Wall clock time and date at job start Wed Apr 1 2020 01:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00009 * 2 1 4 4 C 1.52999 * 109.46763 * 269.99318 * 3 2 1 5 5 C 1.52999 * 109.47359 * 300.00274 * 4 3 2 6 6 C 1.53001 * 109.47000 * 60.00170 * 4 3 2 7 7 C 1.52998 * 109.47451 * 180.02562 * 4 3 2 8 8 N 1.46495 * 109.47704 * 180.02562 * 7 4 3 9 9 C 1.36937 * 120.00303 * 179.97438 * 8 7 4 10 10 H 1.07996 * 119.99798 * 359.97438 * 9 8 7 11 11 C 1.38817 * 119.99883 * 180.02562 * 9 8 7 12 12 N 1.31614 * 120.00091 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99622 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47242 * 90.00172 * 13 11 9 15 15 H 1.48502 * 109.47064 * 210.00036 * 13 11 9 16 16 H 1.48499 * 109.47483 * 329.99794 * 13 11 9 17 17 C 1.34780 * 119.99973 * 179.97438 * 2 1 3 18 18 O 1.21586 * 120.00156 * 185.11869 * 17 2 1 19 19 C 1.47581 * 119.99725 * 5.11685 * 17 2 1 20 20 C 1.40239 * 119.83442 * 320.31275 * 19 17 2 21 21 C 1.36199 * 120.37644 * 180.02562 * 20 19 17 22 22 C 1.39915 * 119.96080 * 359.96876 * 21 20 19 23 23 C 1.46252 * 133.83537 * 180.02562 * 22 21 20 24 24 C 1.34459 * 107.03214 * 180.02562 * 23 22 21 25 25 N 1.36563 * 109.97560 * 0.02562 * 24 23 22 26 26 C 1.46502 * 125.06913 * 180.02562 * 25 24 23 27 27 C 1.37822 * 109.85899 * 0.26311 * 25 24 23 28 28 C 1.38694 * 133.37079 * 180.43294 * 27 25 24 29 29 H 1.09003 * 109.47454 * 265.13597 * 1 2 3 30 30 H 1.09003 * 109.47044 * 25.13465 * 1 2 3 31 31 H 1.09001 * 109.47182 * 145.13331 * 1 2 3 32 32 H 1.08996 * 109.47728 * 29.99186 * 3 2 1 33 33 H 1.09002 * 109.47005 * 149.99890 * 3 2 1 34 34 H 1.08997 * 109.47682 * 59.99914 * 5 4 3 35 35 H 1.09001 * 109.47320 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.47304 * 299.99976 * 5 4 3 37 37 H 1.09001 * 109.46927 * 59.99923 * 6 4 3 38 38 H 1.09001 * 109.47092 * 180.02562 * 6 4 3 39 39 H 1.08996 * 109.47607 * 299.99675 * 6 4 3 40 40 H 1.09001 * 109.46981 * 300.00386 * 7 4 3 41 41 H 1.09002 * 109.47082 * 59.99535 * 7 4 3 42 42 H 0.97001 * 119.99786 * 359.97438 * 8 7 4 43 43 H 0.97000 * 120.00106 * 180.02562 * 12 11 9 44 44 H 1.07999 * 119.81086 * 359.97438 * 20 19 17 45 45 H 1.08002 * 120.01315 * 179.97438 * 21 20 19 46 46 H 1.08000 * 126.48823 * 359.97438 * 23 22 21 47 47 H 1.07998 * 125.01274 * 180.02562 * 24 23 22 48 48 H 1.09005 * 109.46634 * 90.02181 * 26 25 24 49 49 H 1.08995 * 109.46987 * 330.02461 * 26 25 24 50 50 H 1.08998 * 109.46792 * 210.01794 * 26 25 24 51 51 H 1.07999 * 120.16131 * 359.27755 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7102 -1.4425 5 6 3.2794 0.6439 -2.1637 6 6 1.1157 1.8931 -2.1639 7 6 3.2181 3.0349 -1.4427 8 7 3.4619 3.4580 -2.8239 9 6 4.1349 4.6240 -3.0742 10 1 4.4857 5.2319 -2.2534 11 6 4.3654 5.0251 -4.3830 12 7 3.9374 4.2845 -5.3833 13 14 5.2829 6.6160 -4.7244 14 1 6.7388 6.3380 -4.8158 15 1 4.8083 7.1958 -6.0065 16 1 5.0311 7.5790 -3.6224 17 6 2.1388 -1.1672 0.0005 18 8 3.3511 -1.1693 0.0945 19 6 1.4053 -2.4428 -0.1129 20 6 0.1894 -2.6110 0.5653 21 6 -0.4965 -3.7838 0.4688 22 6 0.0117 -4.8283 -0.3111 23 6 -0.4548 -6.1788 -0.6234 24 6 0.4609 -6.7335 -1.4369 25 7 1.4748 -5.8488 -1.6699 26 6 2.6447 -6.1119 -2.5115 27 6 1.2358 -4.6734 -0.9910 28 6 1.9259 -3.4746 -0.8902 29 1 -0.3634 -0.0871 1.0240 30 1 -0.3633 0.9304 -0.4365 31 1 -0.3633 -0.8432 -0.5875 32 1 1.6084 2.0285 0.5137 33 1 3.1499 1.1384 0.5139 34 1 2.7345 -0.3001 -2.1637 35 1 3.4608 0.9582 -3.1915 36 1 4.2318 0.5135 -1.6498 37 1 0.5266 2.6529 -1.6501 38 1 1.2975 2.2072 -3.1917 39 1 0.5707 0.9493 -2.1639 40 1 2.6294 3.7948 -0.9288 41 1 4.1705 2.9042 -0.9289 42 1 3.1465 2.9122 -3.5611 43 1 4.0988 4.5646 -6.2979 44 1 -0.2049 -1.8064 1.1682 45 1 -1.4322 -3.9071 0.9940 46 1 -1.3625 -6.6432 -0.2672 47 1 0.4031 -7.7314 -1.8457 48 1 2.4292 -5.8124 -3.5372 49 1 2.8791 -7.1761 -2.4854 50 1 3.4962 -5.5430 -2.1382 51 1 2.8633 -3.3427 -1.4101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329344744.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:48 Heat of formation + Delta-G solvation = 31.818819 kcal Electronic energy + Delta-G solvation = -30277.367056 eV Core-core repulsion = 26370.356095 eV Total energy + Delta-G solvation = -3907.010961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.35166 -41.30226 -38.90227 -37.68302 -36.44299 -34.87729 -33.79299 -32.26092 -31.40109 -30.39325 -28.86243 -28.11947 -27.39404 -27.11558 -26.78442 -24.78916 -23.61527 -22.91232 -21.41183 -20.46886 -19.83668 -19.13126 -18.42033 -17.84993 -17.36243 -17.07706 -16.59169 -16.51520 -16.25717 -15.80963 -15.44136 -15.40746 -15.11501 -14.95103 -14.77306 -14.33556 -14.22062 -14.08144 -13.93288 -13.80299 -13.72802 -13.70405 -13.30889 -13.21964 -12.96139 -12.84423 -12.65290 -12.51404 -12.42358 -12.30025 -12.12718 -12.07235 -11.94452 -11.66339 -11.63516 -11.52001 -10.94000 -10.85912 -10.66090 -9.59958 -9.18127 -8.97265 -8.59911 -7.94343 -5.22143 -0.14841 0.51779 1.45833 1.48253 1.56283 1.57096 1.77498 1.98082 2.14095 2.56605 2.90030 3.38822 3.48834 3.74378 3.83045 3.88332 3.90838 3.95381 3.96325 4.10412 4.24355 4.29083 4.37226 4.40976 4.45952 4.51152 4.54384 4.63371 4.66024 4.69268 4.75249 4.80371 4.83245 4.89419 4.92918 4.96829 5.01345 5.04216 5.13218 5.16098 5.17394 5.33766 5.40794 5.48581 5.50076 5.53331 5.57987 5.77010 5.81150 6.17443 6.28043 6.37831 6.39686 7.15384 7.34406 8.11562 8.35511 9.29603 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.002316 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.243401 B =12087.502977 C =12915.650733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.598 5.598 3 C 0.134 3.866 4 C -0.076 4.076 5 C -0.109 4.109 6 C -0.126 4.126 7 C 0.163 3.837 8 N -0.739 5.739 9 C -0.242 4.242 10 H 0.075 0.925 11 C -0.078 4.078 12 N -0.971 5.971 13 Si 0.975 3.025 14 H -0.290 1.290 15 H -0.294 1.294 16 H -0.268 1.268 17 C 0.557 3.443 18 O -0.578 6.578 19 C -0.127 4.127 20 C -0.121 4.121 21 C -0.077 4.077 22 C -0.106 4.106 23 C -0.223 4.223 24 C 0.064 3.936 25 N -0.491 5.491 26 C 0.069 3.931 27 C 0.060 3.940 28 C -0.085 4.085 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.044 0.956 35 H 0.030 0.970 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.010 0.990 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.159 0.841 45 H 0.158 0.842 46 H 0.172 0.828 47 H 0.208 0.792 48 H 0.076 0.924 49 H 0.114 0.886 50 H 0.071 0.929 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.909 -24.741 12.909 31.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.328 5.328 3 C 0.011 3.989 4 C -0.077 4.077 5 C -0.167 4.167 6 C -0.183 4.183 7 C 0.036 3.964 8 N -0.383 5.383 9 C -0.374 4.374 10 H 0.093 0.907 11 C -0.270 4.270 12 N -0.622 5.622 13 Si 0.804 3.196 14 H -0.217 1.217 15 H -0.221 1.221 16 H -0.192 1.192 17 C 0.347 3.653 18 O -0.459 6.459 19 C -0.131 4.131 20 C -0.140 4.140 21 C -0.095 4.095 22 C -0.111 4.111 23 C -0.248 4.248 24 C -0.062 4.062 25 N -0.174 5.174 26 C -0.072 4.072 27 C -0.046 4.046 28 C -0.106 4.106 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.028 0.972 42 H 0.209 0.791 43 H 0.059 0.941 44 H 0.176 0.824 45 H 0.176 0.824 46 H 0.190 0.810 47 H 0.224 0.776 48 H 0.095 0.905 49 H 0.132 0.868 50 H 0.090 0.910 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.929 -24.650 12.805 31.075 hybrid contribution 1.175 0.813 -1.125 1.818 sum -12.754 -23.838 11.680 29.451 Atomic orbital electron populations 1.22559 0.77235 1.04792 1.03520 1.47672 1.08382 1.04754 1.72039 1.21415 0.97884 0.84893 0.94720 1.21002 0.96131 0.94260 0.96346 1.21542 0.98801 0.97331 0.98987 1.21786 0.95389 1.01598 0.99540 1.20734 0.95957 0.93397 0.86296 1.42582 1.67840 1.25108 1.02741 1.19663 1.26911 0.98810 0.92024 0.90703 1.25566 1.03411 1.02520 0.95501 1.69826 1.53405 1.40816 0.98193 0.85120 0.77876 0.79544 0.77107 1.21746 1.22083 1.19246 1.18590 0.86575 0.84562 0.75612 1.90773 1.15673 1.87906 1.51511 1.19432 0.97623 0.93191 1.02875 1.21243 0.92958 0.99380 1.00393 1.20529 1.00618 0.90804 0.97523 1.19857 0.94555 0.96620 1.00088 1.22062 1.03249 0.93191 1.06267 1.22573 0.87523 0.96636 0.99472 1.44147 1.21048 1.11075 1.41131 1.22192 0.85729 1.04858 0.94380 1.18211 0.97848 0.88800 0.99749 1.19933 0.99142 0.90840 1.00703 0.89421 0.89335 0.89978 0.87283 0.91404 0.93722 0.95061 0.94583 0.91280 0.95028 0.91320 0.94965 0.97237 0.79129 0.94088 0.82415 0.82434 0.81046 0.77571 0.90542 0.86790 0.90967 0.87450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 7.62 127.77 0.97 1.91 16 2 N -0.60 -14.72 2.40 -850.49 -2.04 -16.76 16 3 C 0.13 3.73 4.59 86.38 0.40 4.13 16 4 C -0.08 -2.62 0.60 -52.18 -0.03 -2.65 16 5 C -0.11 -4.33 7.05 71.98 0.51 -3.82 16 6 C -0.13 -3.98 7.06 71.98 0.51 -3.47 16 7 C 0.16 6.88 5.15 86.38 0.44 7.33 16 8 N -0.74 -39.18 5.01 -343.46 -1.72 -40.90 16 9 C -0.24 -14.02 9.99 84.03 0.84 -13.18 16 10 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 11 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 12 N -0.97 -61.31 13.06 21.65 0.28 -61.03 16 13 Si 0.97 47.56 29.55 68.60 2.03 49.59 16 14 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 15 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 17 C 0.56 16.71 5.57 86.71 0.48 17.19 16 18 O -0.58 -22.30 15.08 -3.99 -0.06 -22.36 16 19 C -0.13 -3.24 5.23 -20.08 -0.10 -3.35 16 20 C -0.12 -2.20 7.48 22.28 0.17 -2.04 16 21 C -0.08 -1.26 10.03 22.20 0.22 -1.04 16 22 C -0.11 -2.08 6.37 -20.14 -0.13 -2.20 16 23 C -0.22 -3.16 11.08 23.49 0.26 -2.90 16 24 C 0.06 0.78 11.28 83.09 0.94 1.72 16 25 N -0.49 -8.41 3.18 -539.40 -1.71 -10.12 16 26 C 0.07 0.80 11.02 127.77 1.41 2.21 16 27 C 0.06 1.37 6.80 38.96 0.26 1.63 16 28 C -0.08 -2.27 9.52 22.63 0.22 -2.05 16 29 H 0.09 0.87 6.85 -2.39 -0.02 0.86 16 30 H 0.09 1.26 6.27 -2.39 -0.01 1.25 16 31 H 0.08 1.25 5.85 -2.39 -0.01 1.24 16 32 H 0.11 2.37 8.07 -2.39 -0.02 2.35 16 33 H 0.07 2.17 7.36 -2.39 -0.02 2.15 16 34 H 0.04 1.67 6.22 -2.39 -0.01 1.65 16 35 H 0.03 1.39 6.86 -2.39 -0.02 1.37 16 36 H 0.03 1.53 7.85 -2.39 -0.02 1.51 16 37 H 0.07 1.92 8.07 -2.39 -0.02 1.90 16 38 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 39 H 0.07 1.85 6.07 -2.39 -0.01 1.83 16 40 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.38 21.19 5.36 -92.71 -0.50 20.69 16 43 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 44 H 0.16 2.01 5.29 -2.91 -0.02 2.00 16 45 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 46 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.21 0.73 8.06 -2.91 -0.02 0.71 16 48 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 49 H 0.11 0.60 8.13 -2.39 -0.02 0.58 16 50 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 51 H 0.11 3.13 8.05 -2.91 -0.02 3.10 16 Total: -1.00 -80.47 397.51 5.05 -75.42 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.44 Total: 30.92 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 7.83 Total: -4.75 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -5.19 Total: -128.82 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.06 Total: -22.36 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -80.47 5.05 -75.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329344744.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.235 kcal (2) G-P(sol) polarization free energy of solvation -80.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds