Wall clock time and date at job start Wed Apr 1 2020 03:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49871 * 2 1 4 4 C 1.53043 * 109.49701 * 120.09292 * 2 1 3 5 5 C 1.53047 * 109.53764 * 181.31677 * 4 2 1 6 6 C 1.53188 * 109.31199 * 298.63645 * 5 4 2 7 7 N 1.46932 * 108.77612 * 54.64087 * 6 5 4 8 8 C 1.34772 * 120.63461 * 126.36594 * 7 6 5 9 9 O 1.21280 * 119.99832 * 175.30069 * 8 7 6 10 10 C 1.50700 * 119.99830 * 355.30378 * 8 7 6 11 11 C 1.53002 * 109.47106 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47359 * 179.97438 * 11 10 8 13 13 F 1.39895 * 109.47356 * 180.02562 * 12 11 10 14 14 C 1.46923 * 118.73290 * 306.38414 * 7 6 5 15 15 H 1.08998 * 109.70693 * 293.75328 * 14 7 6 16 16 C 1.53006 * 109.58568 * 173.40040 * 14 7 6 17 17 N 1.46897 * 109.47068 * 178.68721 * 16 14 7 18 18 C 1.46904 * 110.99788 * 184.67284 * 17 16 14 19 19 C 1.50701 * 109.47315 * 179.97438 * 18 17 16 20 20 O 1.21293 * 119.99752 * 359.97438 * 19 18 17 21 21 N 1.34768 * 120.00296 * 180.02562 * 19 18 17 22 22 C 1.37093 * 120.00057 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00357 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99839 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00251 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99701 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47513 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46909 * 120.00672 * 26 24 22 29 29 H 1.48501 * 109.46977 * 239.99974 * 26 24 22 30 30 H 1.08998 * 109.46834 * 171.36869 * 1 2 3 31 31 H 1.09000 * 109.46851 * 51.37739 * 1 2 3 32 32 H 1.08994 * 109.47417 * 291.37461 * 1 2 3 33 33 H 1.08996 * 109.46197 * 301.34169 * 4 2 1 34 34 H 1.09001 * 109.45344 * 61.30031 * 4 2 1 35 35 H 1.08994 * 109.49595 * 178.68578 * 5 4 2 36 36 H 1.08998 * 109.52005 * 58.60824 * 5 4 2 37 37 H 1.08996 * 109.59193 * 294.84590 * 6 5 4 38 38 H 1.09001 * 109.70169 * 174.48742 * 6 5 4 39 39 H 1.08997 * 109.46942 * 299.99533 * 10 8 7 40 40 H 1.08997 * 109.47454 * 60.00279 * 10 8 7 41 41 H 1.08997 * 109.47533 * 300.00225 * 11 10 8 42 42 H 1.09010 * 109.46889 * 59.99839 * 11 10 8 43 43 H 1.09004 * 109.47135 * 300.00234 * 12 11 10 44 44 H 1.09002 * 109.47428 * 60.00038 * 12 11 10 45 45 H 1.09004 * 109.46511 * 298.68057 * 16 14 7 46 46 H 1.08995 * 109.46938 * 58.68074 * 16 14 7 47 47 H 1.00899 * 110.99989 * 308.62066 * 17 16 14 48 48 H 1.09000 * 109.47018 * 299.99652 * 18 17 16 49 49 H 1.08998 * 109.46915 * 59.99552 * 18 17 16 50 50 H 0.96998 * 119.99854 * 359.97438 * 21 19 18 51 51 H 0.96997 * 119.99982 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7234 1.2482 5 6 3.5709 -0.6953 1.2659 6 6 4.1053 -1.4267 0.0305 7 7 3.5047 -0.8287 -1.1697 8 6 4.2812 -0.3849 -2.1779 9 8 3.7726 0.0281 -3.1985 10 6 5.7815 -0.4019 -2.0370 11 6 6.4199 0.1496 -3.3134 12 6 7.9431 0.1330 -3.1702 13 9 8.5268 0.6378 -4.3371 14 6 2.0414 -0.7234 -1.2497 15 1 1.6034 -1.7203 -1.2998 16 6 1.6518 0.0712 -2.4979 17 7 0.1879 0.1480 -2.5923 18 6 -0.2254 0.8088 -3.8375 19 6 -1.7299 0.8685 -3.8992 20 8 -2.3928 0.4057 -2.9949 21 7 -2.3390 1.4353 -4.9594 22 6 -3.7077 1.4891 -5.0157 23 1 -4.2980 1.0770 -4.2106 24 6 -4.3356 2.0739 -6.1086 25 7 -3.6176 2.5749 -7.0885 26 14 -6.2007 2.1479 -6.1849 27 1 -6.7713 1.5197 -4.9664 28 1 -6.6371 3.5652 -6.2614 29 1 -6.6762 1.4181 -7.3877 30 1 -0.3633 -1.0160 -0.1542 31 1 -0.3633 0.6415 -0.8029 32 1 -0.3634 0.3745 0.9569 33 1 1.6581 -0.2250 2.1389 34 1 1.6967 -1.7575 1.2348 35 1 3.9334 -1.1902 2.1668 36 1 3.9163 0.3384 1.2546 37 1 3.8376 -2.4818 0.0862 38 1 5.1898 -1.3267 -0.0152 39 1 6.0737 0.2160 -1.1880 40 1 6.1197 -1.4254 -1.8751 41 1 6.1277 -0.4685 -4.1623 42 1 6.0818 1.1732 -3.4758 43 1 8.2350 0.7514 -2.3214 44 1 8.2816 -0.8903 -3.0076 45 1 2.0649 1.0777 -2.4313 46 1 2.0475 -0.4262 -3.3834 47 1 -0.2281 -0.7679 -2.5137 48 1 0.1801 1.8203 -3.8639 49 1 0.1508 0.2442 -4.6906 50 1 -1.8089 1.8051 -5.6827 51 1 -4.0559 2.9828 -7.8516 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319854162.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:58 Heat of formation + Delta-G solvation = -139.416368 kcal Electronic energy + Delta-G solvation = -30939.797326 eV Core-core repulsion = 26594.591825 eV Total energy + Delta-G solvation = -4345.205501 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.53089 -41.75109 -40.14514 -38.87131 -36.94122 -35.89282 -35.01171 -34.47247 -33.31175 -32.76984 -29.84964 -28.58575 -27.40434 -26.71464 -25.49201 -24.03175 -23.01172 -22.42890 -21.30603 -21.07364 -20.03972 -19.79866 -18.22095 -17.57717 -17.38204 -17.31020 -16.71348 -16.65892 -16.51801 -16.34908 -15.97441 -15.70463 -15.52578 -15.49715 -15.12507 -14.86911 -14.75219 -14.35057 -14.08602 -13.99242 -13.76541 -13.53788 -13.45273 -13.23330 -12.93957 -12.89691 -12.70965 -12.60253 -12.42282 -12.39279 -12.33913 -12.11767 -11.96685 -11.90117 -11.77570 -11.52188 -11.51852 -11.50799 -11.19271 -10.44768 -10.30242 -10.02706 -9.58082 -8.94310 -8.47460 -5.96660 1.35782 1.40361 1.55442 1.64262 1.91354 2.03161 2.28594 2.94224 3.19280 3.40933 3.60197 3.72994 3.75430 3.86543 3.90914 3.95315 4.11821 4.17919 4.25788 4.26650 4.31847 4.34016 4.43655 4.44659 4.53810 4.55957 4.63189 4.67729 4.74466 4.80222 4.90771 4.91286 4.96500 5.01068 5.03190 5.09720 5.18824 5.30275 5.31831 5.35763 5.39903 5.54776 5.60984 5.84466 5.95470 6.06577 6.37432 6.49042 6.58184 7.10831 7.23886 7.54242 8.08725 8.70547 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.011844 B = 0.002371 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.524697 B =11804.384782 C =13988.083908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.080 4.080 3 H 0.055 0.945 4 C -0.117 4.117 5 C -0.130 4.130 6 C 0.101 3.899 7 N -0.607 5.607 8 C 0.500 3.500 9 O -0.577 6.577 10 C -0.127 4.127 11 C -0.138 4.138 12 C 0.060 3.940 13 F -0.243 7.243 14 C 0.156 3.844 15 H 0.070 0.930 16 C 0.075 3.925 17 N -0.665 5.665 18 C 0.066 3.934 19 C 0.443 3.557 20 O -0.615 6.615 21 N -0.575 5.575 22 C -0.331 4.331 23 H 0.081 0.919 24 C -0.017 4.017 25 N -0.923 5.923 26 Si 0.996 3.004 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.270 1.270 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.342 0.658 48 H 0.092 0.908 49 H 0.054 0.946 50 H 0.394 0.606 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.015 -9.187 16.936 32.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 H 0.073 0.927 4 C -0.154 4.154 5 C -0.168 4.168 6 C -0.020 4.020 7 N -0.340 5.340 8 C 0.290 3.710 9 O -0.456 6.456 10 C -0.166 4.166 11 C -0.177 4.177 12 C 0.005 3.995 13 F -0.224 7.224 14 C 0.052 3.948 15 H 0.088 0.912 16 C -0.053 4.053 17 N -0.299 5.299 18 C -0.067 4.067 19 C 0.230 3.770 20 O -0.501 6.501 21 N -0.212 5.212 22 C -0.461 4.461 23 H 0.099 0.901 24 C -0.216 4.216 25 N -0.564 5.564 26 Si 0.820 3.180 27 H -0.196 1.196 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.160 0.840 48 H 0.110 0.890 49 H 0.072 0.928 50 H 0.228 0.772 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 25.267 -8.616 17.182 31.747 hybrid contribution -0.928 -0.074 -1.598 1.850 sum 24.339 -8.689 15.584 30.179 Atomic orbital electron populations 1.22067 0.94496 1.02418 1.02125 1.21303 0.95967 0.98654 0.94065 0.92689 1.21651 0.96412 1.00725 0.96652 1.21923 0.94812 1.01565 0.98537 1.22124 0.99921 0.97528 0.82397 1.48312 1.05468 1.60779 1.19420 1.21445 0.91064 0.76175 0.82284 1.90757 1.75211 1.48689 1.30981 1.21627 0.88893 1.06112 0.99959 1.21860 0.95067 1.02319 0.98425 1.22237 0.91258 1.01940 0.84042 1.92731 1.86012 1.89996 1.53695 1.21197 0.80125 0.98518 0.94940 0.91160 1.22507 0.85265 1.00123 0.97401 1.60584 1.09078 1.26335 1.33896 1.21456 0.91217 1.01315 0.92685 1.20694 0.90672 0.82580 0.83048 1.90474 1.67529 1.52513 1.39599 1.41954 1.07037 1.52642 1.19596 1.19732 0.82707 1.37657 1.05985 0.90055 1.26115 1.05172 0.95812 0.94503 1.69697 1.37955 1.39291 1.09499 0.84826 0.76573 0.78318 0.78326 1.19578 1.19606 1.19557 0.93933 0.89944 0.93871 0.91457 0.91499 0.88049 0.91737 0.90046 0.86193 0.85548 0.85287 0.92240 0.92446 0.88211 0.88028 0.92464 0.92882 0.83965 0.88957 0.92812 0.77215 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 8.03 71.98 0.58 -3.68 16 2 C -0.08 -1.76 2.34 -10.72 -0.03 -1.78 16 3 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.12 -1.68 5.16 30.62 0.16 -1.52 16 5 C -0.13 -1.05 6.08 30.67 0.19 -0.87 16 6 C 0.10 0.73 6.35 86.36 0.55 1.28 16 7 N -0.61 -9.98 2.97 -795.03 -2.36 -12.35 16 8 C 0.50 9.50 7.56 87.66 0.66 10.16 16 9 O -0.58 -16.79 11.52 -3.03 -0.03 -16.82 16 10 C -0.13 -1.07 4.05 29.85 0.12 -0.95 16 11 C -0.14 -1.89 4.96 30.59 0.15 -1.74 16 12 C 0.06 0.54 7.55 71.98 0.54 1.08 16 13 F -0.24 -4.50 17.36 44.97 0.78 -3.72 16 14 C 0.16 3.55 2.68 44.98 0.12 3.67 16 15 H 0.07 1.61 8.13 -2.39 -0.02 1.59 16 16 C 0.07 2.26 3.56 86.31 0.31 2.57 16 17 N -0.67 -23.27 2.66 -517.92 -1.38 -24.65 16 18 C 0.07 2.61 6.16 85.56 0.53 3.13 16 19 C 0.44 22.35 7.82 87.66 0.69 23.03 16 20 O -0.62 -34.84 15.78 -3.07 -0.05 -34.89 16 21 N -0.58 -31.24 5.29 -306.99 -1.62 -32.86 16 22 C -0.33 -19.49 9.68 84.04 0.81 -18.68 16 23 H 0.08 5.05 7.16 -2.91 -0.02 5.03 16 24 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 25 N -0.92 -51.91 13.05 21.66 0.28 -51.63 16 26 Si 1.00 44.23 29.55 68.60 2.03 46.25 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 28 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 29 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 30 H 0.04 1.17 8.10 -2.39 -0.02 1.15 16 31 H 0.08 2.95 5.56 -2.39 -0.01 2.93 16 32 H 0.04 1.13 8.13 -2.39 -0.02 1.11 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.12 0.06 5.92 -2.39 -0.01 0.04 16 39 H 0.13 0.36 7.89 -2.39 -0.02 0.35 16 40 H 0.13 0.26 7.75 -2.39 -0.02 0.24 16 41 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 42 H 0.06 1.08 8.10 -2.38 -0.02 1.06 16 43 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 44 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.06 1.92 7.43 -2.39 -0.02 1.91 16 46 H 0.05 1.80 6.00 -3.60 -0.02 1.77 16 47 H 0.34 12.23 8.05 -89.69 -0.72 11.51 16 48 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 49 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.39 20.70 7.90 -92.71 -0.73 19.97 16 51 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -77.02 400.92 2.97 -74.06 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: -0.52 Total: 41.35 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 5.85 Total: 15.25 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -5.08 Total: -121.48 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: -0.08 Total: -51.71 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.78 Total: -3.72 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -77.02 2.97 -74.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319854162.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.361 kcal (2) G-P(sol) polarization free energy of solvation -77.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds