Wall clock time and date at job start Wed Apr 1 2020 02:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99863 * 2 1 4 4 N 1.46498 * 109.46988 * 125.00067 * 3 2 1 5 5 C 1.46503 * 119.99771 * 264.28964 * 4 3 2 6 6 C 1.50696 * 109.47418 * 89.99865 * 5 4 3 7 7 H 1.08000 * 119.99817 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99988 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00122 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00206 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47147 * 89.99763 * 10 8 6 12 12 H 1.48498 * 109.46946 * 210.00208 * 10 8 6 13 13 H 1.48502 * 109.46777 * 329.99504 * 10 8 6 14 14 C 1.34774 * 120.00192 * 84.28629 * 4 3 2 15 15 O 1.21285 * 119.99921 * 184.97338 * 14 4 3 16 16 C 1.50697 * 120.00015 * 4.97888 * 14 4 3 17 17 H 1.09004 * 109.46118 * 331.57208 * 16 14 4 18 18 C 1.53031 * 109.46656 * 91.54722 * 16 14 4 19 19 C 1.53117 * 109.28148 * 179.20410 * 18 16 14 20 20 C 1.53114 * 109.15298 * 302.33213 * 19 18 16 21 21 C 1.53039 * 109.27883 * 57.65834 * 20 19 18 22 22 N 1.46841 * 109.52410 * 300.82084 * 21 20 19 23 23 C 1.46901 * 111.00229 * 185.83774 * 22 21 20 24 24 C 1.50703 * 109.46948 * 51.68682 * 23 22 21 25 25 C 1.38675 * 120.41182 * 90.00079 * 24 23 22 26 26 C 1.38634 * 118.41247 * 180.02562 * 25 24 23 27 27 C 1.38226 * 119.16716 * 0.02562 * 26 25 24 28 28 N 1.31854 * 120.76026 * 0.02562 * 27 26 25 29 29 C 1.31892 * 121.72690 * 359.70580 * 28 27 26 30 30 H 1.08007 * 119.99819 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.99775 * 180.02562 * 1 2 3 32 32 H 1.07993 * 119.99665 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47031 * 245.00157 * 3 2 1 34 34 H 1.09002 * 109.47340 * 4.99690 * 3 2 1 35 35 H 1.09002 * 109.46816 * 210.00360 * 5 4 3 36 36 H 1.09001 * 109.47175 * 329.99556 * 5 4 3 37 37 H 0.96997 * 120.00578 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.50547 * 299.13984 * 18 16 14 39 39 H 1.09001 * 109.50578 * 59.25484 * 18 16 14 40 40 H 1.08998 * 109.52299 * 182.43021 * 19 18 16 41 41 H 1.09001 * 109.57817 * 62.27143 * 19 18 16 42 42 H 1.08994 * 109.50345 * 297.71573 * 20 19 18 43 43 H 1.09005 * 109.53195 * 177.61805 * 20 19 18 44 44 H 1.09000 * 109.46412 * 180.79884 * 21 20 19 45 45 H 1.09007 * 109.46327 * 60.83518 * 21 20 19 46 46 H 1.08998 * 109.47128 * 171.68372 * 23 22 21 47 47 H 1.08997 * 109.46996 * 291.68534 * 23 22 21 48 48 H 1.07993 * 120.79905 * 359.97438 * 25 24 23 49 49 H 1.08004 * 120.41557 * 179.97438 * 26 25 24 50 50 H 1.07998 * 119.62253 * 179.97438 * 27 26 25 51 51 H 1.08001 * 119.61815 * 180.31245 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6019 1.9775 2.3868 6 6 1.9348 0.9673 3.2843 7 1 1.8152 -0.0536 2.9530 8 6 1.4783 1.3463 4.5289 9 7 0.8966 0.4646 5.3124 10 14 1.6859 3.1119 5.1023 11 1 0.4979 3.9063 4.6988 12 1 1.8210 3.1395 6.5808 13 1 2.9039 3.6934 4.4830 14 6 4.2100 0.7626 1.0175 15 8 4.9452 0.7048 1.9804 16 6 4.6566 0.1979 -0.3064 17 1 3.7853 -0.1266 -0.8753 18 6 5.4070 1.2749 -1.0932 19 6 5.8760 0.6910 -2.4287 20 6 6.7595 -0.5304 -2.1604 21 6 5.9701 -1.5552 -1.3426 22 7 5.5445 -0.9486 -0.0749 23 6 4.9037 -1.9433 0.7958 24 6 5.8010 -3.1467 0.9288 25 6 6.7435 -3.2108 1.9441 26 6 7.5476 -4.3371 2.0275 27 6 7.3847 -5.3511 1.1024 28 7 6.4785 -5.2554 0.1494 29 6 5.6929 -4.2014 0.0427 30 1 -0.5400 0.9354 -0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 2.6213 1.4026 -0.9314 34 1 1.3586 2.1317 0.0895 35 1 3.4873 2.3754 2.8825 36 1 1.9074 2.7907 2.1758 37 1 0.5750 0.7312 6.1878 38 1 4.7431 2.1193 -1.2784 39 1 6.2709 1.6097 -0.5189 40 1 6.4481 1.4418 -2.9737 41 1 5.0108 0.3919 -3.0205 42 1 7.6445 -0.2239 -1.6030 43 1 7.0624 -0.9763 -3.1078 44 1 6.6010 -2.4201 -1.1377 45 1 5.0925 -1.8716 -1.9065 46 1 4.7319 -1.5076 1.7800 47 1 3.9512 -2.2465 0.3613 48 1 6.8492 -2.4025 2.6523 49 1 8.2925 -4.4207 2.8051 50 1 8.0074 -6.2316 1.1603 51 1 4.9586 -4.1609 -0.7483 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327876860.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:35 Heat of formation + Delta-G solvation = 34.968297 kcal Electronic energy + Delta-G solvation = -31525.076229 eV Core-core repulsion = 27618.201840 eV Total energy + Delta-G solvation = -3906.874389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.62554 -39.76502 -37.82011 -35.72756 -34.45912 -33.10445 -32.23666 -32.12047 -31.46450 -30.75047 -28.30304 -26.65856 -25.56518 -24.13765 -23.82779 -23.26751 -21.98761 -21.32647 -20.08747 -19.57819 -18.53630 -17.05434 -16.93447 -16.64727 -16.34023 -16.24393 -15.63575 -15.15532 -14.78692 -14.43112 -14.28228 -14.13056 -14.00702 -13.89729 -13.60705 -13.35672 -13.07062 -12.98746 -12.93166 -12.74289 -12.44094 -12.21309 -11.95658 -11.71224 -11.66528 -11.50797 -11.34041 -11.16412 -10.90953 -10.84340 -10.74142 -10.52598 -10.43248 -10.12355 -9.75112 -9.55485 -9.44725 -9.09780 -9.03208 -8.83306 -8.58007 -8.18603 -7.75907 -6.07411 -4.05173 1.06262 1.32143 2.57654 3.23939 3.25703 3.34403 3.37933 3.58329 3.81018 4.17804 4.39412 4.39775 4.67422 4.71387 4.81580 4.87198 4.88756 5.04060 5.06673 5.07253 5.15898 5.24851 5.25814 5.30065 5.36834 5.43700 5.46808 5.57479 5.60033 5.62875 5.64891 5.75396 5.80551 5.83403 5.93434 6.01971 6.06883 6.10608 6.17020 6.21069 6.29887 6.42844 6.61222 6.68732 6.89867 6.91603 7.01475 7.03730 7.12103 7.35556 7.61410 7.92594 8.20165 8.47958 8.93420 8.99138 9.53040 11.05982 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010015 B = 0.003969 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.145840 B = 7052.432647 C = 8263.183335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.164 4.164 3 C 0.140 3.860 4 N -0.591 5.591 5 C 0.218 3.782 6 C -0.519 4.519 7 H 0.075 0.925 8 C 0.072 3.928 9 N -0.898 5.898 10 Si 0.871 3.129 11 H -0.276 1.276 12 H -0.284 1.284 13 H -0.264 1.264 14 C 0.513 3.487 15 O -0.517 6.517 16 C 0.068 3.932 17 H 0.061 0.939 18 C -0.105 4.105 19 C -0.118 4.118 20 C -0.116 4.116 21 C 0.051 3.949 22 N -0.507 5.507 23 C 0.089 3.911 24 C -0.120 4.120 25 C -0.049 4.049 26 C -0.173 4.173 27 C 0.089 3.911 28 N -0.488 5.488 29 C 0.099 3.901 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.040 0.960 36 H 0.023 0.977 37 H 0.263 0.737 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.032 0.968 46 H 0.108 0.892 47 H 0.041 0.959 48 H 0.140 0.860 49 H 0.134 0.866 50 H 0.152 0.848 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.146 -3.688 -16.393 19.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.183 4.183 3 C 0.017 3.983 4 N -0.323 5.323 5 C 0.097 3.903 6 C -0.558 4.558 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.698 3.302 11 H -0.202 1.202 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.298 3.702 15 O -0.392 6.392 16 C -0.043 4.043 17 H 0.078 0.922 18 C -0.143 4.143 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.076 4.076 22 N -0.233 5.233 23 C -0.038 4.038 24 C -0.122 4.122 25 C -0.076 4.076 26 C -0.193 4.193 27 C -0.068 4.068 28 N -0.197 5.197 29 C -0.058 4.058 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.050 0.950 46 H 0.126 0.874 47 H 0.059 0.941 48 H 0.158 0.842 49 H 0.151 0.849 50 H 0.169 0.831 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.793 -4.215 -16.027 19.249 hybrid contribution -0.855 1.123 0.816 1.630 sum 8.938 -3.092 -15.210 17.911 Atomic orbital electron populations 1.23692 0.95731 1.01582 0.99805 1.23158 0.96368 0.98330 1.00492 1.20597 0.92554 0.96045 0.89147 1.47975 1.13239 1.56377 1.14672 1.19686 0.95981 0.93260 0.81357 1.21275 1.37219 0.97538 0.99762 0.90676 1.24839 0.94720 0.97111 0.96302 1.69889 1.39853 1.34050 1.09865 0.86924 0.79016 0.85730 0.78519 1.20223 1.21017 1.18906 1.20102 0.81760 0.79032 0.89313 1.90673 1.53785 1.55518 1.39225 1.21736 0.94826 0.92789 0.94965 0.92162 1.21505 1.00840 0.96402 0.95599 1.21571 0.99573 0.97703 0.96687 1.21584 0.99020 0.95625 0.99167 1.22231 0.98620 0.97414 0.89376 1.61726 1.40449 1.06953 1.14142 1.21174 0.93070 0.89187 1.00376 1.20766 0.98192 0.96761 0.96490 1.21636 0.92263 0.97263 0.96419 1.22171 1.01107 0.95076 1.00935 1.22701 0.95195 0.98186 0.90693 1.67667 1.05193 1.24714 1.22106 1.22643 0.96845 0.88930 0.97401 0.88567 0.88839 0.88274 0.91022 0.89938 0.94228 0.95869 0.92676 0.91090 0.90258 0.91503 0.92105 0.90993 0.91632 0.90341 0.94969 0.87429 0.94054 0.84190 0.84850 0.83059 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 14.32 29.01 0.42 -2.08 16 2 C -0.16 -2.54 9.25 -36.03 -0.33 -2.87 16 3 C 0.14 2.13 5.52 -5.19 -0.03 2.10 16 4 N -0.59 -11.57 2.45 -176.44 -0.43 -12.00 16 5 C 0.22 5.15 4.23 -5.19 -0.02 5.13 16 6 C -0.52 -14.48 9.94 -34.44 -0.34 -14.83 16 7 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 8 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 9 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 10 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 13 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 14 C 0.51 9.92 5.68 -10.99 -0.06 9.85 16 15 O -0.52 -12.20 14.98 5.55 0.08 -12.12 16 16 C 0.07 1.00 1.44 -68.88 -0.10 0.90 16 17 H 0.06 0.81 5.74 -51.93 -0.30 0.51 16 18 C -0.11 -1.28 5.26 -26.65 -0.14 -1.42 16 19 C -0.12 -1.12 6.00 -26.61 -0.16 -1.28 16 20 C -0.12 -1.16 6.09 -26.65 -0.16 -1.32 16 21 C 0.05 0.59 4.79 -3.84 -0.02 0.57 16 22 N -0.51 -7.30 4.36 -229.52 -1.00 -8.31 16 23 C 0.09 1.38 4.77 -4.97 -0.02 1.36 16 24 C -0.12 -1.67 4.39 -104.48 -0.46 -2.13 16 25 C -0.05 -0.67 9.86 -39.27 -0.39 -1.06 16 26 C -0.17 -1.97 10.11 -39.44 -0.40 -2.37 16 27 C 0.09 1.02 11.18 -17.55 -0.20 0.82 16 28 N -0.49 -6.46 10.36 -13.25 -0.14 -6.60 16 29 C 0.10 1.28 8.92 -17.55 -0.16 1.13 16 30 H 0.10 1.32 7.84 -52.48 -0.41 0.91 16 31 H 0.09 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.10 1.55 7.81 -52.49 -0.41 1.14 16 33 H 0.07 0.86 6.11 -51.93 -0.32 0.55 16 34 H 0.08 1.19 7.48 -51.93 -0.39 0.81 16 35 H 0.04 1.02 6.55 -51.93 -0.34 0.68 16 36 H 0.02 0.52 7.28 -51.93 -0.38 0.14 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.07 0.79 7.71 -51.93 -0.40 0.39 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.94 5.60 -51.93 -0.29 0.65 16 45 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.11 2.09 6.16 -51.93 -0.32 1.77 16 47 H 0.04 0.61 8.09 -51.93 -0.42 0.19 16 48 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 49 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 50 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 51 H 0.15 1.66 8.05 -52.49 -0.42 1.24 16 LS Contribution 403.45 15.07 6.08 6.08 Total: -1.00 -33.49 403.45 -10.19 -43.68 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -8.22 Total: 4.81 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -2.67 Total: -5.53 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.80 Total: -53.53 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.08 Total: -12.12 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.49 -10.19 -43.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327876860.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.649 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds