Wall clock time and date at job start Wed Apr 1 2020 02:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50700 * 119.99863 * 2 1 4 4 N 1.46498 * 109.46988 * 125.00067 * 3 2 1 5 5 C 1.46503 * 119.99771 * 264.28964 * 4 3 2 6 6 C 1.50696 * 109.47418 * 89.99865 * 5 4 3 7 7 H 1.08000 * 119.99817 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99988 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00122 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00206 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47147 * 89.99763 * 10 8 6 12 12 H 1.48498 * 109.46946 * 210.00208 * 10 8 6 13 13 H 1.48502 * 109.46777 * 329.99504 * 10 8 6 14 14 C 1.34774 * 120.00192 * 84.28629 * 4 3 2 15 15 O 1.21285 * 119.99921 * 184.97338 * 14 4 3 16 16 C 1.50697 * 120.00015 * 4.97888 * 14 4 3 17 17 H 1.09004 * 109.46118 * 331.57208 * 16 14 4 18 18 C 1.53031 * 109.46656 * 91.54722 * 16 14 4 19 19 C 1.53117 * 109.28148 * 179.20410 * 18 16 14 20 20 C 1.53114 * 109.15298 * 302.33213 * 19 18 16 21 21 C 1.53039 * 109.27883 * 57.65834 * 20 19 18 22 22 N 1.46841 * 109.52410 * 300.82084 * 21 20 19 23 23 C 1.46901 * 111.00229 * 185.83774 * 22 21 20 24 24 C 1.50703 * 109.46948 * 51.68682 * 23 22 21 25 25 C 1.38675 * 120.41182 * 90.00079 * 24 23 22 26 26 C 1.38634 * 118.41247 * 180.02562 * 25 24 23 27 27 C 1.38226 * 119.16716 * 0.02562 * 26 25 24 28 28 N 1.31854 * 120.76026 * 0.02562 * 27 26 25 29 29 C 1.31892 * 121.72690 * 359.70580 * 28 27 26 30 30 H 1.08007 * 119.99819 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.99775 * 180.02562 * 1 2 3 32 32 H 1.07993 * 119.99665 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47031 * 245.00157 * 3 2 1 34 34 H 1.09002 * 109.47340 * 4.99690 * 3 2 1 35 35 H 1.09002 * 109.46816 * 210.00360 * 5 4 3 36 36 H 1.09001 * 109.47175 * 329.99556 * 5 4 3 37 37 H 0.96997 * 120.00578 * 180.02562 * 9 8 6 38 38 H 1.08998 * 109.50547 * 299.13984 * 18 16 14 39 39 H 1.09001 * 109.50578 * 59.25484 * 18 16 14 40 40 H 1.08998 * 109.52299 * 182.43021 * 19 18 16 41 41 H 1.09001 * 109.57817 * 62.27143 * 19 18 16 42 42 H 1.08994 * 109.50345 * 297.71573 * 20 19 18 43 43 H 1.09005 * 109.53195 * 177.61805 * 20 19 18 44 44 H 1.09000 * 109.46412 * 180.79884 * 21 20 19 45 45 H 1.09007 * 109.46327 * 60.83518 * 21 20 19 46 46 H 1.08998 * 109.47128 * 171.68372 * 23 22 21 47 47 H 1.08997 * 109.46996 * 291.68534 * 23 22 21 48 48 H 1.07993 * 120.79905 * 359.97438 * 25 24 23 49 49 H 1.08004 * 120.41557 * 179.97438 * 26 25 24 50 50 H 1.07998 * 119.62253 * 179.97438 * 27 26 25 51 51 H 1.08001 * 119.61815 * 180.31245 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6019 1.9775 2.3868 6 6 1.9348 0.9673 3.2843 7 1 1.8152 -0.0536 2.9530 8 6 1.4783 1.3463 4.5289 9 7 0.8966 0.4646 5.3124 10 14 1.6859 3.1119 5.1023 11 1 0.4979 3.9063 4.6988 12 1 1.8210 3.1395 6.5808 13 1 2.9039 3.6934 4.4830 14 6 4.2100 0.7626 1.0175 15 8 4.9452 0.7048 1.9804 16 6 4.6566 0.1979 -0.3064 17 1 3.7853 -0.1266 -0.8753 18 6 5.4070 1.2749 -1.0932 19 6 5.8760 0.6910 -2.4287 20 6 6.7595 -0.5304 -2.1604 21 6 5.9701 -1.5552 -1.3426 22 7 5.5445 -0.9486 -0.0749 23 6 4.9037 -1.9433 0.7958 24 6 5.8010 -3.1467 0.9288 25 6 6.7435 -3.2108 1.9441 26 6 7.5476 -4.3371 2.0275 27 6 7.3847 -5.3511 1.1024 28 7 6.4785 -5.2554 0.1494 29 6 5.6929 -4.2014 0.0427 30 1 -0.5400 0.9354 -0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 2.6213 1.4026 -0.9314 34 1 1.3586 2.1317 0.0895 35 1 3.4873 2.3754 2.8825 36 1 1.9074 2.7907 2.1758 37 1 0.5750 0.7312 6.1878 38 1 4.7431 2.1193 -1.2784 39 1 6.2709 1.6097 -0.5189 40 1 6.4481 1.4418 -2.9737 41 1 5.0108 0.3919 -3.0205 42 1 7.6445 -0.2239 -1.6030 43 1 7.0624 -0.9763 -3.1078 44 1 6.6010 -2.4201 -1.1377 45 1 5.0925 -1.8716 -1.9065 46 1 4.7319 -1.5076 1.7800 47 1 3.9512 -2.2465 0.3613 48 1 6.8492 -2.4025 2.6523 49 1 8.2925 -4.4207 2.8051 50 1 8.0074 -6.2316 1.1603 51 1 4.9586 -4.1609 -0.7483 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327876860.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:34 Heat of formation + Delta-G solvation = 13.257293 kcal Electronic energy + Delta-G solvation = -31526.017689 eV Core-core repulsion = 27618.201840 eV Total energy + Delta-G solvation = -3907.815849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.79191 -40.95602 -39.05958 -37.24017 -35.47038 -35.00365 -33.75825 -33.23108 -32.59839 -31.79209 -30.09049 -27.75312 -26.92111 -25.59916 -24.83045 -24.23773 -23.58464 -22.38498 -21.31696 -20.62748 -19.96282 -19.04199 -18.05883 -18.02067 -17.63643 -17.33280 -16.72598 -16.66913 -16.17363 -15.70415 -15.61587 -15.35864 -15.06769 -14.98899 -14.86526 -14.58687 -14.38740 -14.18154 -14.05657 -13.98727 -13.92627 -13.57693 -13.45522 -13.21017 -12.96170 -12.85645 -12.54832 -12.50821 -12.30730 -12.19777 -11.98149 -11.82002 -11.70201 -11.60537 -11.33627 -10.80237 -10.79359 -10.48595 -10.43426 -10.27287 -9.98749 -9.46089 -9.26784 -8.30177 -6.33232 0.08108 0.28338 1.30125 1.31362 1.36821 1.45571 1.78022 2.27667 2.32272 2.67663 3.03510 3.06115 3.43632 3.55335 3.70202 3.77392 3.85690 3.97252 4.01024 4.03378 4.07437 4.09440 4.19602 4.23207 4.28506 4.39093 4.40775 4.54598 4.60596 4.62753 4.72791 4.73839 4.77391 4.83168 4.85101 4.95195 4.97727 5.02563 5.06350 5.15786 5.18964 5.26275 5.36000 5.46483 5.47027 5.57207 5.70679 5.71565 5.86596 5.91834 6.07487 6.28785 6.67068 6.69770 6.94393 7.25838 7.44451 8.86743 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010015 B = 0.003969 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.145840 B = 7052.432647 C = 8263.183335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.181 4.181 3 C 0.136 3.864 4 N -0.596 5.596 5 C 0.226 3.774 6 C -0.518 4.518 7 H 0.029 0.971 8 C 0.011 3.989 9 N -0.947 5.947 10 Si 0.942 3.058 11 H -0.252 1.252 12 H -0.286 1.286 13 H -0.256 1.256 14 C 0.506 3.494 15 O -0.572 6.572 16 C 0.079 3.921 17 H 0.078 0.922 18 C -0.103 4.103 19 C -0.110 4.110 20 C -0.114 4.114 21 C 0.053 3.947 22 N -0.521 5.521 23 C 0.101 3.899 24 C -0.132 4.132 25 C -0.072 4.072 26 C -0.166 4.166 27 C 0.091 3.909 28 N -0.501 5.501 29 C 0.101 3.899 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.018 0.982 36 H 0.048 0.952 37 H 0.265 0.735 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.055 0.945 47 H 0.041 0.959 48 H 0.121 0.879 49 H 0.161 0.839 50 H 0.187 0.813 51 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.729 -2.943 -19.387 21.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.200 4.200 3 C 0.014 3.986 4 N -0.327 5.327 5 C 0.103 3.897 6 C -0.557 4.557 7 H 0.047 0.953 8 C -0.186 4.186 9 N -0.588 5.588 10 Si 0.765 3.235 11 H -0.176 1.176 12 H -0.212 1.212 13 H -0.180 1.180 14 C 0.294 3.706 15 O -0.450 6.450 16 C -0.032 4.032 17 H 0.095 0.905 18 C -0.142 4.142 19 C -0.147 4.147 20 C -0.152 4.152 21 C -0.074 4.074 22 N -0.247 5.247 23 C -0.027 4.027 24 C -0.134 4.134 25 C -0.098 4.098 26 C -0.185 4.185 27 C -0.065 4.065 28 N -0.210 5.210 29 C -0.056 4.056 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.128 0.872 34 H 0.113 0.887 35 H 0.036 0.964 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.110 0.890 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.139 0.861 49 H 0.179 0.821 50 H 0.204 0.796 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 10.360 -3.468 -19.086 21.992 hybrid contribution -1.021 0.751 1.781 2.186 sum 9.339 -2.717 -17.305 19.851 Atomic orbital electron populations 1.23909 0.95626 1.02555 0.98443 1.23184 0.96791 0.98296 1.01722 1.20918 0.92524 0.96213 0.88936 1.48039 1.14219 1.55994 1.14478 1.19353 0.94860 0.92822 0.82634 1.21451 1.36995 0.96460 1.00765 0.95293 1.25784 0.94370 1.02100 0.96393 1.70054 1.41580 1.36668 1.10492 0.85799 0.80056 0.79942 0.77694 1.17637 1.21182 1.17986 1.21040 0.81061 0.77854 0.90609 1.90639 1.55374 1.57449 1.41539 1.21715 0.95877 0.93486 0.92123 0.90466 1.21563 1.00026 0.96096 0.96481 1.21562 1.00353 0.97734 0.95047 1.21607 0.98286 0.95546 0.99724 1.22303 0.99225 0.97737 0.88129 1.61694 1.40319 1.06889 1.15798 1.20853 0.93835 0.89853 0.98112 1.20670 0.98514 0.96713 0.97503 1.21677 0.93531 0.98081 0.96539 1.22437 1.00753 0.93894 1.01460 1.23290 0.94663 0.98981 0.89609 1.67744 1.05758 1.24590 1.22912 1.22768 0.97109 0.88363 0.97389 0.87331 0.88223 0.89187 0.87164 0.88695 0.96419 0.93439 0.92571 0.89536 0.92449 0.89427 0.90259 0.92397 0.89021 0.90860 0.93496 0.92607 0.94052 0.86070 0.82123 0.79596 0.81911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.78 14.32 67.77 0.97 -3.81 16 2 C -0.18 -5.52 9.25 25.64 0.24 -5.28 16 3 C 0.14 3.93 5.52 85.63 0.47 4.40 16 4 N -0.60 -23.61 2.45 -830.51 -2.04 -25.65 16 5 C 0.23 10.82 4.23 85.63 0.36 11.19 16 6 C -0.52 -30.10 9.94 25.60 0.25 -29.85 16 7 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 8 C 0.01 0.64 5.47 84.65 0.46 1.11 16 9 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 10 Si 0.94 44.43 27.47 68.60 1.88 46.31 16 11 H -0.25 -10.87 7.11 99.48 0.71 -10.17 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.26 -11.62 6.54 99.48 0.65 -10.97 16 14 C 0.51 20.31 5.68 87.66 0.50 20.81 16 15 O -0.57 -28.88 14.98 -3.04 -0.05 -28.92 16 16 C 0.08 2.28 1.44 44.19 0.06 2.35 16 17 H 0.08 1.95 5.74 -2.39 -0.01 1.94 16 18 C -0.10 -2.34 5.26 30.64 0.16 -2.18 16 19 C -0.11 -1.70 6.00 30.67 0.18 -1.51 16 20 C -0.11 -1.98 6.09 30.65 0.19 -1.79 16 21 C 0.05 1.15 4.79 86.33 0.41 1.56 16 22 N -0.52 -15.32 4.36 -880.06 -3.84 -19.16 16 23 C 0.10 3.37 4.77 85.56 0.41 3.78 16 24 C -0.13 -3.84 4.39 -19.77 -0.09 -3.93 16 25 C -0.07 -2.07 9.86 22.47 0.22 -1.84 16 26 C -0.17 -3.67 10.11 22.36 0.23 -3.44 16 27 C 0.09 1.92 11.18 84.69 0.95 2.86 16 28 N -0.50 -12.61 10.36 -195.84 -2.03 -14.64 16 29 C 0.10 2.57 8.92 84.67 0.76 3.33 16 30 H 0.11 2.81 7.84 -2.91 -0.02 2.78 16 31 H 0.10 2.68 8.06 -2.91 -0.02 2.65 16 32 H 0.09 2.88 7.81 -2.91 -0.02 2.86 16 33 H 0.11 2.32 6.11 -2.39 -0.01 2.30 16 34 H 0.09 2.51 7.48 -2.39 -0.02 2.50 16 35 H 0.02 0.93 6.55 -2.39 -0.02 0.92 16 36 H 0.05 2.06 7.28 -2.39 -0.02 2.04 16 37 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 38 H 0.09 1.68 7.71 -2.39 -0.02 1.66 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.07 1.69 5.60 -2.39 -0.01 1.67 16 45 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.06 2.43 6.16 -2.39 -0.01 2.42 16 47 H 0.04 1.31 8.09 -2.39 -0.02 1.29 16 48 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 49 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 50 H 0.19 2.53 8.06 -2.91 -0.02 2.51 16 51 H 0.16 3.51 8.05 -2.91 -0.02 3.49 16 Total: -1.00 -78.82 403.45 1.82 -77.00 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.85 Total: 27.08 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 6.74 Total: -2.25 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -7.61 Total: -119.22 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.05 Total: -28.92 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Total: -78.82 1.82 -77.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327876860.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.261 kcal (2) G-P(sol) polarization free energy of solvation -78.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds