877 1.07465 1.51967 1.18928 1.19744 0.81602 1.35755 1.05555 0.87901 1.25264 1.00506 0.96934 0.95390 1.69626 1.36100 1.39465 1.09182 0.85812 0.82452 0.77852 0.78285 1.19253 1.20797 1.20831 0.93613 0.86363 0.94248 0.91609 0.91917 0.90843 0.91486 0.91205 0.89783 0.88636 0.88783 0.89828 0.89761 0.90815 0.90842 0.90743 0.91452 0.83669 0.89753 0.93915 0.77458 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.03 37.16 0.30 -1.84 16 2 C -0.09 -0.98 2.34 -90.50 -0.21 -1.19 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.12 -0.99 5.16 -26.68 -0.14 -1.13 16 5 C -0.14 -0.82 6.08 -26.61 -0.16 -0.98 16 6 C 0.11 0.62 6.35 -3.71 -0.02 0.59 16 7 N -0.61 -5.60 2.97 -165.22 -0.49 -6.09 16 8 C 0.51 5.18 7.56 -10.99 -0.08 5.10 16 9 O -0.53 -7.41 11.52 5.56 0.06 -7.34 16 10 C -0.14 -0.82 4.05 -27.88 -0.11 -0.93 16 11 C -0.14 -1.03 4.96 -26.73 -0.13 -1.17 16 12 C 0.06 0.36 7.55 37.15 0.28 0.64 16 13 F -0.22 -2.10 17.36 2.25 0.04 -2.06 16 14 C 0.15 1.75 2.68 -67.60 -0.18 1.57 16 15 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 16 C 0.06 0.88 3.56 -3.82 -0.01 0.86 16 17 N -0.67 -11.10 2.66 -115.05 -0.31 -11.41 16 18 C 0.05 0.98 6.16 -4.97 -0.03 0.95 16 19 C 0.44 10.73 7.82 -10.99 -0.09 10.64 16 20 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 21 N -0.57 -14.80 5.29 -10.96 -0.06 -14.86 16 22 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 23 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 24 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 25 N -0.90 -25.24 13.05 55.50 0.72 -24.51 16 26 Si 0.93 21.49 29.55 -169.99 -5.02 16.47 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 30 H 0.04 0.62 8.10 -51.93 -0.42 0.19 16 31 H 0.12 2.01 5.56 -51.93 -0.29 1.72 16 32 H 0.04 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.27 5.92 -51.93 -0.31 -0.03 16 39 H 0.10 0.38 7.89 -51.93 -0.41 -0.03 16 40 H 0.09 0.34 7.75 -51.93 -0.40 -0.06 16 41 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.08 0.77 8.10 -51.92 -0.42 0.34 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 1.19 7.43 -51.93 -0.39 0.80 16 46 H 0.07 1.08 6.00 -52.01 -0.31 0.77 16 47 H 0.34 5.87 8.05 -39.29 -0.32 5.55 16 48 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 49 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.39 9.94 7.90 -40.82 -0.32 9.61 16 51 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 400.92 15.07 6.04 6.04 Total: -1.00 -33.20 400.92 -8.35 -41.55 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -8.59 Total: 13.00 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -0.84 Total: 4.98 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.13 Total: -56.86 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.15 Total: -23.10 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.20 -8.35 -41.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319854162.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.921 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds