Wall clock time and date at job start Wed Apr 1 2020 01:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00009 * 2 1 4 4 C 1.52999 * 109.46763 * 269.99318 * 3 2 1 5 5 C 1.52999 * 109.47359 * 300.00274 * 4 3 2 6 6 C 1.53001 * 109.47000 * 60.00170 * 4 3 2 7 7 C 1.52998 * 109.47451 * 180.02562 * 4 3 2 8 8 N 1.46495 * 109.47704 * 180.02562 * 7 4 3 9 9 C 1.36937 * 120.00303 * 179.97438 * 8 7 4 10 10 H 1.07996 * 119.99798 * 359.97438 * 9 8 7 11 11 C 1.38817 * 119.99883 * 180.02562 * 9 8 7 12 12 N 1.31614 * 120.00091 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99622 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47242 * 90.00172 * 13 11 9 15 15 H 1.48502 * 109.47064 * 210.00036 * 13 11 9 16 16 H 1.48499 * 109.47483 * 329.99794 * 13 11 9 17 17 C 1.34780 * 119.99973 * 179.97438 * 2 1 3 18 18 O 1.21586 * 120.00156 * 185.11869 * 17 2 1 19 19 C 1.47581 * 119.99725 * 5.11685 * 17 2 1 20 20 C 1.40239 * 119.83442 * 320.31275 * 19 17 2 21 21 C 1.36199 * 120.37644 * 180.02562 * 20 19 17 22 22 C 1.39915 * 119.96080 * 359.96876 * 21 20 19 23 23 C 1.46252 * 133.83537 * 180.02562 * 22 21 20 24 24 C 1.34459 * 107.03214 * 180.02562 * 23 22 21 25 25 N 1.36563 * 109.97560 * 0.02562 * 24 23 22 26 26 C 1.46502 * 125.06913 * 180.02562 * 25 24 23 27 27 C 1.37822 * 109.85899 * 0.26311 * 25 24 23 28 28 C 1.38694 * 133.37079 * 180.43294 * 27 25 24 29 29 H 1.09003 * 109.47454 * 265.13597 * 1 2 3 30 30 H 1.09003 * 109.47044 * 25.13465 * 1 2 3 31 31 H 1.09001 * 109.47182 * 145.13331 * 1 2 3 32 32 H 1.08996 * 109.47728 * 29.99186 * 3 2 1 33 33 H 1.09002 * 109.47005 * 149.99890 * 3 2 1 34 34 H 1.08997 * 109.47682 * 59.99914 * 5 4 3 35 35 H 1.09001 * 109.47320 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.47304 * 299.99976 * 5 4 3 37 37 H 1.09001 * 109.46927 * 59.99923 * 6 4 3 38 38 H 1.09001 * 109.47092 * 180.02562 * 6 4 3 39 39 H 1.08996 * 109.47607 * 299.99675 * 6 4 3 40 40 H 1.09001 * 109.46981 * 300.00386 * 7 4 3 41 41 H 1.09002 * 109.47082 * 59.99535 * 7 4 3 42 42 H 0.97001 * 119.99786 * 359.97438 * 8 7 4 43 43 H 0.97000 * 120.00106 * 180.02562 * 12 11 9 44 44 H 1.07999 * 119.81086 * 359.97438 * 20 19 17 45 45 H 1.08002 * 120.01315 * 179.97438 * 21 20 19 46 46 H 1.08000 * 126.48823 * 359.97438 * 23 22 21 47 47 H 1.07998 * 125.01274 * 180.02562 * 24 23 22 48 48 H 1.09005 * 109.46634 * 90.02181 * 26 25 24 49 49 H 1.08995 * 109.46987 * 330.02461 * 26 25 24 50 50 H 1.08998 * 109.46792 * 210.01794 * 26 25 24 51 51 H 1.07999 * 120.16131 * 359.27755 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7102 -1.4425 5 6 3.2794 0.6439 -2.1637 6 6 1.1157 1.8931 -2.1639 7 6 3.2181 3.0349 -1.4427 8 7 3.4619 3.4580 -2.8239 9 6 4.1349 4.6240 -3.0742 10 1 4.4857 5.2319 -2.2534 11 6 4.3654 5.0251 -4.3830 12 7 3.9374 4.2845 -5.3833 13 14 5.2829 6.6160 -4.7244 14 1 6.7388 6.3380 -4.8158 15 1 4.8083 7.1958 -6.0065 16 1 5.0311 7.5790 -3.6224 17 6 2.1388 -1.1672 0.0005 18 8 3.3511 -1.1693 0.0945 19 6 1.4053 -2.4428 -0.1129 20 6 0.1894 -2.6110 0.5653 21 6 -0.4965 -3.7838 0.4688 22 6 0.0117 -4.8283 -0.3111 23 6 -0.4548 -6.1788 -0.6234 24 6 0.4609 -6.7335 -1.4369 25 7 1.4748 -5.8488 -1.6699 26 6 2.6447 -6.1119 -2.5115 27 6 1.2358 -4.6734 -0.9910 28 6 1.9259 -3.4746 -0.8902 29 1 -0.3634 -0.0871 1.0240 30 1 -0.3633 0.9304 -0.4365 31 1 -0.3633 -0.8432 -0.5875 32 1 1.6084 2.0285 0.5137 33 1 3.1499 1.1384 0.5139 34 1 2.7345 -0.3001 -2.1637 35 1 3.4608 0.9582 -3.1915 36 1 4.2318 0.5135 -1.6498 37 1 0.5266 2.6529 -1.6501 38 1 1.2975 2.2072 -3.1917 39 1 0.5707 0.9493 -2.1639 40 1 2.6294 3.7948 -0.9288 41 1 4.1705 2.9042 -0.9289 42 1 3.1465 2.9122 -3.5611 43 1 4.0988 4.5646 -6.2979 44 1 -0.2049 -1.8064 1.1682 45 1 -1.4322 -3.9071 0.9940 46 1 -1.3625 -6.6432 -0.2672 47 1 0.4031 -7.7314 -1.8457 48 1 2.4292 -5.8124 -3.5372 49 1 2.8791 -7.1761 -2.4854 50 1 3.4962 -5.5430 -2.1382 51 1 2.8633 -3.3427 -1.4101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329344744.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:50 Heat of formation + Delta-G solvation = 52.433111 kcal Electronic energy + Delta-G solvation = -30276.473153 eV Core-core repulsion = 26370.356095 eV Total energy + Delta-G solvation = -3906.117058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.63299 -40.22580 -37.59965 -36.71829 -35.05244 -33.24462 -32.94721 -30.70801 -30.28753 -29.46492 -27.81999 -26.69274 -26.56963 -25.86392 -25.31797 -23.36068 -22.36607 -22.02404 -20.69826 -19.43349 -18.32863 -17.59715 -17.17900 -17.13048 -16.30422 -16.00832 -15.63582 -15.38313 -14.92558 -14.46725 -14.34465 -14.15543 -13.95611 -13.66040 -13.45304 -13.37307 -13.20343 -13.03552 -12.98097 -12.71749 -12.68715 -12.49784 -12.26943 -12.16857 -11.73259 -11.41642 -11.26071 -11.15336 -11.01621 -10.92565 -10.77721 -10.64509 -10.22212 -10.19540 -9.98090 -9.89661 -9.66565 -9.59374 -8.80533 -8.49573 -8.41933 -7.91448 -6.83041 -5.70376 -2.97506 0.67572 1.28161 2.32535 2.45039 2.87313 3.10541 3.47578 3.52534 3.54070 3.72134 4.35105 4.37876 4.48113 4.54040 4.65469 4.79634 4.85720 5.00416 5.10984 5.11462 5.18111 5.21769 5.24430 5.33157 5.37533 5.46461 5.48931 5.62129 5.63680 5.66263 5.76147 5.79843 5.98036 6.03517 6.13532 6.18316 6.22534 6.26954 6.36080 6.43325 6.47029 6.49908 6.59347 6.69477 6.80213 6.83813 6.90045 6.95401 7.01033 7.03082 7.43115 7.76234 8.24487 8.49323 9.60316 10.20120 10.54949 11.52878 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.002316 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.243401 B =12087.502977 C =12915.650733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.602 5.602 3 C 0.127 3.873 4 C -0.085 4.085 5 C -0.124 4.124 6 C -0.136 4.136 7 C 0.165 3.835 8 N -0.728 5.728 9 C -0.234 4.234 10 H 0.069 0.931 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.906 3.094 14 H -0.291 1.291 15 H -0.292 1.292 16 H -0.283 1.283 17 C 0.561 3.439 18 O -0.530 6.530 19 C -0.109 4.109 20 C -0.123 4.123 21 C -0.080 4.080 22 C -0.091 4.091 23 C -0.211 4.211 24 C 0.057 3.943 25 N -0.484 5.484 26 C 0.075 3.925 27 C 0.085 3.915 28 C -0.066 4.066 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.046 0.954 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.385 0.615 43 H 0.254 0.746 44 H 0.135 0.865 45 H 0.127 0.873 46 H 0.148 0.852 47 H 0.169 0.831 48 H 0.072 0.928 49 H 0.084 0.916 50 H 0.083 0.917 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.324 -23.748 11.377 29.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.334 5.334 3 C 0.004 3.996 4 C -0.087 4.087 5 C -0.182 4.182 6 C -0.193 4.193 7 C 0.037 3.963 8 N -0.373 5.373 9 C -0.366 4.366 10 H 0.087 0.913 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.218 1.218 15 H -0.219 1.219 16 H -0.208 1.208 17 C 0.350 3.650 18 O -0.407 6.407 19 C -0.113 4.113 20 C -0.142 4.142 21 C -0.099 4.099 22 C -0.096 4.096 23 C -0.236 4.236 24 C -0.069 4.069 25 N -0.167 5.167 26 C -0.067 4.067 27 C -0.021 4.021 28 C -0.087 4.087 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.220 0.780 43 H 0.064 0.936 44 H 0.153 0.847 45 H 0.145 0.855 46 H 0.165 0.835 47 H 0.186 0.814 48 H 0.091 0.909 49 H 0.102 0.898 50 H 0.102 0.898 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.309 -23.657 11.233 28.526 hybrid contribution 0.384 0.643 -0.666 1.003 sum -10.925 -23.013 10.567 27.579 Atomic orbital electron populations 1.22266 0.79893 1.04053 1.01238 1.47620 1.06833 1.05958 1.73034 1.21588 0.97524 0.83348 0.97132 1.21099 0.96427 0.96896 0.94250 1.21713 0.99185 0.96320 1.00933 1.21878 0.95775 0.99922 1.01739 1.20585 0.95701 0.91202 0.88820 1.42391 1.68104 1.25780 1.01009 1.19248 1.27476 0.98126 0.91719 0.91270 1.24716 1.01882 0.98992 0.95595 1.69658 1.51726 1.38965 0.98089 0.86193 0.79533 0.83289 0.77217 1.21827 1.21879 1.20832 1.18160 0.86991 0.83402 0.76477 1.90805 1.13522 1.87159 1.49176 1.19492 0.96321 0.94200 1.01293 1.21056 0.94132 0.98289 1.00766 1.20159 0.99847 0.91613 0.98233 1.19364 0.94815 0.95206 1.00259 1.21692 1.01999 0.94087 1.05786 1.21865 0.88767 0.95658 1.00627 1.43830 1.20062 1.11512 1.41300 1.22017 0.86808 1.03136 0.94736 1.18067 0.97145 0.88344 0.98509 1.19976 0.99333 0.89586 0.99778 0.92566 0.90237 0.90486 0.90482 0.89618 0.94479 0.92087 0.92594 0.93214 0.91529 0.93543 0.96442 0.96263 0.78019 0.93634 0.84698 0.85537 0.83452 0.81386 0.90929 0.89772 0.89789 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 7.62 59.84 0.46 1.09 16 2 N -0.60 -7.77 2.40 -182.79 -0.44 -8.21 16 3 C 0.13 1.82 4.59 -4.04 -0.02 1.80 16 4 C -0.09 -1.46 0.60 -154.51 -0.09 -1.56 16 5 C -0.12 -2.33 7.05 37.16 0.26 -2.06 16 6 C -0.14 -2.20 7.06 37.16 0.26 -1.94 16 7 C 0.17 3.45 5.15 -4.05 -0.02 3.43 16 8 N -0.73 -18.81 5.01 -59.91 -0.30 -19.11 16 9 C -0.23 -6.71 9.99 -15.06 -0.15 -6.86 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 12 N -0.94 -28.79 13.06 55.49 0.72 -28.06 16 13 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 14 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 C 0.56 8.27 5.57 -12.45 -0.07 8.20 16 18 O -0.53 -9.64 15.08 5.29 0.08 -9.56 16 19 C -0.11 -1.38 5.23 -104.95 -0.55 -1.93 16 20 C -0.12 -1.24 7.48 -39.56 -0.30 -1.54 16 21 C -0.08 -0.75 10.03 -39.69 -0.40 -1.15 16 22 C -0.09 -0.97 6.37 -105.05 -0.67 -1.64 16 23 C -0.21 -1.77 11.08 -37.70 -0.42 -2.19 16 24 C 0.06 0.42 11.28 -16.78 -0.19 0.23 16 25 N -0.48 -4.37 3.18 -121.84 -0.39 -4.75 16 26 C 0.07 0.45 11.02 59.85 0.66 1.11 16 27 C 0.08 0.97 6.80 -84.00 -0.57 0.40 16 28 C -0.07 -0.83 9.52 -39.03 -0.37 -1.20 16 29 H 0.06 0.40 6.85 -51.93 -0.36 0.05 16 30 H 0.08 0.72 6.27 -51.93 -0.33 0.39 16 31 H 0.08 0.70 5.85 -51.93 -0.30 0.39 16 32 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 33 H 0.09 1.36 7.36 -51.93 -0.38 0.97 16 34 H 0.04 0.65 6.22 -51.93 -0.32 0.33 16 35 H 0.06 1.28 6.86 -51.93 -0.36 0.92 16 36 H 0.05 1.11 7.85 -51.93 -0.41 0.71 16 37 H 0.05 0.75 8.07 -51.93 -0.42 0.33 16 38 H 0.07 1.28 6.86 -51.93 -0.36 0.92 16 39 H 0.05 0.66 6.07 -51.93 -0.32 0.34 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.38 10.42 5.36 -40.82 -0.22 10.20 16 43 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.14 1.09 5.29 -52.49 -0.28 0.81 16 45 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 46 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.08 0.30 8.13 -51.93 -0.42 -0.12 16 50 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 51 H 0.13 1.63 8.05 -52.49 -0.42 1.21 16 LS Contribution 397.51 15.07 5.99 5.99 Total: -1.00 -35.39 397.51 -9.43 -44.82 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -7.81 Total: 7.38 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.27 Total: -6.37 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.40 Total: -60.14 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.08 Total: -9.56 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.39 -9.43 -44.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329344744.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.251 kcal (2) G-P(sol) polarization free energy of solvation -35.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds