Wall clock time and date at job start Wed Apr 1 2020 02:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46960 * 2 1 4 4 H 1.09004 * 109.52624 * 305.08025 * 3 2 1 5 5 C 1.53190 * 109.50880 * 65.15480 * 3 2 1 6 6 N 1.46929 * 108.76869 * 65.30325 * 5 3 2 7 7 C 1.34772 * 120.63082 * 233.63834 * 6 5 3 8 8 O 1.21281 * 120.00183 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00016 * 179.97438 * 7 6 5 10 10 C 1.52998 * 109.47233 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47203 * 179.97438 * 10 9 7 12 12 F 1.39894 * 109.47286 * 179.97438 * 11 10 9 13 13 C 1.46925 * 118.73749 * 53.61227 * 6 5 3 14 14 C 1.53193 * 108.77727 * 306.39982 * 13 6 5 15 15 C 1.53039 * 109.49726 * 185.00079 * 3 2 1 16 16 H 1.09006 * 109.45975 * 181.40599 * 15 3 2 17 17 N 1.46896 * 109.46392 * 61.43320 * 15 3 2 18 18 C 1.46899 * 111.00338 * 154.97025 * 17 15 3 19 19 C 1.50698 * 109.46987 * 179.97438 * 18 17 15 20 20 O 1.21293 * 120.00006 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99773 * 179.72591 * 21 19 18 23 23 H 1.08002 * 119.99671 * 0.27660 * 22 21 19 24 24 C 1.38950 * 120.00030 * 180.27703 * 22 21 19 25 25 N 1.31414 * 119.99926 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99969 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47425 * 90.00231 * 26 24 22 28 28 H 1.48499 * 109.47218 * 210.00087 * 26 24 22 29 29 H 1.48505 * 109.47256 * 330.00093 * 26 24 22 30 30 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47343 * 299.99978 * 1 2 3 32 32 H 1.09001 * 109.47476 * 60.00444 * 1 2 3 33 33 H 1.09000 * 109.47343 * 240.00022 * 2 1 3 34 34 H 1.09002 * 109.46753 * 119.99728 * 2 1 3 35 35 H 1.09004 * 109.58896 * 305.52081 * 5 3 2 36 36 H 1.09010 * 109.71505 * 185.16096 * 5 3 2 37 37 H 1.09011 * 109.47041 * 300.00165 * 9 7 6 38 38 H 1.09003 * 109.47283 * 59.99759 * 9 7 6 39 39 H 1.08994 * 109.47298 * 300.00186 * 10 9 7 40 40 H 1.09003 * 109.46895 * 60.00354 * 10 9 7 41 41 H 1.09000 * 109.47645 * 300.00258 * 11 10 9 42 42 H 1.09003 * 109.46683 * 59.99881 * 11 10 9 43 43 H 1.08991 * 109.58872 * 186.60748 * 13 6 5 44 44 H 1.08999 * 109.58438 * 66.18022 * 13 6 5 45 45 H 1.09003 * 109.49218 * 294.68190 * 14 13 6 46 46 H 1.09000 * 109.52724 * 174.60307 * 14 13 6 47 47 H 1.00898 * 110.99977 * 278.93267 * 17 15 3 48 48 H 1.09003 * 109.46477 * 60.00383 * 18 17 15 49 49 H 1.08993 * 109.47002 * 300.00709 * 18 17 15 50 50 H 0.97001 * 120.00485 * 0.02562 * 21 19 18 51 51 H 0.96999 * 119.99863 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 -0.8407 5 6 1.6385 2.1270 1.3103 6 7 2.3364 1.4666 2.4219 7 6 1.6486 0.9912 3.4789 8 8 0.4420 1.1069 3.5191 9 6 2.3789 0.3157 4.6109 10 6 1.3724 -0.1277 5.6745 11 6 2.1138 -0.8141 6.8236 12 9 1.1936 -1.2190 7.7963 13 6 3.7983 1.3339 2.3589 14 6 4.1756 0.6586 1.0366 15 6 3.5652 1.4450 -0.1258 16 1 3.9299 2.4720 -0.1006 17 7 3.9525 0.8192 -1.3970 18 6 5.2666 1.3016 -1.8425 19 6 5.6296 0.6385 -3.1462 20 8 4.8683 -0.1572 -3.6544 21 7 6.7997 0.9306 -3.7478 22 6 7.1326 0.3232 -4.9310 23 1 6.4550 -0.3860 -5.3832 24 6 8.3415 0.6199 -5.5484 25 7 9.1661 1.4825 -4.9978 26 14 8.7946 -0.2071 -7.1608 27 1 8.2987 0.6136 -8.2946 28 1 10.2710 -0.3373 -7.2526 29 1 8.1743 -1.5553 -7.2171 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5612 2.0408 1.4525 36 1 1.9194 3.1798 1.2763 37 1 2.9127 -0.5553 4.2306 38 1 3.0905 1.0138 5.0521 39 1 0.8384 0.7429 6.0549 40 1 0.6613 -0.8260 5.2330 41 1 2.6476 -1.6849 6.4430 42 1 2.8253 -0.1162 7.2651 43 1 4.1461 0.7244 3.1928 44 1 4.2573 2.3213 2.4088 45 1 3.7919 -0.3616 1.0268 46 1 5.2605 0.6403 0.9334 47 1 3.9429 -0.1870 -1.3224 48 1 6.0170 1.0583 -1.0902 49 1 5.2289 2.3819 -1.9819 50 1 7.4084 1.5673 -3.3415 51 1 10.0099 1.6899 -5.4290 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323148082.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:56 Heat of formation + Delta-G solvation = -162.699342 kcal Electronic energy + Delta-G solvation = -30623.846051 eV Core-core repulsion = 26277.630925 eV Total energy + Delta-G solvation = -4346.215126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -48.54035 -41.57393 -40.18130 -39.26145 -36.31808 -35.74541 -35.27986 -34.63588 -33.25420 -31.93193 -30.63352 -28.77361 -27.81635 -26.19349 -25.00553 -24.36952 -23.36037 -22.89671 -21.09750 -20.78905 -19.91908 -19.28260 -18.37080 -17.65099 -17.44987 -17.04531 -16.88584 -16.61028 -16.28943 -16.21010 -16.10939 -15.79588 -15.70350 -15.47007 -15.33123 -15.11270 -14.41583 -14.38151 -14.17379 -14.07552 -13.62529 -13.50700 -13.45276 -13.21027 -13.10985 -12.88166 -12.73054 -12.68405 -12.44550 -12.40641 -12.38725 -12.17362 -12.11663 -11.96316 -11.59278 -11.52928 -11.50071 -11.48248 -11.17207 -10.75310 -10.31066 -9.99769 -9.62131 -9.19359 -8.45891 -5.94073 1.38253 1.42354 1.54436 1.66837 2.03347 2.07978 2.29771 2.94652 3.21847 3.41841 3.54045 3.72061 3.75416 3.86627 3.89895 4.02173 4.09452 4.13479 4.17999 4.28813 4.34237 4.40074 4.41834 4.48482 4.50870 4.57970 4.60900 4.64784 4.69737 4.72024 4.76508 4.78311 4.86375 4.95712 5.00236 5.01773 5.08667 5.22063 5.28104 5.29201 5.37558 5.42063 5.45007 5.62979 5.94040 6.17730 6.43737 6.47736 6.62139 7.14452 7.21715 7.58783 8.14561 8.71329 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.019652 B = 0.001910 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.477924 B =14655.291618 C =15284.202425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.082 4.082 4 H 0.077 0.923 5 C 0.116 3.884 6 N -0.605 5.605 7 C 0.508 3.492 8 O -0.587 6.587 9 C -0.132 4.132 10 C -0.135 4.135 11 C 0.058 3.942 12 F -0.242 7.242 13 C 0.111 3.889 14 C -0.166 4.166 15 C 0.095 3.905 16 H 0.089 0.911 17 N -0.677 5.677 18 C 0.068 3.932 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.574 5.574 22 C -0.333 4.333 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.089 0.911 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.343 0.657 48 H 0.071 0.929 49 H 0.103 0.897 50 H 0.397 0.603 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.343 1.705 23.361 24.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.102 4.102 4 H 0.095 0.905 5 C -0.007 4.007 6 N -0.337 5.337 7 C 0.298 3.702 8 O -0.468 6.468 9 C -0.171 4.171 10 C -0.174 4.174 11 C 0.004 3.996 12 F -0.223 7.223 13 C -0.011 4.011 14 C -0.206 4.206 15 C -0.015 4.015 16 H 0.107 0.893 17 N -0.308 5.308 18 C -0.064 4.064 19 C 0.224 3.776 20 O -0.512 6.512 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.133 0.867 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.162 0.838 48 H 0.089 0.911 49 H 0.121 0.879 50 H 0.231 0.769 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.638 1.755 22.598 24.256 hybrid contribution 0.870 -0.537 -0.501 1.139 sum -7.768 1.218 22.096 23.454 Atomic orbital electron populations 1.21766 0.96184 1.01269 1.01362 1.21414 0.95530 0.96537 1.01077 1.21435 0.95071 0.96658 0.97016 0.90465 1.21645 0.98231 0.96139 0.84681 1.48182 1.08499 1.57691 1.19370 1.21218 0.87367 0.77774 0.83860 1.90692 1.16426 1.59442 1.80212 1.21630 0.99102 1.03112 0.93282 1.21835 0.98585 1.01321 0.95647 1.22234 0.89703 1.01486 0.86200 1.92728 1.70628 1.92698 1.66240 1.21922 0.78144 1.02710 0.98321 1.22691 1.01907 1.00399 0.95559 1.21632 0.94602 0.98877 0.86351 0.89258 1.60138 1.27620 1.12376 1.30654 1.21547 0.91643 1.00460 0.92797 1.21002 0.82115 0.85563 0.88902 1.90500 1.52080 1.40099 1.68515 1.41932 1.17727 1.40117 1.21320 1.19638 1.03337 1.23336 0.99956 0.90522 1.25993 0.95240 0.97368 1.02613 1.69661 1.11055 1.34128 1.41146 0.84963 0.77639 0.78370 0.77586 1.19827 1.19486 1.19886 0.93274 0.92989 0.92922 0.92802 0.92309 0.90239 0.90233 0.86125 0.85341 0.91809 0.92308 0.88571 0.88107 0.86689 0.89233 0.91469 0.89636 0.83798 0.91096 0.87936 0.76913 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.68 71.98 0.70 -2.63 16 2 C -0.11 -2.38 4.67 30.59 0.14 -2.23 16 3 C -0.08 -1.62 2.38 -10.72 -0.03 -1.65 16 4 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 5 C 0.12 2.03 5.70 86.36 0.49 2.53 16 6 N -0.61 -8.67 2.33 -818.90 -1.91 -10.58 16 7 C 0.51 8.65 7.70 87.66 0.67 9.33 16 8 O -0.59 -15.50 15.39 -3.03 -0.05 -15.54 16 9 C -0.13 -1.08 4.05 29.85 0.12 -0.95 16 10 C -0.14 -1.67 4.96 30.59 0.15 -1.52 16 11 C 0.06 0.50 7.55 71.98 0.54 1.04 16 12 F -0.24 -4.17 17.36 44.97 0.78 -3.39 16 13 C 0.11 0.95 6.34 86.36 0.55 1.50 16 14 C -0.17 -2.24 4.99 30.67 0.15 -2.08 16 15 C 0.10 1.80 2.13 44.94 0.10 1.90 16 16 H 0.09 1.54 7.80 -2.38 -0.02 1.52 16 17 N -0.68 -19.04 5.42 -495.45 -2.69 -21.72 16 18 C 0.07 2.09 5.97 85.56 0.51 2.60 16 19 C 0.44 19.93 7.82 87.66 0.69 20.61 16 20 O -0.63 -33.96 15.78 -3.07 -0.05 -34.01 16 21 N -0.57 -28.50 5.29 -306.98 -1.62 -30.12 16 22 C -0.33 -18.61 9.68 84.04 0.81 -17.80 16 23 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 24 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 25 N -0.92 -48.49 13.05 21.66 0.28 -48.21 16 26 Si 0.99 42.38 29.55 68.60 2.03 44.40 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 29 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.23 6.46 -2.39 -0.02 1.21 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.41 7.00 -2.39 -0.02 1.39 16 34 H 0.06 1.24 6.13 -2.39 -0.01 1.22 16 35 H 0.08 1.72 5.21 -2.39 -0.01 1.71 16 36 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.12 0.47 7.69 -2.38 -0.02 0.45 16 38 H 0.13 0.28 7.94 -2.39 -0.02 0.26 16 39 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 40 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 41 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.12 0.33 5.93 -2.39 -0.01 0.32 16 44 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.07 1.04 6.45 -2.39 -0.02 1.03 16 46 H 0.09 1.07 7.42 -2.39 -0.02 1.06 16 47 H 0.34 10.51 7.33 -89.70 -0.66 9.85 16 48 H 0.07 1.81 7.41 -2.39 -0.02 1.79 16 49 H 0.10 2.85 8.05 -2.39 -0.02 2.83 16 50 H 0.40 18.55 7.90 -92.71 -0.73 17.82 16 51 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -74.79 401.99 2.41 -72.37 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: -0.43 Total: 36.35 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 6.07 Total: 10.45 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -5.93 Total: -110.63 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.10 Total: -49.55 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -74.79 2.41 -72.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323148082.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.329 kcal (2) G-P(sol) polarization free energy of solvation -74.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds