Wall clock time and date at job start Wed Apr 1 2020 02:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50692 * 120.00095 * 2 1 4 4 N 1.46501 * 109.47044 * 124.99888 * 3 2 1 5 5 C 1.46498 * 120.00105 * 85.91931 * 4 3 2 6 6 C 1.50697 * 109.47552 * 89.99669 * 5 4 3 7 7 H 1.08002 * 120.00009 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00095 * 179.72662 * 6 5 4 9 9 N 1.31519 * 120.00361 * 180.27806 * 8 6 5 10 10 Si 1.86803 * 119.99956 * 0.27168 * 8 6 5 11 11 H 1.48504 * 109.46782 * 90.00225 * 10 8 6 12 12 H 1.48498 * 109.47211 * 210.00187 * 10 8 6 13 13 H 1.48498 * 109.47151 * 330.00084 * 10 8 6 14 14 C 1.34780 * 119.99632 * 265.91135 * 4 3 2 15 15 O 1.21276 * 120.00567 * 5.51501 * 14 4 3 16 16 C 1.50701 * 119.99696 * 185.50883 * 14 4 3 17 17 H 1.09001 * 109.46433 * 34.56572 * 16 14 4 18 18 C 1.53040 * 109.46505 * 274.58780 * 16 14 4 19 19 C 1.53120 * 109.28012 * 180.79193 * 18 16 14 20 20 C 1.53117 * 109.15011 * 57.67343 * 19 18 16 21 21 C 1.53041 * 109.27779 * 302.33952 * 20 19 18 22 22 N 1.46845 * 109.46115 * 154.54413 * 16 14 4 23 23 C 1.46899 * 111.00127 * 305.85408 * 22 16 14 24 24 C 1.50704 * 109.46967 * 163.69482 * 23 22 16 25 25 C 1.38645 * 120.78936 * 269.72249 * 24 23 22 26 26 C 1.38213 * 119.15900 * 179.75503 * 25 24 23 27 27 N 1.31869 * 120.76495 * 0.53271 * 26 25 24 28 28 C 1.31869 * 121.72375 * 359.73973 * 27 26 25 29 29 C 1.38204 * 120.76516 * 359.97438 * 28 27 26 30 30 H 1.07996 * 119.99789 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.00230 * 180.02562 * 1 2 3 32 32 H 1.08006 * 119.99763 * 179.97438 * 2 1 3 33 33 H 1.09001 * 109.47385 * 4.99987 * 3 2 1 34 34 H 1.08999 * 109.47187 * 244.99887 * 3 2 1 35 35 H 1.09005 * 109.46753 * 329.99426 * 5 4 3 36 36 H 1.09000 * 109.46783 * 209.99912 * 5 4 3 37 37 H 0.96996 * 120.00117 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.50179 * 300.74910 * 18 16 14 39 39 H 1.09001 * 109.50183 * 60.86466 * 18 16 14 40 40 H 1.09000 * 109.53110 * 297.76838 * 19 18 16 41 41 H 1.08999 * 109.57368 * 177.60364 * 19 18 16 42 42 H 1.08995 * 109.50314 * 182.39886 * 20 19 18 43 43 H 1.08994 * 109.53776 * 62.29794 * 20 19 18 44 44 H 1.09002 * 109.46164 * 299.16268 * 21 20 19 45 45 H 1.09004 * 109.46558 * 179.19988 * 21 20 19 46 46 H 1.08997 * 109.47378 * 283.69788 * 23 22 16 47 47 H 1.08994 * 109.46984 * 43.69995 * 23 22 16 48 48 H 1.07999 * 120.42498 * 0.02562 * 25 24 23 49 49 H 1.07997 * 119.61274 * 180.29193 * 26 25 24 50 50 H 1.07997 * 119.61729 * 179.97438 * 28 27 26 51 51 H 1.08003 * 120.41453 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.3290 0.7445 0.9960 6 6 5.2921 1.7942 0.5046 7 1 4.9445 2.7986 0.3127 8 6 6.6183 1.4740 0.3057 9 7 7.4600 2.3915 -0.1180 10 14 7.2198 -0.2630 0.6383 11 1 7.0956 -1.0751 -0.5988 12 1 8.6423 -0.2215 1.0625 13 1 6.3997 -0.8731 1.7155 14 6 2.6211 1.8969 2.2969 15 8 1.4843 2.2933 2.4426 16 6 3.6172 2.0361 3.4192 17 1 4.6068 2.2285 3.0048 18 6 3.6492 0.7423 4.2361 19 6 4.6479 0.8954 5.3866 20 6 4.2431 2.0958 6.2467 21 6 4.1936 3.3505 5.3717 22 7 3.2241 3.1541 4.2864 23 6 3.0482 4.3875 3.5080 24 6 2.2755 5.3910 4.3248 25 6 0.8915 5.4422 4.2620 26 6 0.2165 6.3726 5.0294 27 7 0.8742 7.2114 5.8058 28 6 2.1904 7.1950 5.8863 29 6 2.9322 6.2887 5.1526 30 1 -0.5399 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3586 2.1316 0.0896 34 1 2.6213 1.4025 -0.9314 35 1 4.2932 -0.0785 0.2822 36 1 4.6616 0.3712 1.9646 37 1 8.3929 2.1661 -0.2582 38 1 2.6567 0.5421 4.6396 39 1 3.9561 -0.0847 3.5958 40 1 5.6472 1.0572 4.9827 41 1 4.6434 -0.0078 5.9967 42 1 4.9741 2.2360 7.0429 43 1 3.2601 1.9171 6.6824 44 1 5.1804 3.5369 4.9480 45 1 3.8918 4.2045 5.9781 46 1 4.0249 4.7998 3.2549 47 1 2.4998 4.1644 2.5929 48 1 0.3473 4.7607 3.6249 49 1 -0.8619 6.4158 4.9897 50 1 2.6944 7.8979 6.5330 51 1 4.0099 6.2800 5.2231 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324289504.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:39 Heat of formation + Delta-G solvation = 12.747245 kcal Electronic energy + Delta-G solvation = -31620.279606 eV Core-core repulsion = 27712.441640 eV Total energy + Delta-G solvation = -3907.837966 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73378 -40.90248 -39.12892 -37.12498 -35.59994 -35.14859 -34.04203 -32.86081 -32.21921 -31.88524 -29.96452 -28.16536 -27.24688 -25.02476 -24.63151 -24.25013 -23.95206 -22.47183 -21.15490 -20.73647 -19.88117 -19.04813 -18.17440 -17.64795 -17.56564 -17.27585 -16.63570 -16.46117 -16.31767 -15.92022 -15.77268 -15.23699 -15.18577 -15.07399 -14.83153 -14.57912 -14.52245 -14.42714 -14.10852 -14.00864 -13.81935 -13.65528 -13.23815 -13.08146 -13.02925 -12.72868 -12.49226 -12.37440 -12.30486 -12.14890 -11.94164 -11.82827 -11.71470 -11.63916 -11.35509 -10.84153 -10.73677 -10.53951 -10.44688 -10.21045 -10.04527 -9.47167 -9.35642 -8.32392 -6.39858 0.21572 0.26979 1.27249 1.37901 1.39476 1.48381 1.66844 2.28552 2.31873 2.73173 3.01490 3.10395 3.52156 3.59739 3.69177 3.77339 3.83032 3.99571 4.01188 4.14107 4.17368 4.21553 4.23262 4.24309 4.35501 4.38190 4.51249 4.55692 4.56166 4.65980 4.71557 4.73641 4.73959 4.83045 4.83997 4.91399 4.97127 5.01668 5.04864 5.06226 5.15032 5.18773 5.41442 5.42304 5.47564 5.60788 5.66426 5.77853 5.81788 5.90347 6.05282 6.15072 6.57996 6.66475 7.02234 7.22328 7.33490 8.83547 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009809 B = 0.004168 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.917351 B = 6715.728099 C = 7776.991339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.179 4.179 3 C 0.142 3.858 4 N -0.594 5.594 5 C 0.215 3.785 6 C -0.538 4.538 7 H 0.028 0.972 8 C 0.023 3.977 9 N -0.940 5.940 10 Si 0.934 3.066 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.234 1.234 14 C 0.521 3.479 15 O -0.564 6.564 16 C 0.072 3.928 17 H 0.059 0.941 18 C -0.101 4.101 19 C -0.117 4.117 20 C -0.108 4.108 21 C 0.048 3.952 22 N -0.509 5.509 23 C 0.092 3.908 24 C -0.030 4.030 25 C -0.156 4.156 26 C 0.093 3.907 27 N -0.507 5.507 28 C 0.094 3.906 29 C -0.169 4.169 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.049 0.951 37 H 0.268 0.732 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.029 0.971 45 H 0.088 0.912 46 H 0.035 0.965 47 H 0.068 0.932 48 H 0.127 0.873 49 H 0.176 0.824 50 H 0.183 0.817 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.006 -1.807 11.335 13.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C 0.020 3.980 4 N -0.324 5.324 5 C 0.093 3.907 6 C -0.577 4.577 7 H 0.046 0.954 8 C -0.176 4.176 9 N -0.579 5.579 10 Si 0.756 3.244 11 H -0.190 1.190 12 H -0.210 1.210 13 H -0.157 1.157 14 C 0.309 3.691 15 O -0.444 6.444 16 C -0.040 4.040 17 H 0.077 0.923 18 C -0.140 4.140 19 C -0.155 4.155 20 C -0.146 4.146 21 C -0.079 4.079 22 N -0.235 5.235 23 C -0.036 4.036 24 C -0.038 4.038 25 C -0.176 4.176 26 C -0.063 4.063 27 N -0.216 5.216 28 C -0.062 4.062 29 C -0.189 4.189 30 H 0.112 0.888 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.107 0.893 46 H 0.053 0.947 47 H 0.086 0.914 48 H 0.145 0.855 49 H 0.193 0.807 50 H 0.200 0.800 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.315 -1.090 12.042 15.263 hybrid contribution 2.040 -0.731 -1.728 2.772 sum -7.275 -1.821 10.314 12.752 Atomic orbital electron populations 1.23962 0.95281 1.02606 0.98431 1.23227 0.96676 0.98120 1.01790 1.20485 0.91936 0.96402 0.89208 1.47972 1.15479 1.57311 1.11626 1.19719 0.79188 0.93596 0.98209 1.21448 0.93723 0.96932 1.45592 0.95364 1.25731 0.96535 1.01494 0.93823 1.70047 1.04776 1.36183 1.46932 0.85918 0.78320 0.79714 0.80443 1.19024 1.21001 1.15666 1.20581 0.88386 0.76612 0.83508 1.90565 1.21079 1.50734 1.81997 1.21605 0.96115 0.94366 0.91868 0.92302 1.21542 1.01236 0.93821 0.97357 1.21596 0.97866 0.99811 0.96218 1.21564 1.02655 0.92897 0.97448 1.22345 0.92645 1.00192 0.92705 1.61730 1.47802 1.02621 1.11311 1.20983 0.97702 0.89176 0.95695 1.20122 0.94322 0.94288 0.95114 1.22119 0.94528 0.99944 1.01058 1.23042 1.01366 0.90462 0.91460 1.67714 1.10630 1.23854 1.19448 1.23146 0.89441 0.96773 0.96848 1.22241 1.02147 0.96733 0.97822 0.88810 0.86270 0.86715 0.91148 0.90310 0.93855 0.93301 0.92291 0.91035 0.91049 0.92371 0.89079 0.88989 0.91139 0.95291 0.89335 0.94669 0.91384 0.85475 0.80728 0.79971 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 14.32 67.78 0.97 -3.24 16 2 C -0.18 -5.30 9.85 25.64 0.25 -5.04 16 3 C 0.14 5.07 5.85 85.63 0.50 5.57 16 4 N -0.59 -23.61 2.44 -830.52 -2.03 -25.64 16 5 C 0.21 9.00 3.85 85.63 0.33 9.33 16 6 C -0.54 -27.89 9.15 25.60 0.23 -27.66 16 7 H 0.03 1.70 8.06 -2.91 -0.02 1.67 16 8 C 0.02 1.23 5.47 84.65 0.46 1.70 16 9 N -0.94 -54.51 13.96 21.45 0.30 -54.21 16 10 Si 0.93 38.59 27.47 68.60 1.88 40.48 16 11 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 12 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 13 H -0.23 -8.50 6.54 99.48 0.65 -7.85 16 14 C 0.52 20.77 5.65 87.66 0.50 21.26 16 15 O -0.56 -23.96 14.70 -3.02 -0.04 -24.00 16 16 C 0.07 2.58 1.41 44.19 0.06 2.65 16 17 H 0.06 2.47 6.50 -2.39 -0.02 2.46 16 18 C -0.10 -3.03 5.14 30.65 0.16 -2.87 16 19 C -0.12 -2.82 6.00 30.67 0.18 -2.64 16 20 C -0.11 -2.41 6.09 30.65 0.19 -2.22 16 21 C 0.05 1.30 5.25 86.33 0.45 1.75 16 22 N -0.51 -16.77 4.19 -880.03 -3.69 -20.46 16 23 C 0.09 3.18 4.77 85.56 0.41 3.59 16 24 C -0.03 -0.89 5.08 -19.67 -0.10 -0.99 16 25 C -0.16 -4.53 9.82 22.36 0.22 -4.32 16 26 C 0.09 2.36 11.18 84.68 0.95 3.31 16 27 N -0.51 -13.22 10.36 -195.84 -2.03 -15.25 16 28 C 0.09 2.14 11.18 84.68 0.95 3.09 16 29 C -0.17 -4.16 8.26 22.36 0.18 -3.97 16 30 H 0.09 2.44 7.84 -2.91 -0.02 2.41 16 31 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.11 3.18 8.06 -2.91 -0.02 3.15 16 33 H 0.07 2.59 7.03 -2.39 -0.02 2.57 16 34 H 0.08 2.86 8.10 -2.39 -0.02 2.85 16 35 H 0.04 1.72 7.51 -2.38 -0.02 1.70 16 36 H 0.05 1.95 4.10 -2.39 -0.01 1.94 16 37 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.07 2.13 6.45 -2.39 -0.02 2.12 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.09 2.15 5.95 -2.39 -0.01 2.14 16 46 H 0.04 1.27 8.01 -2.39 -0.02 1.25 16 47 H 0.07 2.74 5.52 -2.39 -0.01 2.73 16 48 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 49 H 0.18 3.44 8.06 -2.91 -0.02 3.41 16 50 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 51 H 0.15 3.04 7.85 -2.91 -0.02 3.02 16 Total: -1.00 -65.16 402.56 2.14 -63.02 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: 0.85 Total: 36.77 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 6.90 Total: -0.70 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -7.45 Total: -115.56 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.04 Total: -24.00 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 1.88 Total: 40.48 kcal Total: -65.16 2.14 -63.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324289504.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.765 kcal (2) G-P(sol) polarization free energy of solvation -65.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds