Wall clock time and date at job start Wed Apr 1 2020 02:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46906 * 2 1 4 4 H 1.08998 * 109.47566 * 304.99754 * 3 2 1 5 5 F 1.39897 * 109.47285 * 65.00005 * 3 2 1 6 6 C 1.50703 * 109.46946 * 184.99558 * 3 2 1 7 7 O 1.21284 * 119.99899 * 315.00563 * 6 3 2 8 8 N 1.34772 * 119.99675 * 134.99878 * 6 3 2 9 9 C 1.46508 * 119.99681 * 180.02562 * 8 6 3 10 10 H 1.08995 * 110.87565 * 37.38839 * 9 8 6 11 11 C 1.55142 * 110.98869 * 273.54471 * 9 8 6 12 12 C 1.54317 * 103.01999 * 206.25424 * 11 9 8 13 13 N 1.47442 * 107.23050 * 22.28722 * 12 11 9 14 14 C 1.46904 * 111.00249 * 123.25886 * 13 12 11 15 15 C 1.50700 * 109.47192 * 69.86951 * 14 13 12 16 16 O 1.21283 * 119.99803 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99675 * 180.28082 * 15 14 13 18 18 C 1.46496 * 120.00345 * 359.72090 * 17 15 14 19 19 C 1.53005 * 109.46942 * 90.00092 * 18 17 15 20 20 C 1.46497 * 119.99525 * 179.72583 * 17 15 14 21 21 C 1.50709 * 109.47273 * 89.99834 * 20 17 15 22 22 H 1.07999 * 119.99476 * 359.97438 * 21 20 17 23 23 C 1.37873 * 120.00210 * 179.97438 * 21 20 17 24 24 N 1.31510 * 120.00400 * 179.97438 * 23 21 20 25 25 Si 1.86811 * 119.99937 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.46951 * 89.99952 * 25 23 21 27 27 H 1.48501 * 109.46896 * 209.99905 * 25 23 21 28 28 H 1.48500 * 109.46904 * 329.99741 * 25 23 21 29 29 C 1.47839 * 108.57014 * 0.98669 * 13 12 11 30 30 H 1.08999 * 109.46838 * 60.00370 * 1 2 3 31 31 H 1.09004 * 109.46916 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47230 * 300.00573 * 1 2 3 33 33 H 1.08999 * 109.47627 * 239.99783 * 2 1 3 34 34 H 1.08999 * 109.46838 * 119.99630 * 2 1 3 35 35 H 0.96995 * 120.00544 * 0.02562 * 8 6 3 36 36 H 1.09001 * 110.70355 * 87.87035 * 11 9 8 37 37 H 1.08999 * 110.70800 * 324.63869 * 11 9 8 38 38 H 1.09001 * 109.88942 * 262.88213 * 12 11 9 39 39 H 1.08997 * 110.02514 * 141.76486 * 12 11 9 40 40 H 1.09009 * 109.46542 * 309.86981 * 14 13 12 41 41 H 1.08998 * 109.47050 * 189.87516 * 14 13 12 42 42 H 1.08995 * 109.47364 * 210.00706 * 18 17 15 43 43 H 1.09002 * 109.47090 * 330.00257 * 18 17 15 44 44 H 1.09002 * 109.47083 * 180.02562 * 19 18 17 45 45 H 1.08998 * 109.46999 * 300.00039 * 19 18 17 46 46 H 1.08997 * 109.46656 * 60.00331 * 19 18 17 47 47 H 1.09000 * 109.46889 * 209.99487 * 20 17 15 48 48 H 1.09001 * 109.47460 * 330.00097 * 20 17 15 49 49 H 0.97001 * 120.00447 * 180.02562 * 24 23 21 50 50 H 1.09001 * 110.37459 * 94.73330 * 29 13 12 51 51 H 1.09002 * 110.37701 * 217.07785 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 9 1.6699 2.0680 1.1954 6 6 3.5419 1.4443 -0.1237 7 8 4.2064 0.6810 0.5447 8 7 4.1467 2.2941 -0.9773 9 6 5.6068 2.2954 -1.0980 10 1 6.0035 1.2829 -1.0251 11 6 6.2514 3.2228 -0.0343 12 6 7.5847 3.6338 -0.6937 13 7 7.4265 3.4531 -2.1484 14 6 7.6970 4.7054 -2.8671 15 6 9.1678 5.0234 -2.7863 16 8 9.9171 4.2797 -2.1893 17 7 9.6497 6.1369 -3.3732 18 6 8.7447 7.0349 -4.0948 19 6 8.1965 8.0890 -3.1307 20 6 11.0786 6.4491 -3.2895 21 6 11.7983 5.8259 -4.4579 22 1 11.2464 5.2541 -5.1892 23 6 13.1610 5.9857 -4.5930 24 7 13.7891 5.4414 -5.6122 25 14 14.1156 6.9742 -3.3275 26 1 14.5792 6.0727 -2.2424 27 1 15.2892 7.6097 -3.9785 28 1 13.2369 8.0260 -2.7557 29 6 6.0539 2.9740 -2.4168 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8935 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.6153 2.9047 -1.5117 36 1 6.4316 2.6787 0.8929 37 1 5.6250 4.0965 0.1458 38 1 8.3911 2.9990 -0.3266 39 1 7.8046 4.6780 -0.4716 40 1 7.1247 5.5151 -2.4140 41 1 7.4059 4.5950 -3.9117 42 1 9.2882 7.5275 -4.9010 43 1 7.9184 6.4595 -4.5122 44 1 7.5228 8.7569 -3.6675 45 1 7.6530 7.5963 -2.3245 46 1 9.0228 8.6644 -2.7134 47 1 11.2162 7.5301 -3.3128 48 1 11.4837 6.0511 -2.3591 49 1 14.7479 5.5536 -5.7071 50 1 5.3988 3.8124 -2.6533 51 1 6.0569 2.2516 -3.2331 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490554315.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:51 Heat of formation + Delta-G solvation = -111.224909 kcal Electronic energy + Delta-G solvation = -30475.868604 eV Core-core repulsion = 26131.885577 eV Total energy + Delta-G solvation = -4343.983027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.34333 -40.43883 -39.48172 -38.17109 -35.41164 -34.76307 -34.48459 -32.74616 -31.46390 -30.34625 -29.19288 -28.44237 -27.55624 -25.81220 -23.01400 -22.94965 -22.35772 -21.33869 -21.32605 -20.65454 -18.37176 -18.27354 -17.40451 -16.91031 -16.64980 -16.54138 -16.17016 -15.97621 -15.43416 -15.13094 -14.77633 -14.57531 -14.33153 -14.12342 -13.85977 -13.62774 -13.53047 -13.47016 -13.39010 -12.85120 -12.80633 -12.66712 -12.43252 -12.41918 -12.14987 -11.93487 -11.78817 -11.69736 -11.61897 -11.50044 -11.40816 -11.39482 -10.99022 -10.92023 -10.69354 -10.49588 -10.20546 -10.14757 -9.54967 -9.51954 -9.00934 -8.57568 -8.30138 -7.70627 -6.07204 -4.05702 1.96937 2.41889 3.29490 3.34824 3.35806 3.37496 3.56718 3.87230 3.94804 4.06821 4.16121 4.29944 4.35583 4.40555 4.48354 4.79522 4.81583 4.90032 4.95092 5.04227 5.11590 5.14539 5.16818 5.24216 5.26760 5.38409 5.40841 5.45437 5.51379 5.55974 5.62381 5.66323 5.68505 5.73040 5.81329 5.91844 5.98410 6.10776 6.21542 6.33848 6.65915 6.84073 6.86587 6.92164 6.98451 7.36975 7.61808 7.62803 8.26956 8.48795 8.95504 9.03293 9.53237 11.06228 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.001924 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.335133 B =14551.385044 C =14852.068464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.142 4.142 3 C 0.084 3.916 4 H 0.100 0.900 5 F -0.189 7.189 6 C 0.493 3.507 7 O -0.514 6.514 8 N -0.713 5.713 9 C 0.134 3.866 10 H 0.108 0.892 11 C -0.154 4.154 12 C 0.055 3.945 13 N -0.505 5.505 14 C 0.034 3.966 15 C 0.508 3.492 16 O -0.520 6.520 17 N -0.596 5.596 18 C 0.107 3.893 19 C -0.169 4.169 20 C 0.218 3.782 21 C -0.527 4.527 22 H 0.074 0.926 23 C 0.072 3.928 24 N -0.897 5.897 25 Si 0.876 3.124 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.267 1.267 29 C 0.040 3.960 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.402 0.598 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.028 0.972 48 H 0.035 0.965 49 H 0.264 0.736 50 H 0.051 0.949 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.771 -2.575 7.594 29.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.180 4.180 3 C 0.045 3.955 4 H 0.118 0.882 5 F -0.170 7.170 6 C 0.276 3.724 7 O -0.388 6.388 8 N -0.365 5.365 9 C 0.029 3.971 10 H 0.126 0.874 11 C -0.193 4.193 12 C -0.073 4.073 13 N -0.229 5.229 14 C -0.098 4.098 15 C 0.293 3.707 16 O -0.395 6.395 17 N -0.329 5.329 18 C -0.018 4.018 19 C -0.228 4.228 20 C 0.098 3.902 21 C -0.566 4.566 22 H 0.092 0.908 23 C -0.130 4.130 24 N -0.536 5.536 25 Si 0.703 3.297 26 H -0.199 1.199 27 H -0.211 1.211 28 H -0.192 1.192 29 C -0.089 4.089 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.237 0.763 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.117 0.883 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.046 0.954 48 H 0.053 0.947 49 H 0.074 0.926 50 H 0.070 0.930 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -27.303 -3.897 8.168 28.763 hybrid contribution -0.191 1.640 0.448 1.710 sum -27.494 -2.257 8.616 28.901 Atomic orbital electron populations 1.21779 0.94018 1.02796 1.02522 1.22005 0.97373 0.93381 1.05229 1.21636 0.91798 0.96492 0.85619 0.88223 1.92894 1.91996 1.83877 1.48252 1.21002 0.90365 0.80769 0.80291 1.90768 1.66052 1.38976 1.42994 1.45998 1.07869 1.39435 1.43217 1.22186 0.78511 1.01440 0.94943 0.87362 1.23230 0.97180 0.99384 0.99519 1.22763 0.96736 1.01454 0.86366 1.63257 1.23136 1.28564 1.07955 1.22288 0.95770 0.91141 1.00555 1.20100 0.89252 0.81293 0.80016 1.90681 1.59131 1.47358 1.42292 1.47937 1.09840 1.22439 1.52680 1.21421 0.93445 0.91895 0.94994 1.22238 1.01164 0.99404 0.99974 1.19617 0.76404 0.95751 0.98457 1.21336 0.93022 1.33505 1.08718 0.90752 1.24858 0.97418 0.95397 0.95359 1.69894 1.09373 1.44589 1.29741 0.86859 0.79987 0.80798 0.82070 1.19920 1.21106 1.19151 1.23248 0.89438 0.99110 0.97064 0.92295 0.91585 0.91892 0.89646 0.89339 0.76297 0.89996 0.91301 0.89219 0.92477 0.92320 0.88282 0.89672 0.91612 0.92005 0.93259 0.92165 0.95388 0.94687 0.92595 0.93044 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.83 37.16 0.37 -0.31 16 2 C -0.14 -0.84 5.41 -26.73 -0.14 -0.99 16 3 C 0.08 0.55 3.77 -27.88 -0.11 0.44 16 4 H 0.10 0.30 7.99 -51.93 -0.42 -0.12 16 5 F -0.19 -1.71 16.75 2.25 0.04 -1.67 16 6 C 0.49 4.53 7.17 -10.99 -0.08 4.45 16 7 O -0.51 -6.93 16.35 5.55 0.09 -6.84 16 8 N -0.71 -5.16 5.23 -51.73 -0.27 -5.43 16 9 C 0.13 1.29 3.31 -65.79 -0.22 1.08 16 10 H 0.11 1.26 7.73 -51.93 -0.40 0.86 16 11 C -0.15 -1.64 6.64 -24.91 -0.17 -1.81 16 12 C 0.05 0.73 5.65 -2.84 -0.02 0.72 16 13 N -0.50 -6.94 4.85 -232.69 -1.13 -8.07 16 14 C 0.03 0.47 3.58 -4.97 -0.02 0.45 16 15 C 0.51 10.06 7.32 -10.98 -0.08 9.98 16 16 O -0.52 -12.66 15.13 5.55 0.08 -12.58 16 17 N -0.60 -11.87 2.46 -175.06 -0.43 -12.30 16 18 C 0.11 1.57 5.93 -4.04 -0.02 1.55 16 19 C -0.17 -2.00 10.24 37.16 0.38 -1.62 16 20 C 0.22 5.29 4.23 -5.19 -0.02 5.27 16 21 C -0.53 -15.13 9.94 -34.44 -0.34 -15.48 16 22 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 23 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 24 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 25 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 26 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 29 C 0.04 0.38 6.31 -2.30 -0.01 0.36 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.32 7.93 -51.93 -0.41 -0.10 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.67 8.05 -51.93 -0.42 0.26 16 35 H 0.40 1.60 8.41 -40.82 -0.34 1.26 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.06 0.79 7.31 -51.93 -0.38 0.41 16 40 H 0.06 0.67 6.98 -51.92 -0.36 0.31 16 41 H 0.10 1.22 7.34 -51.93 -0.38 0.84 16 42 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 43 H 0.07 0.79 6.45 -51.93 -0.33 0.46 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.55 7.20 -51.93 -0.37 0.17 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 48 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 49 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 50 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 51 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 412.47 15.07 6.22 6.22 Total: -1.00 -37.16 412.47 -8.64 -45.79 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -8.76 Total: -1.22 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -0.58 Total: 6.09 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -1.06 Total: -52.79 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.17 Total: -19.42 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -37.16 -8.64 -45.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490554315.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.431 kcal (2) G-P(sol) polarization free energy of solvation -37.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds