Wall clock time and date at job start Wed Apr 1 2020 02:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46906 * 2 1 4 4 H 1.08998 * 109.47566 * 304.99754 * 3 2 1 5 5 F 1.39897 * 109.47285 * 65.00005 * 3 2 1 6 6 C 1.50703 * 109.46946 * 184.99558 * 3 2 1 7 7 O 1.21284 * 119.99899 * 315.00563 * 6 3 2 8 8 N 1.34772 * 119.99675 * 134.99878 * 6 3 2 9 9 C 1.46508 * 119.99681 * 180.02562 * 8 6 3 10 10 H 1.08995 * 110.87565 * 37.38839 * 9 8 6 11 11 C 1.55142 * 110.98869 * 273.54471 * 9 8 6 12 12 C 1.54317 * 103.01999 * 206.25424 * 11 9 8 13 13 N 1.47442 * 107.23050 * 22.28722 * 12 11 9 14 14 C 1.46904 * 111.00249 * 123.25886 * 13 12 11 15 15 C 1.50700 * 109.47192 * 69.86951 * 14 13 12 16 16 O 1.21283 * 119.99803 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99675 * 180.28082 * 15 14 13 18 18 C 1.46496 * 120.00345 * 359.72090 * 17 15 14 19 19 C 1.53005 * 109.46942 * 90.00092 * 18 17 15 20 20 C 1.46497 * 119.99525 * 179.72583 * 17 15 14 21 21 C 1.50709 * 109.47273 * 89.99834 * 20 17 15 22 22 H 1.07999 * 119.99476 * 359.97438 * 21 20 17 23 23 C 1.37873 * 120.00210 * 179.97438 * 21 20 17 24 24 N 1.31510 * 120.00400 * 179.97438 * 23 21 20 25 25 Si 1.86811 * 119.99937 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.46951 * 89.99952 * 25 23 21 27 27 H 1.48501 * 109.46896 * 209.99905 * 25 23 21 28 28 H 1.48500 * 109.46904 * 329.99741 * 25 23 21 29 29 C 1.47839 * 108.57014 * 0.98669 * 13 12 11 30 30 H 1.08999 * 109.46838 * 60.00370 * 1 2 3 31 31 H 1.09004 * 109.46916 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47230 * 300.00573 * 1 2 3 33 33 H 1.08999 * 109.47627 * 239.99783 * 2 1 3 34 34 H 1.08999 * 109.46838 * 119.99630 * 2 1 3 35 35 H 0.96995 * 120.00544 * 0.02562 * 8 6 3 36 36 H 1.09001 * 110.70355 * 87.87035 * 11 9 8 37 37 H 1.08999 * 110.70800 * 324.63869 * 11 9 8 38 38 H 1.09001 * 109.88942 * 262.88213 * 12 11 9 39 39 H 1.08997 * 110.02514 * 141.76486 * 12 11 9 40 40 H 1.09009 * 109.46542 * 309.86981 * 14 13 12 41 41 H 1.08998 * 109.47050 * 189.87516 * 14 13 12 42 42 H 1.08995 * 109.47364 * 210.00706 * 18 17 15 43 43 H 1.09002 * 109.47090 * 330.00257 * 18 17 15 44 44 H 1.09002 * 109.47083 * 180.02562 * 19 18 17 45 45 H 1.08998 * 109.46999 * 300.00039 * 19 18 17 46 46 H 1.08997 * 109.46656 * 60.00331 * 19 18 17 47 47 H 1.09000 * 109.46889 * 209.99487 * 20 17 15 48 48 H 1.09001 * 109.47460 * 330.00097 * 20 17 15 49 49 H 0.97001 * 120.00447 * 180.02562 * 24 23 21 50 50 H 1.09001 * 110.37459 * 94.73330 * 29 13 12 51 51 H 1.09002 * 110.37701 * 217.07785 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 9 1.6699 2.0680 1.1954 6 6 3.5419 1.4443 -0.1237 7 8 4.2064 0.6810 0.5447 8 7 4.1467 2.2941 -0.9773 9 6 5.6068 2.2954 -1.0980 10 1 6.0035 1.2829 -1.0251 11 6 6.2514 3.2228 -0.0343 12 6 7.5847 3.6338 -0.6937 13 7 7.4265 3.4531 -2.1484 14 6 7.6970 4.7054 -2.8671 15 6 9.1678 5.0234 -2.7863 16 8 9.9171 4.2797 -2.1893 17 7 9.6497 6.1369 -3.3732 18 6 8.7447 7.0349 -4.0948 19 6 8.1965 8.0890 -3.1307 20 6 11.0786 6.4491 -3.2895 21 6 11.7983 5.8259 -4.4579 22 1 11.2464 5.2541 -5.1892 23 6 13.1610 5.9857 -4.5930 24 7 13.7891 5.4414 -5.6122 25 14 14.1156 6.9742 -3.3275 26 1 14.5792 6.0727 -2.2424 27 1 15.2892 7.6097 -3.9785 28 1 13.2369 8.0260 -2.7557 29 6 6.0539 2.9740 -2.4168 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8935 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.6153 2.9047 -1.5117 36 1 6.4316 2.6787 0.8929 37 1 5.6250 4.0965 0.1458 38 1 8.3911 2.9990 -0.3266 39 1 7.8046 4.6780 -0.4716 40 1 7.1247 5.5151 -2.4140 41 1 7.4059 4.5950 -3.9117 42 1 9.2882 7.5275 -4.9010 43 1 7.9184 6.4595 -4.5122 44 1 7.5228 8.7569 -3.6675 45 1 7.6530 7.5963 -2.3245 46 1 9.0228 8.6644 -2.7134 47 1 11.2162 7.5301 -3.3128 48 1 11.4837 6.0511 -2.3591 49 1 14.7479 5.5536 -5.7071 50 1 5.3988 3.8124 -2.6533 51 1 6.0569 2.2516 -3.2331 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490554315.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:50 Heat of formation + Delta-G solvation = -139.864574 kcal Electronic energy + Delta-G solvation = -30477.110513 eV Core-core repulsion = 26131.885577 eV Total energy + Delta-G solvation = -4345.224936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.94002 -41.35340 -40.69287 -39.27365 -36.92547 -35.66949 -34.95649 -34.83691 -32.55900 -31.74082 -30.02686 -29.84628 -28.44092 -27.03019 -24.42055 -23.94202 -23.49631 -22.25982 -22.05144 -21.52105 -19.78612 -19.09354 -18.95175 -18.09475 -17.93102 -17.41564 -17.17556 -16.89641 -16.57649 -16.25957 -16.10950 -15.58223 -15.36981 -15.06113 -14.87175 -14.71263 -14.66639 -14.50514 -14.36145 -14.04368 -13.92453 -13.76386 -13.56496 -13.28236 -13.27087 -13.14485 -12.90917 -12.80131 -12.55107 -12.53840 -12.48214 -12.37557 -12.02805 -12.01559 -11.89728 -11.83880 -11.79636 -11.73350 -10.93906 -10.83257 -10.57069 -10.28849 -9.40252 -9.26073 -8.33814 -6.38148 1.26269 1.30739 1.35468 1.43202 1.73861 1.87245 2.27512 2.30329 2.97526 3.00740 3.35858 3.45175 3.50530 3.58971 3.69535 3.79926 3.91772 3.96545 4.11244 4.20760 4.22999 4.28655 4.40319 4.41447 4.44572 4.51532 4.55807 4.65467 4.74391 4.79315 4.81843 4.86290 4.92077 4.94702 5.02128 5.02859 5.05489 5.11162 5.15802 5.29900 5.35861 5.40049 5.48124 5.67745 5.85725 5.96665 6.26188 6.32323 6.63397 6.78511 7.00702 7.23091 7.51892 8.83133 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.025349 B = 0.001924 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.335133 B =14551.385044 C =14852.068464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 C 0.087 3.913 4 H 0.148 0.852 5 F -0.204 7.204 6 C 0.489 3.511 7 O -0.566 6.566 8 N -0.693 5.693 9 C 0.140 3.860 10 H 0.081 0.919 11 C -0.142 4.142 12 C 0.061 3.939 13 N -0.537 5.537 14 C 0.049 3.951 15 C 0.494 3.506 16 O -0.580 6.580 17 N -0.604 5.604 18 C 0.098 3.902 19 C -0.160 4.160 20 C 0.228 3.772 21 C -0.533 4.533 22 H 0.029 0.971 23 C 0.010 3.990 24 N -0.945 5.945 25 Si 0.946 3.054 26 H -0.279 1.279 27 H -0.274 1.274 28 H -0.238 1.238 29 C 0.048 3.952 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.423 0.577 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.042 0.958 47 H 0.047 0.953 48 H 0.013 0.987 49 H 0.268 0.732 50 H 0.091 0.909 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.318 -0.136 7.329 33.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.048 3.952 4 H 0.165 0.835 5 F -0.185 7.185 6 C 0.273 3.727 7 O -0.444 6.444 8 N -0.346 5.346 9 C 0.034 3.966 10 H 0.099 0.901 11 C -0.182 4.182 12 C -0.068 4.068 13 N -0.263 5.263 14 C -0.082 4.082 15 C 0.283 3.717 16 O -0.459 6.459 17 N -0.336 5.336 18 C -0.024 4.024 19 C -0.218 4.218 20 C 0.105 3.895 21 C -0.572 4.572 22 H 0.048 0.952 23 C -0.188 4.188 24 N -0.585 5.585 25 Si 0.769 3.231 26 H -0.205 1.205 27 H -0.199 1.199 28 H -0.161 1.161 29 C -0.079 4.079 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.262 0.738 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.115 0.885 41 H 0.141 0.859 42 H 0.088 0.912 43 H 0.118 0.882 44 H 0.114 0.886 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.031 0.969 49 H 0.077 0.923 50 H 0.109 0.891 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -30.939 -1.397 7.857 31.952 hybrid contribution 0.900 0.790 0.442 1.277 sum -30.039 -0.606 8.299 31.170 Atomic orbital electron populations 1.21766 0.92576 1.03314 1.03070 1.22017 0.98530 0.93082 1.04471 1.21862 0.89681 0.97325 0.86363 0.83498 1.92867 1.91900 1.84146 1.49577 1.21600 0.91566 0.79971 0.79526 1.90755 1.67422 1.41113 1.45089 1.45784 1.06857 1.39177 1.42779 1.21900 0.79829 0.99861 0.94982 0.90073 1.23103 0.96144 1.00115 0.98799 1.22550 0.97018 1.00238 0.86948 1.63091 1.26391 1.29000 1.07782 1.22207 0.91199 0.92460 1.02287 1.21288 0.91770 0.80143 0.78519 1.90651 1.61267 1.49176 1.44823 1.48073 1.08734 1.23652 1.53111 1.21780 0.93254 0.92290 0.95096 1.22156 1.01140 0.98679 0.99790 1.19227 0.79151 0.95924 0.95194 1.21586 0.93440 1.32984 1.09172 0.95248 1.25845 0.98635 0.96736 0.97588 1.70047 1.09931 1.46530 1.32032 0.85739 0.78857 0.79661 0.78812 1.20522 1.19920 1.16129 1.23262 0.87706 1.00367 0.96574 0.90318 0.91183 0.92690 0.88726 0.91939 0.73764 0.91674 0.89147 0.93045 0.92965 0.88538 0.85929 0.91156 0.88238 0.88629 0.92029 0.93831 0.93557 0.96861 0.92342 0.89066 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.83 71.98 0.71 -0.29 16 2 C -0.14 -1.50 5.41 30.60 0.17 -1.33 16 3 C 0.09 0.91 3.77 29.85 0.11 1.02 16 4 H 0.15 0.17 7.99 -2.39 -0.02 0.15 16 5 F -0.20 -3.32 16.75 44.97 0.75 -2.56 16 6 C 0.49 8.23 7.17 87.66 0.63 8.86 16 7 O -0.57 -15.54 16.35 -3.04 -0.05 -15.59 16 8 N -0.69 -7.99 5.23 -435.98 -2.28 -10.27 16 9 C 0.14 2.48 3.31 46.38 0.15 2.64 16 10 H 0.08 1.92 7.73 -2.39 -0.02 1.91 16 11 C -0.14 -2.90 6.64 31.78 0.21 -2.69 16 12 C 0.06 1.63 5.65 86.65 0.49 2.12 16 13 N -0.54 -14.00 4.85 -890.10 -4.32 -18.32 16 14 C 0.05 1.22 3.58 85.56 0.31 1.53 16 15 C 0.49 19.44 7.32 87.66 0.64 20.09 16 16 O -0.58 -29.39 15.13 -3.04 -0.05 -29.44 16 17 N -0.60 -23.65 2.46 -826.15 -2.03 -25.68 16 18 C 0.10 2.62 5.93 86.38 0.51 3.14 16 19 C -0.16 -3.13 10.24 71.98 0.74 -2.39 16 20 C 0.23 11.11 4.23 85.64 0.36 11.48 16 21 C -0.53 -31.65 9.94 25.60 0.25 -31.39 16 22 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 23 C 0.01 0.59 5.47 84.65 0.46 1.05 16 24 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 25 Si 0.95 45.16 27.47 68.60 1.88 47.05 16 26 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 27 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 28 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 29 C 0.05 0.75 6.31 86.77 0.55 1.30 16 30 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.05 0.46 7.93 -2.39 -0.02 0.44 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.98 8.05 -2.39 -0.02 0.96 16 35 H 0.42 1.31 8.41 -92.71 -0.78 0.53 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.05 1.42 7.31 -2.39 -0.02 1.40 16 40 H 0.10 1.71 6.98 -2.38 -0.02 1.69 16 41 H 0.12 2.51 7.34 -2.39 -0.02 2.49 16 42 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 43 H 0.10 1.98 6.45 -2.39 -0.02 1.97 16 44 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 1.07 7.20 -2.39 -0.02 1.05 16 46 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.05 2.08 7.13 -2.39 -0.02 2.07 16 48 H 0.01 0.71 6.85 -2.39 -0.02 0.69 16 49 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 50 H 0.09 0.75 7.67 -2.39 -0.02 0.73 16 51 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -89.56 412.47 0.59 -88.97 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.09 Total: 10.83 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 6.29 Total: 15.13 kcal Atomic # 7 Polarization: -106.06 SS G_CDS: -8.33 Total: -114.39 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -0.10 Total: -45.03 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.75 Total: -2.56 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.05 kcal Total: -89.56 0.59 -88.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490554315.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.898 kcal (2) G-P(sol) polarization free energy of solvation -89.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds