Wall clock time and date at job start Wed Apr 1 2020 02:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46960 * 2 1 4 4 H 1.09004 * 109.52624 * 305.08025 * 3 2 1 5 5 C 1.53190 * 109.50880 * 65.15480 * 3 2 1 6 6 N 1.46929 * 108.76869 * 65.30325 * 5 3 2 7 7 C 1.34772 * 120.63082 * 233.63834 * 6 5 3 8 8 O 1.21281 * 120.00183 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00016 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47233 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47203 * 179.97438 * 10 9 7 12 12 F 1.39894 * 109.47286 * 179.97438 * 11 10 9 13 13 C 1.46925 * 118.73749 * 53.61227 * 6 5 3 14 14 C 1.53193 * 108.77727 * 306.39982 * 13 6 5 15 15 C 1.53039 * 109.49726 * 185.00079 * 3 2 1 16 16 H 1.09006 * 109.45975 * 181.40599 * 15 3 2 17 17 N 1.46896 * 109.46392 * 61.43320 * 15 3 2 18 18 C 1.46899 * 111.00338 * 154.97025 * 17 15 3 19 19 C 1.50698 * 109.46987 * 179.97438 * 18 17 15 20 20 O 1.21293 * 120.00006 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99773 * 179.72591 * 21 19 18 23 23 H 1.08002 * 119.99671 * 0.27660 * 22 21 19 24 24 C 1.38950 * 120.00030 * 180.27703 * 22 21 19 25 25 N 1.31414 * 119.99926 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99969 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47425 * 90.00231 * 26 24 22 28 28 H 1.48499 * 109.47218 * 210.00087 * 26 24 22 29 29 H 1.48505 * 109.47256 * 330.00093 * 26 24 22 30 30 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47343 * 299.99978 * 1 2 3 32 32 H 1.09001 * 109.47476 * 60.00444 * 1 2 3 33 33 H 1.09000 * 109.47343 * 240.00022 * 2 1 3 34 34 H 1.09002 * 109.46753 * 119.99728 * 2 1 3 35 35 H 1.09004 * 109.58896 * 305.52081 * 5 3 2 36 36 H 1.09010 * 109.71505 * 185.16096 * 5 3 2 37 37 H 1.09011 * 109.47041 * 300.00165 * 9 7 6 38 38 H 1.09003 * 109.47283 * 59.99759 * 9 7 6 39 39 H 1.08994 * 109.47298 * 300.00186 * 10 9 7 40 40 H 1.09003 * 109.46895 * 60.00354 * 10 9 7 41 41 H 1.09000 * 109.47645 * 300.00258 * 11 10 9 42 42 H 1.09003 * 109.46683 * 59.99881 * 11 10 9 43 43 H 1.08991 * 109.58872 * 186.60748 * 13 6 5 44 44 H 1.08999 * 109.58438 * 66.18022 * 13 6 5 45 45 H 1.09003 * 109.49218 * 294.68190 * 14 13 6 46 46 H 1.09000 * 109.52724 * 174.60307 * 14 13 6 47 47 H 1.00898 * 110.99977 * 278.93267 * 17 15 3 48 48 H 1.09003 * 109.46477 * 60.00383 * 18 17 15 49 49 H 1.08993 * 109.47002 * 300.00709 * 18 17 15 50 50 H 0.97001 * 120.00485 * 0.02562 * 21 19 18 51 51 H 0.96999 * 119.99863 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 -0.8407 5 6 1.6385 2.1270 1.3103 6 7 2.3364 1.4666 2.4219 7 6 1.6486 0.9912 3.4789 8 8 0.4420 1.1069 3.5191 9 6 2.3789 0.3157 4.6109 10 6 1.3724 -0.1277 5.6745 11 6 2.1138 -0.8141 6.8236 12 9 1.1936 -1.2190 7.7963 13 6 3.7983 1.3339 2.3589 14 6 4.1756 0.6586 1.0366 15 6 3.5652 1.4450 -0.1258 16 1 3.9299 2.4720 -0.1006 17 7 3.9525 0.8192 -1.3970 18 6 5.2666 1.3016 -1.8425 19 6 5.6296 0.6385 -3.1462 20 8 4.8683 -0.1572 -3.6544 21 7 6.7997 0.9306 -3.7478 22 6 7.1326 0.3232 -4.9310 23 1 6.4550 -0.3860 -5.3832 24 6 8.3415 0.6199 -5.5484 25 7 9.1661 1.4825 -4.9978 26 14 8.7946 -0.2071 -7.1608 27 1 8.2987 0.6136 -8.2946 28 1 10.2710 -0.3373 -7.2526 29 1 8.1743 -1.5553 -7.2171 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5612 2.0408 1.4525 36 1 1.9194 3.1798 1.2763 37 1 2.9127 -0.5553 4.2306 38 1 3.0905 1.0138 5.0521 39 1 0.8384 0.7429 6.0549 40 1 0.6613 -0.8260 5.2330 41 1 2.6476 -1.6849 6.4430 42 1 2.8253 -0.1162 7.2651 43 1 4.1461 0.7244 3.1928 44 1 4.2573 2.3213 2.4088 45 1 3.7919 -0.3616 1.0268 46 1 5.2605 0.6403 0.9334 47 1 3.9429 -0.1870 -1.3224 48 1 6.0170 1.0583 -1.0902 49 1 5.2289 2.3819 -1.9819 50 1 7.4084 1.5673 -3.3415 51 1 10.0099 1.6899 -5.4290 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323148082.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:57 Heat of formation + Delta-G solvation = -140.479593 kcal Electronic energy + Delta-G solvation = -30622.882530 eV Core-core repulsion = 26277.630925 eV Total energy + Delta-G solvation = -4345.251605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -47.97721 -40.83641 -38.83343 -37.97499 -35.18978 -34.64434 -34.02549 -33.74786 -31.33759 -30.96350 -29.83106 -27.95223 -26.62041 -24.81130 -24.05161 -23.42763 -22.62611 -22.23067 -20.09636 -19.36550 -18.50353 -17.92137 -17.61479 -16.97010 -16.47900 -16.11515 -15.99216 -15.59995 -15.31550 -15.08797 -15.06553 -14.94620 -14.61041 -14.28960 -13.90914 -13.82497 -13.66895 -13.61009 -13.21166 -12.86093 -12.72313 -12.48673 -12.20214 -12.13571 -11.96181 -11.94118 -11.72743 -11.61329 -11.54343 -11.42594 -11.38762 -11.09241 -11.07215 -10.72503 -10.57101 -10.42059 -10.32398 -10.24150 -10.01325 -9.53911 -8.91636 -8.49241 -8.07413 -7.98762 -6.44926 -3.85708 2.33759 2.65984 3.15575 3.24441 3.30084 3.87354 3.93954 4.04014 4.23827 4.26059 4.30366 4.39949 4.54106 4.61384 4.72720 4.74862 4.75897 4.83610 4.94878 4.99906 5.08690 5.11680 5.19101 5.21745 5.26735 5.37960 5.44887 5.46331 5.49916 5.51868 5.54364 5.70917 5.74990 5.78254 5.83819 5.85958 5.96843 6.07007 6.13163 6.20062 6.23938 6.37806 6.41801 7.09959 7.19333 7.52280 7.61196 7.88683 8.03270 8.57970 9.14926 9.51061 10.02464 10.72758 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.001910 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.477924 B =14655.291618 C =15284.202425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.088 4.088 4 H 0.091 0.909 5 C 0.112 3.888 6 N -0.607 5.607 7 C 0.516 3.484 8 O -0.540 6.540 9 C -0.140 4.140 10 C -0.138 4.138 11 C 0.061 3.939 12 F -0.218 7.218 13 C 0.111 3.889 14 C -0.172 4.172 15 C 0.093 3.907 16 H 0.078 0.922 17 N -0.660 5.660 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.350 0.650 48 H 0.042 0.958 49 H 0.085 0.915 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.328 1.173 21.836 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.108 4.108 4 H 0.109 0.891 5 C -0.011 4.011 6 N -0.341 5.341 7 C 0.304 3.696 8 O -0.417 6.417 9 C -0.180 4.180 10 C -0.177 4.177 11 C 0.006 3.994 12 F -0.199 7.199 13 C -0.013 4.013 14 C -0.211 4.211 15 C -0.017 4.017 16 H 0.096 0.904 17 N -0.291 5.291 18 C -0.082 4.082 19 C 0.225 3.775 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.170 0.830 48 H 0.060 0.940 49 H 0.103 0.897 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.655 1.195 21.049 23.622 hybrid contribution 1.559 -0.381 -0.021 1.605 sum -9.096 0.815 21.028 22.925 Atomic orbital electron populations 1.21821 0.96062 1.01419 1.01770 1.21502 0.95715 0.96037 1.01968 1.21529 0.95039 0.97421 0.96804 0.89062 1.21795 0.98978 0.95438 0.84868 1.48102 1.07531 1.58385 1.20059 1.20509 0.87711 0.78315 0.83073 1.90706 1.14201 1.57628 1.79191 1.21591 0.99417 1.01900 0.95082 1.21916 0.98467 1.02507 0.94780 1.22004 0.90107 1.00096 0.87155 1.92775 1.69518 1.92395 1.65239 1.21717 0.79729 1.01305 0.98509 1.22775 1.01724 1.01080 0.95569 1.21570 0.94704 0.98299 0.87170 0.90355 1.60176 1.28503 1.12662 1.27795 1.21706 0.90049 1.00449 0.95992 1.19826 0.83537 0.86669 0.87440 1.90529 1.51049 1.38287 1.66844 1.41868 1.16794 1.39778 1.21610 1.19703 1.02755 1.22295 0.98131 0.87934 1.25262 0.95806 0.97058 0.99832 1.69610 1.10810 1.33805 1.40107 0.85856 0.77428 0.79638 0.81364 1.20377 1.20941 1.19434 0.93244 0.92440 0.92736 0.90828 0.92685 0.88447 0.91565 0.88494 0.88560 0.89955 0.89903 0.90671 0.90733 0.89789 0.90961 0.90716 0.90477 0.82978 0.93976 0.89669 0.77496 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.68 37.16 0.36 -1.31 16 2 C -0.11 -1.26 4.67 -26.73 -0.12 -1.38 16 3 C -0.09 -0.90 2.38 -90.50 -0.22 -1.12 16 4 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 5 C 0.11 1.04 5.70 -3.71 -0.02 1.02 16 6 N -0.61 -5.07 2.33 -172.77 -0.40 -5.48 16 7 C 0.52 4.83 7.70 -10.99 -0.08 4.74 16 8 O -0.54 -7.08 15.39 5.56 0.09 -6.99 16 9 C -0.14 -0.79 4.05 -27.88 -0.11 -0.91 16 10 C -0.14 -0.94 4.96 -26.73 -0.13 -1.07 16 11 C 0.06 0.34 7.55 37.16 0.28 0.62 16 12 F -0.22 -1.98 17.36 2.25 0.04 -1.94 16 13 C 0.11 0.71 6.34 -3.71 -0.02 0.68 16 14 C -0.17 -1.43 4.99 -26.61 -0.13 -1.56 16 15 C 0.09 0.98 2.13 -67.67 -0.14 0.84 16 16 H 0.08 0.80 7.80 -51.93 -0.40 0.40 16 17 N -0.66 -9.63 5.42 -107.95 -0.59 -10.22 16 18 C 0.05 0.82 5.97 -4.98 -0.03 0.79 16 19 C 0.44 10.02 7.82 -10.99 -0.09 9.93 16 20 O -0.58 -15.46 15.78 5.55 0.09 -15.38 16 21 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 22 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 26 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.65 6.46 -51.93 -0.34 0.32 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.94 7.00 -51.93 -0.36 0.57 16 34 H 0.05 0.60 6.13 -51.93 -0.32 0.28 16 35 H 0.10 1.05 5.21 -51.93 -0.27 0.78 16 36 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 37 H 0.10 0.40 7.69 -51.92 -0.40 0.00 16 38 H 0.10 0.35 7.94 -51.93 -0.41 -0.07 16 39 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.08 0.36 5.93 -51.93 -0.31 0.05 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.67 6.45 -51.93 -0.33 0.34 16 46 H 0.08 0.64 7.42 -51.93 -0.39 0.26 16 47 H 0.35 5.42 7.33 -39.29 -0.29 5.13 16 48 H 0.04 0.60 7.41 -51.93 -0.38 0.22 16 49 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 50 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 51 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -32.93 401.99 -8.04 -40.97 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -8.26 Total: 11.18 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -0.71 Total: 3.39 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.32 Total: -53.06 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.17 Total: -22.37 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.93 -8.04 -40.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323148082.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.512 kcal (2) G-P(sol) polarization free energy of solvation -32.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds