Wall clock time and date at job start Wed Apr 1 2020 02:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46921 * 2 1 4 4 H 1.09001 * 109.47375 * 55.00127 * 3 2 1 5 5 F 1.39905 * 109.47057 * 295.00065 * 3 2 1 6 6 C 1.50703 * 109.47084 * 175.00085 * 3 2 1 7 7 O 1.21276 * 120.00057 * 44.99959 * 6 3 2 8 8 N 1.34774 * 119.99647 * 224.99823 * 6 3 2 9 9 C 1.46507 * 119.99919 * 179.97438 * 8 6 3 10 10 C 1.52990 * 109.47278 * 180.02562 * 9 8 6 11 11 C 1.53938 * 113.73658 * 271.72554 * 10 9 8 12 12 N 1.47956 * 86.18440 * 221.92342 * 11 10 9 13 13 C 1.46893 * 111.00194 * 137.58336 * 12 11 10 14 14 C 1.50702 * 109.47086 * 70.63700 * 13 12 11 15 15 O 1.21275 * 120.00293 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99793 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00028 * 0.02562 * 16 14 13 18 18 C 1.53002 * 109.47365 * 89.99743 * 17 16 14 19 19 C 1.46500 * 119.99857 * 179.97438 * 16 14 13 20 20 C 1.50699 * 109.46919 * 90.00221 * 19 16 14 21 21 H 1.08002 * 120.00084 * 0.02562 * 20 19 16 22 22 C 1.37873 * 120.00132 * 179.97438 * 20 19 16 23 23 N 1.31516 * 119.99918 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00256 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47310 * 60.00259 * 24 22 20 26 26 H 1.48504 * 109.47127 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47017 * 300.00113 * 24 22 20 28 28 C 1.47955 * 90.76307 * 24.68883 * 12 11 10 29 29 H 1.09004 * 109.46964 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47141 * 299.99499 * 1 2 3 31 31 H 1.08990 * 109.47355 * 60.00352 * 1 2 3 32 32 H 1.08994 * 109.46895 * 239.99787 * 2 1 3 33 33 H 1.09000 * 109.47312 * 119.99621 * 2 1 3 34 34 H 0.96994 * 120.00782 * 0.02562 * 8 6 3 35 35 H 1.08999 * 109.46853 * 300.00592 * 9 8 6 36 36 H 1.09003 * 109.47185 * 59.99732 * 9 8 6 37 37 H 1.09004 * 112.93939 * 43.43373 * 10 9 8 38 38 H 1.09001 * 113.75554 * 336.24107 * 11 10 9 39 39 H 1.09005 * 113.75637 * 107.60207 * 11 10 9 40 40 H 1.09000 * 109.47235 * 190.63729 * 13 12 11 41 41 H 1.09001 * 109.46843 * 310.63996 * 13 12 11 42 42 H 1.09006 * 109.47091 * 209.99571 * 17 16 14 43 43 H 1.08996 * 109.47499 * 329.99706 * 17 16 14 44 44 H 1.09005 * 109.47149 * 179.97438 * 18 17 16 45 45 H 1.09006 * 109.46876 * 299.99960 * 18 17 16 46 46 H 1.09002 * 109.47475 * 59.99833 * 18 17 16 47 47 H 1.09001 * 109.47116 * 210.00619 * 19 16 14 48 48 H 1.09005 * 109.47215 * 330.00323 * 19 16 14 49 49 H 0.97001 * 120.00295 * 180.02562 * 23 22 20 50 50 H 1.09003 * 113.76356 * 220.99416 * 28 12 11 51 51 H 1.08997 * 113.76116 * 89.62852 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 9 1.6698 2.0680 -1.1955 6 6 3.5419 1.4443 0.1238 7 8 4.2064 0.6812 -0.5446 8 7 4.1466 2.2942 0.9774 9 6 5.6066 2.2956 1.0982 10 6 6.0322 3.3450 2.1269 11 6 6.2474 4.7472 1.5290 12 7 7.4469 4.8229 2.3920 13 6 8.5812 5.4100 1.6664 14 6 8.3286 6.8789 1.4432 15 8 7.3048 7.3867 1.8489 16 7 9.2411 7.6284 0.7934 17 6 10.4782 7.0151 0.3038 18 6 10.2631 6.5004 -1.1209 19 6 8.9954 9.0562 0.5759 20 6 9.5465 9.8433 1.7368 21 1 10.0316 9.3313 2.5547 22 6 9.4322 11.2172 1.7544 23 7 8.8419 11.8407 0.7583 24 14 10.1160 12.1930 3.1931 25 1 11.5772 11.9531 3.3041 26 1 9.8667 13.6402 2.9727 27 1 9.4469 11.7612 4.4466 28 6 7.5432 3.3468 2.4215 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.6152 2.9043 1.5123 35 1 5.9454 1.3115 1.4221 36 1 6.0510 2.5327 0.1315 37 1 5.4106 3.3388 3.0223 38 1 6.4734 4.7399 0.4627 39 1 5.4690 5.4622 1.7952 40 1 9.4919 5.2828 2.2517 41 1 8.6948 4.9106 0.7043 42 1 11.2769 7.7569 0.3054 43 1 10.7532 6.1837 0.9527 44 1 11.1837 6.0445 -1.4854 45 1 9.4644 5.7586 -1.1225 46 1 9.9881 7.3318 -1.7700 47 1 9.4865 9.3733 -0.3440 48 1 7.9227 9.2319 0.4943 49 1 8.7618 12.8074 0.7705 50 1 7.8001 2.9429 3.4008 51 1 8.1481 2.9299 1.6163 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001419029956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:31 Heat of formation + Delta-G solvation = -118.663745 kcal Electronic energy + Delta-G solvation = -30119.413470 eV Core-core repulsion = 25775.107871 eV Total energy + Delta-G solvation = -4344.305599 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.95249 -41.61130 -40.68676 -39.88121 -36.91715 -36.00359 -34.96238 -34.92896 -32.48344 -31.57152 -29.91833 -28.85826 -27.45762 -27.08704 -25.21986 -24.37283 -23.45680 -22.79883 -21.77594 -20.64635 -19.92014 -18.77459 -18.63678 -18.07370 -17.96852 -17.31577 -17.26869 -16.79904 -16.49799 -16.37319 -16.25385 -15.79732 -15.64703 -15.19979 -15.06357 -14.72639 -14.70423 -14.42982 -14.20031 -13.92514 -13.81057 -13.62240 -13.48009 -13.29168 -13.26374 -13.15595 -13.00935 -12.89345 -12.65507 -12.56413 -12.32593 -12.18406 -12.02805 -11.98265 -11.86158 -11.78484 -11.71332 -11.65910 -10.90642 -10.65372 -10.52633 -10.25844 -9.74775 -9.41961 -8.23162 -6.38278 1.27092 1.35146 1.39809 1.47044 1.85306 1.88572 2.25039 2.40910 2.96006 3.05914 3.28061 3.41664 3.54363 3.63250 3.70258 3.70438 3.90129 4.06197 4.15526 4.17452 4.28602 4.35991 4.40554 4.41625 4.46420 4.49386 4.56055 4.61225 4.67207 4.74002 4.81638 4.86319 4.92234 4.96004 5.03010 5.03350 5.12660 5.16866 5.19597 5.31860 5.34329 5.34900 5.38246 5.56767 5.83851 5.97509 6.05965 6.31114 6.69649 6.81947 6.97707 7.27981 7.52122 8.83546 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.016721 B = 0.001926 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.093451 B =14534.918109 C =14959.863041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.139 4.139 3 C 0.080 3.920 4 H 0.139 0.861 5 F -0.207 7.207 6 C 0.488 3.512 7 O -0.566 6.566 8 N -0.707 5.707 9 C 0.131 3.869 10 C -0.106 4.106 11 C 0.013 3.987 12 N -0.489 5.489 13 C 0.017 3.983 14 C 0.495 3.505 15 O -0.582 6.582 16 N -0.606 5.606 17 C 0.100 3.900 18 C -0.160 4.160 19 C 0.265 3.735 20 C -0.543 4.543 21 H 0.053 0.947 22 C 0.006 3.994 23 N -0.929 5.929 24 Si 0.968 3.032 25 H -0.259 1.259 26 H -0.278 1.278 27 H -0.278 1.278 28 C 0.019 3.981 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.419 0.581 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.122 0.878 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.057 0.943 46 H 0.036 0.964 47 H 0.019 0.981 48 H -0.007 1.007 49 H 0.267 0.733 50 H 0.112 0.888 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.211 -26.845 1.553 28.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.177 4.177 3 C 0.041 3.959 4 H 0.157 0.843 5 F -0.188 7.188 6 C 0.272 3.728 7 O -0.445 6.445 8 N -0.359 5.359 9 C 0.007 3.993 10 C -0.125 4.125 11 C -0.116 4.116 12 N -0.212 5.212 13 C -0.114 4.114 14 C 0.283 3.717 15 O -0.462 6.462 16 N -0.338 5.338 17 C -0.023 4.023 18 C -0.218 4.218 19 C 0.143 3.857 20 C -0.581 4.581 21 H 0.071 0.929 22 C -0.193 4.193 23 N -0.569 5.569 24 Si 0.792 3.208 25 H -0.184 1.184 26 H -0.203 1.203 27 H -0.204 1.204 28 C -0.109 4.109 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.256 0.744 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.140 0.860 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.138 0.862 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.076 0.924 46 H 0.055 0.945 47 H 0.037 0.963 48 H 0.012 0.988 49 H 0.076 0.924 50 H 0.130 0.870 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.283 -26.518 1.789 27.839 hybrid contribution 0.172 1.372 -0.408 1.442 sum -8.111 -25.146 1.380 26.458 Atomic orbital electron populations 1.21775 0.92846 1.03386 1.02874 1.21992 0.98322 0.92698 1.04676 1.21921 0.90398 0.97511 0.86109 0.84319 1.92865 1.92000 1.84288 1.49617 1.21441 0.91397 0.80305 0.79648 1.90718 1.67282 1.41200 1.45295 1.46048 1.08539 1.38813 1.42544 1.21433 0.79516 0.99771 0.98585 1.23150 0.98105 0.92191 0.99066 1.23907 0.94649 0.97311 0.95773 1.68442 1.02569 1.10965 1.39208 1.22611 0.97971 0.90514 1.00334 1.21196 0.83092 0.89930 0.77451 1.90628 1.29241 1.75083 1.51267 1.48306 1.20055 1.09920 1.55568 1.21736 0.85777 0.98576 0.96172 1.22152 1.03264 1.00699 0.95710 1.18645 0.94820 0.76723 0.95501 1.21684 1.37943 0.92277 1.06224 0.92915 1.25885 0.95465 0.98816 0.99125 1.70050 1.44081 1.09551 1.33179 0.85461 0.79310 0.77245 0.78752 1.18386 1.20312 1.20354 1.24084 0.94946 0.87547 1.04335 0.90828 0.90645 0.92928 0.91598 0.88391 0.74405 0.89668 0.92354 0.86021 0.91991 0.91373 0.86194 0.89140 0.91041 0.88093 0.88528 0.92409 0.94460 0.96260 0.98844 0.92425 0.87017 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.83 71.98 0.71 -0.56 16 2 C -0.14 -1.61 5.41 30.59 0.17 -1.44 16 3 C 0.08 1.06 3.77 29.85 0.11 1.18 16 4 H 0.14 0.76 7.99 -2.39 -0.02 0.74 16 5 F -0.21 -4.14 16.75 44.97 0.75 -3.39 16 6 C 0.49 8.92 7.17 87.66 0.63 9.55 16 7 O -0.57 -15.20 16.61 -3.02 -0.05 -15.25 16 8 N -0.71 -9.64 5.56 -463.07 -2.57 -12.21 16 9 C 0.13 1.89 5.53 86.37 0.48 2.37 16 10 C -0.11 -1.57 3.94 -10.15 -0.04 -1.61 16 11 C 0.01 0.31 6.31 86.41 0.55 0.85 16 12 N -0.49 -12.72 5.95 -912.33 -5.43 -18.15 16 13 C 0.02 0.46 3.86 85.56 0.33 0.79 16 14 C 0.49 20.63 7.48 87.66 0.66 21.29 16 15 O -0.58 -30.51 15.13 -3.02 -0.05 -30.56 16 16 N -0.61 -25.86 2.46 -826.15 -2.03 -27.89 16 17 C 0.10 3.01 5.93 86.38 0.51 3.52 16 18 C -0.16 -3.94 10.24 71.98 0.74 -3.20 16 19 C 0.26 14.58 5.16 85.63 0.44 15.02 16 20 C -0.54 -31.88 9.39 25.60 0.24 -31.64 16 21 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 22 C 0.01 0.35 5.46 84.65 0.46 0.81 16 23 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 24 Si 0.97 45.54 29.54 68.60 2.03 47.56 16 25 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 28 C 0.02 0.29 7.54 86.41 0.65 0.94 16 29 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.56 7.93 -2.39 -0.02 0.54 16 32 H 0.07 1.05 8.05 -2.39 -0.02 1.03 16 33 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.42 3.54 8.36 -92.71 -0.78 2.76 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.05 7.84 -2.39 -0.02 1.03 16 37 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.06 1.56 7.53 -2.39 -0.02 1.55 16 39 H 0.07 2.04 8.09 -2.38 -0.02 2.03 16 40 H 0.12 2.78 7.40 -2.39 -0.02 2.77 16 41 H 0.09 1.95 6.74 -2.39 -0.02 1.94 16 42 H 0.07 2.32 8.07 -2.38 -0.02 2.30 16 43 H 0.10 2.28 6.44 -2.39 -0.02 2.27 16 44 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 45 H 0.06 1.31 7.22 -2.38 -0.02 1.29 16 46 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 48 H -0.01 -0.42 7.42 -2.38 -0.02 -0.44 16 49 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 50 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.09 1.08 7.75 -2.39 -0.02 1.06 16 Total: -1.00 -85.55 419.77 -0.29 -85.84 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.14 Total: 13.01 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 6.63 Total: 17.86 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -9.74 Total: -115.07 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -0.10 Total: -45.81 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.75 Total: -3.39 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -85.55 -0.29 -85.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001419029956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.828 kcal (2) G-P(sol) polarization free energy of solvation -85.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds