Wall clock time and date at job start Wed Apr 1 2020 02:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47452 * 2 1 4 4 H 1.09000 * 109.50107 * 55.06604 * 3 2 1 5 5 C 1.53191 * 109.49783 * 295.00140 * 3 2 1 6 6 N 1.46932 * 108.77843 * 294.65261 * 5 3 2 7 7 C 1.34775 * 120.63169 * 126.36742 * 6 5 3 8 8 O 1.21279 * 120.00300 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99773 * 180.02562 * 7 6 5 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 F 1.39905 * 109.47157 * 180.02562 * 11 10 9 13 13 C 1.46931 * 118.73295 * 306.64138 * 6 5 3 14 14 C 1.52764 * 109.00664 * 53.30715 * 13 6 5 15 15 C 1.53034 * 109.38606 * 305.58641 * 14 13 6 16 16 H 1.08997 * 109.45741 * 301.22076 * 15 14 13 17 17 N 1.46899 * 109.44835 * 181.25699 * 15 14 13 18 18 C 1.46895 * 111.00333 * 84.93669 * 17 15 14 19 19 C 1.50696 * 109.47279 * 180.02562 * 18 17 15 20 20 O 1.21293 * 120.00056 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00198 * 180.02562 * 19 18 17 22 22 C 1.37090 * 120.00167 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00258 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00266 * 179.97438 * 22 21 19 25 25 N 1.31419 * 119.99667 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00251 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46939 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47250 * 120.00187 * 26 24 22 29 29 H 1.48503 * 109.47204 * 240.00155 * 26 24 22 30 30 H 1.09003 * 109.46964 * 299.99961 * 1 2 3 31 31 H 1.08998 * 109.47067 * 59.99614 * 1 2 3 32 32 H 1.08994 * 109.47534 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46964 * 240.00039 * 2 1 3 34 34 H 1.08998 * 109.47067 * 120.00386 * 2 1 3 35 35 H 1.09001 * 109.58943 * 174.86102 * 5 3 2 36 36 H 1.09004 * 109.59202 * 54.43734 * 5 3 2 37 37 H 1.09001 * 109.46980 * 59.99839 * 9 7 6 38 38 H 1.08996 * 109.46805 * 299.99819 * 9 7 6 39 39 H 1.09001 * 109.46993 * 59.99687 * 10 9 7 40 40 H 1.09004 * 109.47298 * 300.00102 * 10 9 7 41 41 H 1.09001 * 109.46832 * 60.00325 * 11 10 9 42 42 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 43 43 H 1.08998 * 109.58160 * 173.13884 * 13 6 5 44 44 H 1.08992 * 109.58624 * 293.56843 * 13 6 5 45 45 H 1.09003 * 109.56043 * 185.54393 * 14 13 6 46 46 H 1.09004 * 109.38652 * 65.51882 * 14 13 6 47 47 H 1.00905 * 111.00185 * 320.98067 * 17 15 14 48 48 H 1.08993 * 109.47286 * 300.00208 * 18 17 15 49 49 H 1.09007 * 109.47200 * 59.99742 * 18 17 15 50 50 H 0.97000 * 119.99679 * 359.97438 * 21 19 18 51 51 H 0.96998 * 119.99749 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9816 0.8423 5 6 1.6351 2.1279 -1.3087 6 7 2.3308 1.4692 -2.4227 7 6 1.6409 0.9945 -3.4787 8 8 0.4340 1.1087 -3.5155 9 6 2.3690 0.3208 -4.6132 10 6 1.3603 -0.1221 -5.6749 11 6 2.0996 -0.8055 -6.8270 12 9 1.1773 -1.2100 -7.7982 13 6 3.7924 1.3324 -2.3606 14 6 4.1737 0.6608 -1.0426 15 6 3.5656 1.4455 0.1220 16 1 3.9298 2.4726 0.0972 17 7 3.9563 0.8182 1.3915 18 6 5.2715 1.3000 1.8340 19 6 5.6380 0.6355 3.1360 20 8 4.8785 -0.1616 3.6449 21 7 6.8098 0.9268 3.7349 22 6 7.1434 0.3218 4.9190 23 1 6.4671 -0.3879 5.3722 24 6 8.3517 0.6217 5.5362 25 7 9.1744 1.4857 4.9850 26 14 8.8059 -0.2021 7.1500 27 1 7.7173 -1.1262 7.5576 28 1 10.0662 -0.9682 6.9772 29 1 8.9956 0.8329 8.1980 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.9174 3.1802 -1.2727 36 1 0.5576 2.0412 -1.4486 37 1 2.9041 -0.5503 -4.2351 38 1 3.0790 1.0198 -5.0552 39 1 0.8248 0.7487 -6.0530 40 1 0.6505 -0.8212 -5.2326 41 1 2.6353 -1.6764 -6.4491 42 1 2.8091 -0.1061 -7.2692 43 1 4.1378 0.7208 -3.1941 44 1 4.2542 2.3183 -2.4121 45 1 5.2590 0.6435 -0.9424 46 1 3.7913 -0.3599 -1.0327 47 1 3.9465 -0.1880 1.3158 48 1 6.0199 1.0578 1.0796 49 1 5.2342 2.3803 1.9749 50 1 7.4173 1.5639 3.3277 51 1 10.0176 1.6953 5.4161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323148080.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:52 Heat of formation + Delta-G solvation = -162.791508 kcal Electronic energy + Delta-G solvation = -30625.232791 eV Core-core repulsion = 26279.013669 eV Total energy + Delta-G solvation = -4346.219123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.53805 -41.58060 -40.18325 -39.26659 -36.31960 -35.74670 -35.28454 -34.63901 -33.25541 -31.95124 -30.63830 -28.77845 -27.81763 -26.19674 -25.00756 -24.36278 -23.35772 -22.89826 -21.09908 -20.79287 -19.92145 -19.27938 -18.37295 -17.65251 -17.44997 -17.04586 -16.88764 -16.61319 -16.29038 -16.21035 -16.10930 -15.79786 -15.70452 -15.47138 -15.33267 -15.11767 -14.41654 -14.38476 -14.17520 -14.07709 -13.62765 -13.51407 -13.45724 -13.21235 -13.11146 -12.88426 -12.73269 -12.68844 -12.44651 -12.39872 -12.38122 -12.16704 -12.11516 -11.96306 -11.59341 -11.52919 -11.50637 -11.48286 -11.17289 -10.75311 -10.31199 -9.99794 -9.62143 -9.19425 -8.46228 -5.94293 1.36666 1.42318 1.55936 1.66791 2.03302 2.07744 2.29642 2.94600 3.21577 3.41787 3.53951 3.71853 3.75448 3.86545 3.89886 4.02217 4.09820 4.13429 4.17970 4.28806 4.34262 4.40131 4.41853 4.48575 4.50920 4.58066 4.60990 4.64755 4.69728 4.71989 4.76408 4.78240 4.86577 4.95707 5.00221 5.01790 5.08636 5.22046 5.28101 5.29162 5.37460 5.42201 5.44994 5.62974 5.93992 6.17702 6.43688 6.47706 6.61974 7.14433 7.21702 7.58663 8.14451 8.71251 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.019683 B = 0.001910 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.188024 B =14658.061257 C =15286.641824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.082 4.082 4 H 0.077 0.923 5 C 0.116 3.884 6 N -0.605 5.605 7 C 0.508 3.492 8 O -0.587 6.587 9 C -0.132 4.132 10 C -0.135 4.135 11 C 0.058 3.942 12 F -0.242 7.242 13 C 0.111 3.889 14 C -0.166 4.166 15 C 0.095 3.905 16 H 0.089 0.911 17 N -0.677 5.677 18 C 0.068 3.932 19 C 0.437 3.563 20 O -0.625 6.625 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.275 1.275 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.343 0.657 48 H 0.071 0.929 49 H 0.103 0.897 50 H 0.397 0.603 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.400 1.715 -23.353 24.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.102 4.102 4 H 0.095 0.905 5 C -0.007 4.007 6 N -0.337 5.337 7 C 0.298 3.702 8 O -0.468 6.468 9 C -0.171 4.171 10 C -0.174 4.174 11 C 0.004 3.996 12 F -0.223 7.223 13 C -0.011 4.011 14 C -0.206 4.206 15 C -0.015 4.015 16 H 0.107 0.893 17 N -0.308 5.308 18 C -0.064 4.064 19 C 0.224 3.776 20 O -0.512 6.512 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.200 1.200 28 H -0.195 1.195 29 H -0.197 1.197 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.133 0.867 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.085 0.915 47 H 0.162 0.838 48 H 0.089 0.911 49 H 0.121 0.879 50 H 0.231 0.769 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.699 1.765 -22.586 24.267 hybrid contribution 0.881 -0.538 0.498 1.146 sum -7.818 1.226 -22.088 23.463 Atomic orbital electron populations 1.21765 0.96181 1.01272 1.01368 1.21413 0.95532 0.96539 1.01076 1.21438 0.95058 0.96660 0.97048 0.90463 1.21648 0.98254 0.96164 0.84635 1.48184 1.08493 1.57730 1.19326 1.21218 0.87348 0.77737 0.83906 1.90691 1.16399 1.59396 1.80275 1.21628 0.99106 1.03126 0.93261 1.21836 0.98581 1.01338 0.95635 1.22237 0.89656 1.01510 0.86221 1.92731 1.70506 1.92715 1.66346 1.21832 0.78173 1.02731 0.98361 1.22617 1.01941 1.00438 0.95587 1.21630 0.94588 0.98871 0.86363 0.89252 1.60140 1.27464 1.12346 1.30839 1.21546 0.91624 1.00452 0.92825 1.21005 0.82078 0.85580 0.88902 1.90501 1.52234 1.40030 1.68424 1.41934 1.17662 1.40182 1.21340 1.19673 1.03395 1.23284 0.99835 0.90530 1.25997 0.95267 0.97343 1.02628 1.69669 1.11145 1.34031 1.41179 0.84905 0.78104 0.78091 0.77449 1.19980 1.19548 1.19709 0.92928 0.92974 0.93272 0.92315 0.92806 0.90233 0.90215 0.86125 0.85344 0.91815 0.92299 0.88570 0.88103 0.86702 0.89260 0.89588 0.91485 0.83794 0.91083 0.87935 0.76915 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.68 71.98 0.70 -2.63 16 2 C -0.11 -2.38 4.67 30.59 0.14 -2.23 16 3 C -0.08 -1.63 2.38 -10.72 -0.03 -1.65 16 4 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 5 C 0.12 2.03 5.70 86.36 0.49 2.52 16 6 N -0.60 -8.67 2.34 -819.71 -1.92 -10.59 16 7 C 0.51 8.65 7.70 87.66 0.67 9.33 16 8 O -0.59 -15.49 15.39 -3.03 -0.05 -15.53 16 9 C -0.13 -1.07 4.05 29.85 0.12 -0.95 16 10 C -0.14 -1.67 4.96 30.59 0.15 -1.52 16 11 C 0.06 0.50 7.55 71.98 0.54 1.04 16 12 F -0.24 -4.17 17.36 44.97 0.78 -3.39 16 13 C 0.11 0.95 6.31 86.22 0.54 1.50 16 14 C -0.17 -2.24 4.97 30.53 0.15 -2.09 16 15 C 0.10 1.80 2.13 44.94 0.10 1.90 16 16 H 0.09 1.54 7.80 -2.39 -0.02 1.52 16 17 N -0.68 -19.03 5.42 -495.47 -2.69 -21.71 16 18 C 0.07 2.08 5.96 85.56 0.51 2.59 16 19 C 0.44 19.93 7.82 87.66 0.69 20.62 16 20 O -0.63 -33.97 15.78 -3.07 -0.05 -34.02 16 21 N -0.57 -28.51 5.29 -306.98 -1.62 -30.13 16 22 C -0.33 -18.58 9.68 84.04 0.81 -17.76 16 23 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 25 N -0.92 -48.51 13.05 21.67 0.28 -48.23 16 26 Si 0.99 42.40 29.55 68.60 2.03 44.43 16 27 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 29 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.23 6.46 -2.39 -0.02 1.22 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.24 6.13 -2.39 -0.01 1.22 16 34 H 0.05 1.41 7.01 -2.39 -0.02 1.39 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.73 5.20 -2.39 -0.01 1.72 16 37 H 0.12 0.47 7.68 -2.39 -0.02 0.45 16 38 H 0.13 0.28 7.95 -2.39 -0.02 0.26 16 39 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 40 H 0.06 0.99 8.10 -2.38 -0.02 0.97 16 41 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 43 H 0.11 0.33 5.93 -2.39 -0.01 0.32 16 44 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.09 1.08 7.42 -2.39 -0.02 1.06 16 46 H 0.07 1.04 6.45 -2.39 -0.02 1.02 16 47 H 0.34 10.50 7.34 -89.69 -0.66 9.84 16 48 H 0.07 1.81 7.41 -2.39 -0.02 1.79 16 49 H 0.10 2.85 8.06 -2.38 -0.02 2.83 16 50 H 0.40 18.55 7.90 -92.71 -0.73 17.81 16 51 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -74.88 401.96 2.40 -72.48 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.43 Total: 36.24 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 6.07 Total: 10.46 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -5.94 Total: -110.67 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.10 Total: -49.56 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -74.88 2.40 -72.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323148080.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.315 kcal (2) G-P(sol) polarization free energy of solvation -74.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds