Wall clock time and date at job start Wed Apr 1 2020 02:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00484 * 2 1 4 4 N 1.46497 * 109.46866 * 122.42873 * 3 2 1 5 5 C 1.46497 * 120.00278 * 275.63899 * 4 3 2 6 6 C 1.50709 * 109.47038 * 270.00301 * 5 4 3 7 7 H 1.07995 * 120.00006 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99710 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00256 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99785 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46910 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47410 * 120.00086 * 10 8 6 13 13 H 1.48498 * 109.46897 * 240.00128 * 10 8 6 14 14 C 1.34777 * 120.00065 * 95.64283 * 4 3 2 15 15 O 1.21275 * 120.00523 * 175.36841 * 14 4 3 16 16 C 1.50699 * 119.99734 * 355.36699 * 14 4 3 17 17 H 1.09002 * 109.46574 * 321.86670 * 16 14 4 18 18 C 1.53040 * 109.45318 * 81.84181 * 16 14 4 19 19 C 1.53129 * 109.27579 * 179.19016 * 18 16 14 20 20 C 1.53117 * 109.15267 * 302.33550 * 19 18 16 21 21 C 1.53038 * 109.27557 * 57.67350 * 20 19 18 22 22 N 1.46846 * 109.46482 * 201.88893 * 16 14 4 23 23 C 1.46903 * 110.99956 * 54.15283 * 22 16 14 24 24 C 1.50695 * 109.46780 * 59.61961 * 23 22 16 25 25 C 1.38653 * 120.78762 * 263.60493 * 24 23 22 26 26 C 1.38203 * 119.16329 * 179.76043 * 25 24 23 27 27 N 1.31874 * 120.76508 * 0.52635 * 26 25 24 28 28 C 1.31871 * 121.72483 * 359.74261 * 27 26 25 29 29 C 1.38201 * 120.76148 * 359.97438 * 28 27 26 30 30 H 1.08001 * 119.99884 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.00522 * 179.97438 * 1 2 3 32 32 H 1.08005 * 119.99448 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.46451 * 2.43426 * 3 2 1 34 34 H 1.08997 * 109.46820 * 242.42938 * 3 2 1 35 35 H 1.08998 * 109.46929 * 30.00232 * 5 4 3 36 36 H 1.09004 * 109.47186 * 150.00190 * 5 4 3 37 37 H 0.97002 * 119.99890 * 179.97438 * 9 8 6 38 38 H 1.08996 * 109.50476 * 299.12585 * 18 16 14 39 39 H 1.09000 * 109.50250 * 59.25122 * 18 16 14 40 40 H 1.08994 * 109.52256 * 62.25115 * 19 18 16 41 41 H 1.09007 * 109.51834 * 182.37538 * 19 18 16 42 42 H 1.08997 * 109.51278 * 297.73089 * 20 19 18 43 43 H 1.09005 * 109.49361 * 177.60663 * 20 19 18 44 44 H 1.08997 * 109.46339 * 180.79123 * 21 20 19 45 45 H 1.09005 * 109.46474 * 60.81243 * 21 20 19 46 46 H 1.08998 * 109.46724 * 179.61249 * 23 22 16 47 47 H 1.08991 * 109.47200 * 299.61703 * 23 22 16 48 48 H 1.08005 * 120.41744 * 0.02562 * 25 24 23 49 49 H 1.08003 * 119.61966 * 180.29488 * 26 25 24 50 50 H 1.07997 * 119.62217 * 179.97438 * 28 27 26 51 51 H 1.08000 * 120.42093 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9491 1.3575 1.1658 5 6 2.4297 1.8037 2.4609 6 6 2.5972 3.2965 2.5820 7 1 3.0462 3.8567 1.7752 8 6 2.1773 3.9470 3.7229 9 7 1.6311 3.2647 4.7056 10 14 2.3844 5.7974 3.8728 11 1 3.0217 6.3256 2.6398 12 1 1.0538 6.4314 4.0533 13 1 3.2429 6.1061 5.0444 14 6 4.2419 0.9953 1.0469 15 8 4.9952 1.1180 1.9894 16 6 4.7513 0.4378 -0.2572 17 1 3.9900 -0.2047 -0.6996 18 6 5.0665 1.5890 -1.2151 19 6 5.6027 1.0189 -2.5313 20 6 6.8433 0.1692 -2.2423 21 6 6.4765 -0.9409 -1.2548 22 7 5.9697 -0.3444 -0.0123 23 6 5.7378 -1.3740 1.0096 24 6 4.6433 -2.3016 0.5486 25 6 3.3329 -2.1133 0.9608 26 6 2.3549 -2.9813 0.5135 27 7 2.6580 -3.9844 -0.2870 28 6 3.8939 -4.1971 -0.6948 29 6 4.9234 -3.3671 -0.2933 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8499 -0.9354 0.0004 33 1 1.3560 2.1330 0.0436 34 1 2.6571 1.3818 -0.9110 35 1 1.3723 1.5495 2.5353 36 1 2.9793 1.3101 3.2624 37 1 1.3360 3.7223 5.5084 38 1 4.1586 2.1600 -1.4090 39 1 5.8177 2.2396 -0.7674 40 1 4.8373 0.3993 -2.9985 41 1 5.8682 1.8369 -3.2011 42 1 7.6223 0.7975 -1.8106 43 1 7.2048 -0.2740 -3.1703 44 1 7.3609 -1.5392 -1.0361 45 1 5.7070 -1.5768 -1.6926 46 1 6.6541 -1.9430 1.1664 47 1 5.4411 -0.8980 1.9441 48 1 3.0790 -1.2960 1.6197 49 1 1.3310 -2.8386 0.8262 50 1 4.1041 -5.0294 -1.3501 51 1 5.9337 -3.5466 -0.6303 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324289505.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:44 Heat of formation + Delta-G solvation = 17.078454 kcal Electronic energy + Delta-G solvation = -32514.614386 eV Core-core repulsion = 28606.964235 eV Total energy + Delta-G solvation = -3907.650151 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.11692 -40.74430 -39.09357 -37.29490 -35.61427 -35.14743 -33.73163 -32.61691 -32.54294 -32.01995 -29.53986 -28.05673 -26.97156 -25.75237 -24.81819 -24.18324 -23.77676 -22.75381 -21.36233 -20.52798 -19.99491 -18.64940 -18.02366 -17.76785 -17.45814 -17.24935 -16.77889 -16.58486 -16.26385 -16.04580 -15.83633 -15.52120 -15.18189 -14.97489 -14.65772 -14.56838 -14.47717 -14.26953 -14.02859 -13.97630 -13.78831 -13.41541 -13.26974 -13.02872 -12.89894 -12.76611 -12.60213 -12.37295 -12.34955 -12.24935 -12.13281 -11.81632 -11.68560 -11.62988 -11.37089 -10.69449 -10.65253 -10.59018 -10.36388 -10.33833 -10.05223 -9.47457 -9.29743 -8.22719 -6.36595 0.11655 0.15888 1.27248 1.34517 1.37076 1.48567 1.78049 2.26262 2.40897 2.73624 2.99974 3.07157 3.48599 3.52727 3.57967 3.75107 3.82258 3.93904 4.03656 4.08752 4.10081 4.12177 4.16674 4.21450 4.25458 4.32153 4.43628 4.58556 4.60950 4.73983 4.75312 4.79008 4.80901 4.89336 4.94200 4.97492 5.00908 5.02225 5.04960 5.17070 5.20361 5.23806 5.33396 5.45690 5.51433 5.66499 5.70757 5.73885 5.86467 5.94534 6.06556 6.11973 6.69834 6.77077 6.94986 7.28651 7.48510 8.84385 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011538 B = 0.004348 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.094947 B = 6438.545376 C = 7478.469793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.203 4.203 3 C 0.130 3.870 4 N -0.594 5.594 5 C 0.270 3.730 6 C -0.538 4.538 7 H 0.050 0.950 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.964 3.036 11 H -0.268 1.268 12 H -0.269 1.269 13 H -0.283 1.283 14 C 0.507 3.493 15 O -0.573 6.573 16 C 0.085 3.915 17 H 0.067 0.933 18 C -0.114 4.114 19 C -0.112 4.112 20 C -0.115 4.115 21 C 0.048 3.952 22 N -0.516 5.516 23 C 0.082 3.918 24 C -0.081 4.081 25 C -0.172 4.172 26 C 0.094 3.906 27 N -0.499 5.499 28 C 0.096 3.904 29 C -0.151 4.151 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.021 0.979 36 H -0.005 1.005 37 H 0.266 0.734 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.047 0.953 46 H 0.109 0.891 47 H 0.065 0.935 48 H 0.105 0.895 49 H 0.159 0.841 50 H 0.189 0.811 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.784 -13.280 -18.981 23.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.221 4.221 3 C 0.007 3.993 4 N -0.325 5.325 5 C 0.149 3.851 6 C -0.577 4.577 7 H 0.069 0.931 8 C -0.188 4.188 9 N -0.567 5.567 10 Si 0.788 3.212 11 H -0.192 1.192 12 H -0.194 1.194 13 H -0.208 1.208 14 C 0.295 3.705 15 O -0.452 6.452 16 C -0.027 4.027 17 H 0.085 0.915 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.153 4.153 21 C -0.078 4.078 22 N -0.239 5.239 23 C -0.046 4.046 24 C -0.091 4.091 25 C -0.193 4.193 26 C -0.062 4.062 27 N -0.209 5.209 28 C -0.061 4.061 29 C -0.171 4.171 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.039 0.961 36 H 0.013 0.987 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.065 0.935 46 H 0.127 0.873 47 H 0.083 0.917 48 H 0.123 0.877 49 H 0.176 0.824 50 H 0.206 0.794 51 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.808 -13.390 -18.412 23.495 hybrid contribution -0.297 1.345 1.271 1.874 sum 5.511 -12.045 -17.141 21.662 Atomic orbital electron populations 1.24050 0.95420 1.02898 0.97791 1.23745 0.97182 0.98870 1.02334 1.20875 0.93718 0.96390 0.88276 1.48159 1.09185 1.63825 1.11309 1.18634 0.92887 0.93550 0.80048 1.21697 1.39897 0.93599 1.02462 0.93124 1.25791 0.94612 1.03401 0.95043 1.70055 1.41882 1.37655 1.07105 0.85427 0.78171 0.79498 0.78083 1.19233 1.19412 1.20847 1.20959 0.81544 0.77869 0.90108 1.90622 1.56121 1.55820 1.42652 1.21507 0.92387 0.96674 0.92133 0.91516 1.21672 1.01766 0.95927 0.95810 1.21573 0.98169 1.00335 0.94824 1.21634 0.97614 0.96932 0.99114 1.22420 1.00188 0.96822 0.88390 1.62019 1.28354 1.22885 1.10640 1.21406 0.96691 0.90622 0.95844 1.21198 0.95303 0.96335 0.96222 1.22122 0.94617 1.00910 1.01658 1.22776 0.99862 0.90059 0.93459 1.67746 1.22835 1.18965 1.11306 1.23345 0.87254 0.98625 0.96900 1.22340 1.02527 0.94289 0.97916 0.88283 0.86494 0.86216 0.90530 0.88425 0.96111 0.98685 0.92492 0.90803 0.92535 0.90982 0.89728 0.91932 0.88402 0.88448 0.93505 0.87265 0.91688 0.87669 0.82365 0.79416 0.81755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 14.32 67.79 0.97 -3.21 16 2 C -0.20 -5.83 9.19 25.65 0.24 -5.59 16 3 C 0.13 4.31 5.45 85.63 0.47 4.77 16 4 N -0.59 -25.47 2.30 -830.51 -1.91 -27.38 16 5 C 0.27 14.65 5.14 85.64 0.44 15.09 16 6 C -0.54 -31.33 9.39 25.60 0.24 -31.09 16 7 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 8 C 0.01 0.61 5.46 84.65 0.46 1.07 16 9 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 10 Si 0.96 45.56 29.54 68.60 2.03 47.58 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 14 C 0.51 21.37 4.65 87.66 0.41 21.78 16 15 O -0.57 -29.95 14.28 -3.02 -0.04 -29.99 16 16 C 0.08 2.59 0.79 44.19 0.04 2.62 16 17 H 0.07 1.92 5.48 -2.39 -0.01 1.91 16 18 C -0.11 -3.05 5.09 30.65 0.16 -2.90 16 19 C -0.11 -2.00 6.00 30.68 0.18 -1.81 16 20 C -0.12 -1.86 6.09 30.65 0.19 -1.67 16 21 C 0.05 0.88 4.52 86.33 0.39 1.27 16 22 N -0.52 -14.27 4.45 -880.06 -3.92 -18.19 16 23 C 0.08 2.33 5.11 85.55 0.44 2.77 16 24 C -0.08 -2.01 4.00 -19.67 -0.08 -2.09 16 25 C -0.17 -4.95 6.46 22.36 0.14 -4.81 16 26 C 0.09 2.42 9.47 84.68 0.80 3.22 16 27 N -0.50 -11.83 10.36 -195.84 -2.03 -13.86 16 28 C 0.10 1.72 11.18 84.68 0.95 2.67 16 29 C -0.15 -2.69 7.95 22.36 0.18 -2.51 16 30 H 0.10 2.52 7.84 -2.91 -0.02 2.50 16 31 H 0.12 2.45 8.06 -2.91 -0.02 2.42 16 32 H 0.12 3.34 2.97 -2.91 -0.01 3.33 16 33 H 0.08 2.66 7.76 -2.39 -0.02 2.64 16 34 H 0.10 2.74 4.58 -2.39 -0.01 2.73 16 35 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 36 H 0.00 -0.31 7.49 -2.38 -0.02 -0.33 16 37 H 0.27 15.19 8.31 -92.71 -0.77 14.41 16 38 H 0.07 1.95 6.29 -2.39 -0.02 1.93 16 39 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.10 1.40 8.08 -2.39 -0.02 1.38 16 45 H 0.05 0.78 6.22 -2.38 -0.01 0.77 16 46 H 0.11 2.52 8.08 -2.39 -0.02 2.50 16 47 H 0.06 2.50 5.63 -2.39 -0.01 2.48 16 48 H 0.11 3.77 6.47 -2.91 -0.02 3.75 16 49 H 0.16 3.74 7.97 -2.91 -0.02 3.72 16 50 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 51 H 0.16 1.85 7.67 -2.91 -0.02 1.83 16 Total: -1.00 -75.51 389.36 1.94 -73.57 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.93 Total: 24.81 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 6.61 Total: -0.40 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -7.58 Total: -115.58 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.04 Total: -29.99 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.51 1.94 -73.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324289505.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.653 kcal (2) G-P(sol) polarization free energy of solvation -75.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds