Wall clock time and date at job start Wed Apr 1 2020 01:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46956 * 2 1 4 4 C 1.52997 * 109.47313 * 119.99841 * 2 1 3 5 5 H 1.08998 * 109.47478 * 305.32935 * 4 2 1 6 6 F 1.39900 * 109.47114 * 185.32480 * 4 2 1 7 7 C 1.50702 * 109.46880 * 65.33001 * 4 2 1 8 8 O 1.21279 * 120.00377 * 65.65687 * 7 4 2 9 9 N 1.34780 * 119.99890 * 245.65654 * 7 4 2 10 10 C 1.46501 * 119.99791 * 179.97438 * 9 7 4 11 11 H 1.08998 * 109.57134 * 35.25108 * 10 9 7 12 12 C 1.54524 * 109.57300 * 275.00112 * 10 9 7 13 13 C 1.45878 * 111.66625 * 162.96233 * 12 10 9 14 14 C 1.53983 * 112.67247 * 61.49977 * 13 12 10 15 15 N 1.44304 * 108.30954 * 278.59129 * 14 13 12 16 16 C 1.46897 * 111.00036 * 221.34963 * 15 14 13 17 17 C 1.50706 * 109.46898 * 293.95433 * 16 15 14 18 18 O 1.21289 * 119.99526 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99745 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99548 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00446 * 359.97438 * 20 19 17 22 22 C 1.38955 * 120.00111 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99670 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00222 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47107 * 60.00346 * 24 22 20 26 26 H 1.48502 * 109.46998 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47511 * 299.99991 * 24 22 20 28 28 C 1.47944 * 113.64330 * 95.39736 * 15 14 13 29 29 C 1.50536 * 109.56961 * 155.62820 * 10 9 7 30 30 H 1.09003 * 109.46937 * 299.99543 * 1 2 3 31 31 H 1.09000 * 109.47741 * 59.99892 * 1 2 3 32 32 H 1.08998 * 109.47326 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46937 * 240.00457 * 2 1 3 34 34 H 1.08995 * 109.47010 * 185.02055 * 3 2 1 35 35 H 1.08997 * 109.46881 * 305.01894 * 3 2 1 36 36 H 1.08996 * 109.46960 * 65.01986 * 3 2 1 37 37 H 0.96999 * 119.99830 * 0.02562 * 9 7 4 38 38 H 1.09003 * 109.04234 * 283.52696 * 12 10 9 39 39 H 1.08995 * 109.03858 * 42.47545 * 12 10 9 40 40 H 1.09008 * 108.83932 * 182.32126 * 13 12 10 41 41 H 1.08996 * 108.84385 * 300.77334 * 13 12 10 42 42 H 1.08996 * 109.69621 * 38.29759 * 14 13 12 43 43 H 1.08994 * 109.69332 * 158.88943 * 14 13 12 44 44 H 1.09003 * 109.47416 * 53.95229 * 16 15 14 45 45 H 1.08995 * 109.47322 * 173.95528 * 16 15 14 46 46 H 0.96996 * 120.00463 * 359.97438 * 19 17 16 47 47 H 0.96998 * 120.00299 * 179.97438 * 23 22 20 48 48 H 1.08994 * 108.70803 * 79.13515 * 28 15 14 49 49 H 1.08998 * 108.70814 * 197.14296 * 28 15 14 50 50 H 1.09002 * 108.78944 * 332.45382 * 29 10 9 51 51 H 1.08995 * 108.79154 * 90.66658 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6009 -0.2655 2.1367 6 9 3.4336 -0.6161 1.3120 7 6 1.6483 -2.1750 1.1850 8 8 2.1177 -2.8922 0.3270 9 7 0.7764 -2.6782 2.0811 10 6 0.3952 -4.0914 2.0183 11 1 1.2507 -4.6864 1.6987 12 6 -0.7647 -4.2705 1.0132 13 6 -0.9185 -5.6643 0.6111 14 6 -1.2541 -6.5900 1.7950 15 7 -0.0264 -6.9092 2.4830 16 6 0.0065 -8.3255 2.8713 17 6 -1.0610 -8.5888 3.9019 18 8 -1.7783 -7.6853 4.2764 19 7 -1.2179 -9.8280 4.4081 20 6 -2.1887 -10.0673 5.3461 21 1 -2.8275 -9.2628 5.6797 22 6 -2.3510 -11.3450 5.8677 23 7 -1.5735 -12.3238 5.4622 24 14 -3.6732 -11.6710 7.1462 25 1 -5.0048 -11.3449 6.5754 26 1 -3.6397 -13.1027 7.5390 27 1 -3.4260 -10.8246 8.3410 28 6 0.2475 -6.0346 3.6444 29 6 -0.0628 -4.5509 3.3767 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1262 1.4439 -0.0899 35 1 1.6050 1.9816 -0.8416 36 1 1.7519 1.9297 0.9315 37 1 0.4007 -2.1045 2.7672 38 1 -1.6912 -3.9292 1.4748 39 1 -0.5648 -3.6663 0.1283 40 1 -1.7185 -5.7317 -0.1263 41 1 0.0108 -6.0033 0.1534 42 1 -1.9359 -6.0819 2.4768 43 1 -1.7170 -7.5051 1.4260 44 1 -0.1741 -8.9471 1.9942 45 1 0.9836 -8.5646 3.2910 46 1 -0.6441 -10.5505 4.1089 47 1 -1.6864 -13.2156 5.8265 48 1 -0.3568 -6.3719 4.4864 49 1 1.2998 -6.1289 3.9126 50 1 0.4316 -3.9463 4.1370 51 1 -1.1391 -4.3977 3.4548 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327141861.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:26 Heat of formation + Delta-G solvation = -152.746454 kcal Electronic energy + Delta-G solvation = -31158.713837 eV Core-core repulsion = 26812.930301 eV Total energy + Delta-G solvation = -4345.783536 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -48.92927 -41.38572 -40.61571 -39.02139 -36.64802 -36.47786 -35.72699 -34.18015 -33.32662 -32.63998 -29.63369 -28.55209 -27.92477 -26.88320 -25.97020 -25.04561 -22.40287 -21.65413 -21.52519 -21.13726 -20.63813 -19.79986 -18.82577 -17.87959 -17.77932 -17.22145 -17.04620 -16.75381 -16.55528 -16.09359 -15.96249 -15.71224 -15.54809 -15.36373 -15.07838 -14.95497 -14.63470 -14.17809 -14.09794 -13.95008 -13.87393 -13.64911 -13.48725 -13.33402 -13.03819 -13.01620 -12.68374 -12.48328 -12.44357 -12.32399 -12.16072 -12.14241 -12.05779 -11.97681 -11.80738 -11.66109 -11.62065 -11.53543 -11.35699 -10.80430 -10.76544 -10.13110 -10.00626 -8.97790 -8.46414 -5.96713 1.36399 1.36980 1.39698 1.50350 1.91248 2.01581 2.27870 2.97542 3.19375 3.25983 3.32790 3.45271 3.69405 3.70757 3.80212 3.88237 4.11919 4.15125 4.17350 4.23357 4.37297 4.41529 4.44711 4.49237 4.52710 4.57134 4.66974 4.78646 4.79960 4.88236 4.89762 4.95308 4.97026 4.98427 5.13712 5.14283 5.17318 5.23717 5.30070 5.32724 5.36455 5.38902 5.45139 5.54038 5.91616 6.07732 6.30463 6.42222 6.57359 7.09680 7.10194 7.54599 8.08090 8.68533 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.029870 B = 0.001958 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.181289 B =14295.521342 C =14304.350158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.144 4.144 4 C 0.085 3.915 5 H 0.140 0.860 6 F -0.204 7.204 7 C 0.491 3.509 8 O -0.567 6.567 9 N -0.702 5.702 10 C 0.159 3.841 11 H 0.074 0.926 12 C -0.112 4.112 13 C -0.105 4.105 14 C 0.070 3.930 15 N -0.516 5.516 16 C 0.052 3.948 17 C 0.409 3.591 18 O -0.620 6.620 19 N -0.571 5.571 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.272 1.272 28 C 0.049 3.951 29 C -0.112 4.112 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.417 0.583 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.039 0.961 43 H 0.050 0.950 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.046 0.954 49 H 0.067 0.933 50 H 0.092 0.908 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.367 24.426 -8.676 26.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C -0.201 4.201 4 C 0.046 3.954 5 H 0.157 0.843 6 F -0.185 7.185 7 C 0.276 3.724 8 O -0.446 6.446 9 N -0.354 5.354 10 C 0.054 3.946 11 H 0.092 0.908 12 C -0.150 4.150 13 C -0.143 4.143 14 C -0.058 4.058 15 N -0.239 5.239 16 C -0.079 4.079 17 C 0.196 3.804 18 O -0.508 6.508 19 N -0.207 5.207 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.079 4.079 29 C -0.151 4.151 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.255 0.745 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.064 0.936 49 H 0.085 0.915 50 H 0.111 0.889 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.635 24.398 -9.298 26.518 hybrid contribution -0.912 -1.184 1.355 2.018 sum 3.723 23.214 -7.943 24.816 Atomic orbital electron populations 1.21835 0.92043 1.02185 1.04403 1.21625 0.98317 0.97820 0.95543 1.21802 1.01206 0.93251 1.03847 1.21926 0.77010 0.92291 1.04207 0.84283 1.92844 1.31151 1.96641 1.97878 1.21410 0.78997 0.90705 0.81293 1.90737 1.55003 1.61699 1.37113 1.46115 1.44891 1.11620 1.32777 1.20599 0.97678 0.80773 0.95550 0.90780 1.20822 0.98065 0.97183 0.98974 1.20374 1.02208 0.94587 0.97178 1.21702 0.90248 0.98759 0.95137 1.61380 1.35091 1.01354 1.26041 1.22186 0.97527 0.91119 0.97117 1.22055 0.88655 0.82802 0.86867 1.90433 1.50462 1.44331 1.65572 1.42121 1.31936 1.09586 1.37083 1.19616 1.12716 0.95581 1.18325 0.90262 1.26054 1.00331 0.94644 1.00356 1.69670 1.39695 1.02074 1.44550 0.85002 0.77965 0.77494 0.77967 1.19738 1.19646 1.19703 1.22484 1.00596 0.92073 0.92717 1.21503 1.02112 0.94956 0.96485 0.89733 0.90646 0.93514 0.91570 0.92954 0.90626 0.90528 0.74515 0.91273 0.92206 0.90846 0.91986 0.94275 0.93112 0.87486 0.87690 0.77098 0.91322 0.93590 0.91465 0.88927 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.01 71.98 0.65 -0.74 16 2 C -0.11 -1.48 2.72 -10.79 -0.03 -1.51 16 3 C -0.14 -1.36 8.94 71.98 0.64 -0.71 16 4 C 0.08 1.27 3.35 29.85 0.10 1.37 16 5 H 0.14 0.92 7.93 -2.39 -0.02 0.90 16 6 F -0.20 -4.34 16.44 44.97 0.74 -3.61 16 7 C 0.49 10.47 5.83 87.66 0.51 10.99 16 8 O -0.57 -17.89 16.67 -3.03 -0.05 -17.94 16 9 N -0.70 -11.86 5.00 -443.86 -2.22 -14.08 16 10 C 0.16 3.57 2.15 44.71 0.10 3.67 16 11 H 0.07 2.16 7.24 -2.39 -0.02 2.14 16 12 C -0.11 -2.49 4.96 28.93 0.14 -2.35 16 13 C -0.10 -2.64 5.37 28.74 0.15 -2.49 16 14 C 0.07 2.19 4.21 87.12 0.37 2.56 16 15 N -0.52 -16.40 4.18 -900.83 -3.76 -20.16 16 16 C 0.05 1.80 5.63 85.56 0.48 2.28 16 17 C 0.41 18.56 7.05 87.66 0.62 19.17 16 18 O -0.62 -31.43 12.12 -3.06 -0.04 -31.47 16 19 N -0.57 -28.66 5.29 -306.98 -1.62 -30.28 16 20 C -0.33 -18.49 9.68 84.04 0.81 -17.68 16 21 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 23 N -0.92 -49.36 13.05 21.67 0.28 -49.08 16 24 Si 0.99 42.43 29.55 68.60 2.03 44.45 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 C 0.05 1.51 5.09 86.41 0.44 1.95 16 29 C -0.11 -2.60 4.87 30.11 0.15 -2.46 16 30 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.58 7.39 -2.39 -0.02 0.57 16 33 H 0.07 1.21 8.07 -2.39 -0.02 1.19 16 34 H 0.05 0.62 7.84 -2.39 -0.02 0.60 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.42 3.95 8.37 -92.71 -0.78 3.17 16 38 H 0.07 1.40 7.59 -2.39 -0.02 1.39 16 39 H 0.06 1.35 8.06 -2.39 -0.02 1.33 16 40 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.06 1.69 8.08 -2.39 -0.02 1.67 16 42 H 0.04 1.37 6.12 -2.39 -0.01 1.35 16 43 H 0.05 1.69 7.43 -2.39 -0.02 1.67 16 44 H 0.11 3.33 7.91 -2.39 -0.02 3.31 16 45 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 46 H 0.40 19.12 7.90 -92.71 -0.73 18.39 16 47 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 48 H 0.05 1.78 5.28 -2.39 -0.01 1.77 16 49 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.09 1.71 7.89 -2.39 -0.02 1.69 16 51 H 0.07 1.61 6.66 -2.39 -0.02 1.59 16 Total: -1.00 -71.20 400.22 0.40 -70.80 By element: Atomic # 1 Polarization: 38.14 SS G_CDS: -0.56 Total: 37.58 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 5.60 Total: 13.78 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -7.32 Total: -113.60 kcal Atomic # 8 Polarization: -49.32 SS G_CDS: -0.09 Total: -49.41 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.74 Total: -3.61 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -71.20 0.40 -70.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327141861.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.945 kcal (2) G-P(sol) polarization free energy of solvation -71.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds