Wall clock time and date at job start Wed Apr 1 2020 03:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.50217 * 2 1 4 4 C 1.53039 * 109.52506 * 239.91842 * 2 1 3 5 5 C 1.53042 * 109.53930 * 178.67061 * 4 2 1 6 6 C 1.53191 * 109.31336 * 61.36679 * 5 4 2 7 7 N 1.46928 * 108.77371 * 305.36434 * 6 5 4 8 8 C 1.34778 * 120.62934 * 233.60943 * 7 6 5 9 9 O 1.21511 * 119.99533 * 183.46053 * 8 7 6 10 10 C 1.48148 * 120.00275 * 3.45947 * 8 7 6 11 11 C 1.39837 * 120.91867 * 313.56917 * 10 8 7 12 12 C 1.38133 * 118.99850 * 179.79417 * 11 10 8 13 13 N 1.31831 * 120.89941 * 0.49081 * 12 11 10 14 14 C 1.31795 * 122.04449 * 359.73473 * 13 12 11 15 15 C 1.50699 * 119.54990 * 180.02562 * 14 13 12 16 16 C 1.53001 * 117.49876 * 163.76951 * 15 14 13 17 17 C 1.53006 * 117.49939 * 95.10961 * 15 14 13 18 18 C 1.38177 * 120.90050 * 0.02562 * 14 13 12 19 19 C 1.46927 * 118.73729 * 53.60798 * 7 6 5 20 20 H 1.08999 * 109.70131 * 66.25157 * 19 7 6 21 21 C 1.52997 * 109.58469 * 186.60340 * 19 7 6 22 22 N 1.46507 * 109.46954 * 284.83074 * 21 19 7 23 23 C 1.36942 * 119.99515 * 185.33813 * 22 21 19 24 24 H 1.07992 * 120.00499 * 359.97438 * 23 22 21 25 25 C 1.38816 * 119.99730 * 180.27304 * 23 22 21 26 26 N 1.31615 * 120.00198 * 179.72346 * 25 23 22 27 27 Si 1.86802 * 119.99681 * 359.72598 * 25 23 22 28 28 H 1.48495 * 109.47195 * 90.00156 * 27 25 23 29 29 H 1.48506 * 109.46847 * 209.99648 * 27 25 23 30 30 H 1.48499 * 109.47580 * 329.99705 * 27 25 23 31 31 H 1.09005 * 109.47309 * 299.93831 * 1 2 3 32 32 H 1.09002 * 109.46942 * 59.93006 * 1 2 3 33 33 H 1.08994 * 109.47662 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46150 * 298.69072 * 4 2 1 35 35 H 1.08999 * 109.45859 * 58.65230 * 4 2 1 36 36 H 1.08998 * 109.49624 * 181.32222 * 5 4 2 37 37 H 1.09005 * 109.49420 * 301.41333 * 5 4 2 38 38 H 1.09000 * 109.58695 * 65.15198 * 6 5 4 39 39 H 1.09002 * 109.58308 * 185.44039 * 6 5 4 40 40 H 1.07993 * 120.50535 * 359.97438 * 11 10 8 41 41 H 1.07996 * 119.54841 * 180.22216 * 12 11 10 42 42 H 1.08998 * 115.55149 * 309.43288 * 15 14 13 43 43 H 1.08999 * 117.50040 * 359.97438 * 16 15 14 44 44 H 1.09007 * 117.49935 * 145.02257 * 16 15 14 45 45 H 1.08999 * 117.49325 * 214.97706 * 17 15 14 46 46 H 1.08998 * 117.49776 * 359.97329 * 17 15 14 47 47 H 1.07994 * 120.50284 * 179.97438 * 18 14 13 48 48 H 1.08999 * 109.47630 * 164.83364 * 21 19 7 49 49 H 1.08999 * 109.47693 * 44.82653 * 21 19 7 50 50 H 0.96996 * 120.00348 * 5.33478 * 22 21 19 51 51 H 0.97000 * 120.00194 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7230 -1.2481 5 6 3.5715 -0.6943 -1.2653 6 6 4.1059 -1.4257 -0.0299 7 7 3.5046 -0.8282 1.1702 8 6 4.2807 -0.3847 2.1789 9 8 3.7701 0.0496 3.1924 10 6 5.7561 -0.4266 2.0520 11 6 6.4044 -1.5724 1.5803 12 6 7.7816 -1.5665 1.4738 13 7 8.4828 -0.5048 1.8186 14 6 7.9120 0.5933 2.2719 15 6 8.7681 1.7746 2.6492 16 6 8.0744 3.1298 2.8019 17 6 8.9755 2.8627 1.5937 18 6 6.5392 0.6760 2.4059 19 6 2.0412 -0.7235 1.2498 20 1 1.6036 -1.7205 1.2995 21 6 1.6510 0.0707 2.4978 22 7 1.8255 -0.7692 3.6855 23 6 1.4339 -0.3077 4.9139 24 1 0.9968 0.6754 5.0073 25 6 1.6045 -1.1013 6.0401 26 7 1.2331 -0.6557 7.2215 27 14 2.3612 -2.8015 5.8786 28 1 3.8352 -2.7037 6.0294 29 1 1.8134 -3.6894 6.9354 30 1 2.0364 -3.3632 4.5428 31 1 -0.3634 0.5129 0.8906 32 1 -0.3633 0.5149 -0.8894 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6978 -1.7573 -1.2351 35 1 1.6589 -0.2246 -2.1388 36 1 3.9345 -1.1888 -2.1663 37 1 3.9161 0.3398 -1.2534 38 1 3.8386 -2.4809 -0.0859 39 1 5.1904 -1.3251 0.0135 40 1 5.8368 -2.4475 1.3007 41 1 8.2912 -2.4453 1.1072 42 1 9.6006 1.5573 3.3184 43 1 6.9988 3.1669 2.6290 44 1 8.4509 3.8041 3.5711 45 1 9.9445 3.3613 1.5686 46 1 8.4931 2.7237 0.6262 47 1 6.0782 1.5788 2.7784 48 1 0.6084 0.3792 2.4211 49 1 2.2857 0.9530 2.5804 50 1 2.2184 -1.6521 3.6017 51 1 1.3520 -1.2103 8.0084 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496481357.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:41 Heat of formation + Delta-G solvation = 60.717633 kcal Electronic energy + Delta-G solvation = -31613.592888 eV Core-core repulsion = 27707.835074 eV Total energy + Delta-G solvation = -3905.757814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.19232 -40.99288 -38.64350 -37.97295 -36.66628 -35.09069 -33.86766 -33.36797 -32.38801 -31.96628 -28.91217 -27.26678 -26.34210 -25.59664 -24.88787 -23.85138 -23.20751 -22.40917 -22.39693 -21.19322 -20.43282 -19.60594 -18.17143 -17.81993 -17.26151 -16.89555 -16.76229 -16.55782 -16.06557 -15.92853 -15.86153 -15.58238 -15.28724 -14.87329 -14.82333 -14.73999 -14.53654 -14.13869 -13.96256 -13.90949 -13.54947 -13.35435 -13.15084 -12.96978 -12.89134 -12.73286 -12.53528 -12.31409 -12.17717 -11.96449 -11.86836 -11.79006 -11.69784 -11.55799 -11.41525 -11.20025 -11.01089 -10.95412 -10.74138 -10.02878 -9.90427 -9.62173 -9.00666 -7.98585 -5.22005 -0.22531 -0.01874 1.24339 1.32389 1.37705 1.71805 1.90035 2.47959 2.55673 2.84434 3.13157 3.31141 3.34096 3.57058 3.71289 3.74056 3.81410 3.88041 3.90327 3.97627 4.04180 4.12042 4.13132 4.17523 4.22599 4.26323 4.41937 4.48853 4.57675 4.65327 4.72126 4.73574 4.76320 4.78866 4.82939 4.90876 4.92997 4.97202 5.02568 5.09018 5.13167 5.18893 5.20154 5.22567 5.26032 5.40474 5.49144 5.53791 5.69863 5.76716 6.24736 6.39369 6.86266 7.13001 7.23858 7.92466 8.11109 9.25084 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008079 B = 0.004802 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.787201 B = 5829.230743 C = 7674.385785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.063 0.937 4 C -0.108 4.108 5 C -0.128 4.128 6 C 0.087 3.913 7 N -0.601 5.601 8 C 0.516 3.484 9 O -0.504 6.504 10 C -0.080 4.080 11 C -0.152 4.152 12 C 0.107 3.893 13 N -0.485 5.485 14 C 0.155 3.845 15 C -0.126 4.126 16 C -0.176 4.176 17 C -0.142 4.142 18 C -0.141 4.141 19 C 0.149 3.851 20 H 0.073 0.927 21 C 0.164 3.836 22 N -0.724 5.724 23 C -0.196 4.196 24 H 0.047 0.953 25 C -0.073 4.073 26 N -0.993 5.993 27 Si 0.954 3.046 28 H -0.296 1.296 29 H -0.292 1.292 30 H -0.255 1.255 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.166 0.834 41 H 0.201 0.799 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.092 0.908 47 H 0.128 0.872 48 H 0.028 0.972 49 H 0.021 0.979 50 H 0.356 0.644 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.516 -0.842 -25.751 29.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.082 0.918 4 C -0.145 4.145 5 C -0.166 4.166 6 C -0.034 4.034 7 N -0.336 5.336 8 C 0.302 3.698 9 O -0.378 6.378 10 C -0.091 4.091 11 C -0.172 4.172 12 C -0.049 4.049 13 N -0.194 5.194 14 C 0.018 3.982 15 C -0.145 4.145 16 C -0.214 4.214 17 C -0.179 4.179 18 C -0.162 4.162 19 C 0.046 3.954 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.367 5.367 23 C -0.328 4.328 24 H 0.065 0.935 25 C -0.263 4.263 26 N -0.646 5.646 27 Si 0.783 3.217 28 H -0.223 1.223 29 H -0.218 1.218 30 H -0.180 1.180 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.119 0.881 40 H 0.183 0.817 41 H 0.218 0.782 42 H 0.146 0.854 43 H 0.106 0.894 44 H 0.135 0.865 45 H 0.141 0.859 46 H 0.110 0.890 47 H 0.146 0.854 48 H 0.046 0.954 49 H 0.039 0.961 50 H 0.189 0.811 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.024 -0.485 -25.167 28.815 hybrid contribution -0.783 -0.649 1.242 1.605 sum 13.241 -1.134 -23.925 27.368 Atomic orbital electron populations 1.21845 0.93619 1.02618 1.02220 1.21419 0.96645 0.99329 0.93681 0.91831 1.21577 0.95237 1.01238 0.96448 1.21912 0.95993 1.00955 0.97771 1.22432 0.99654 0.98083 0.83253 1.48012 1.05935 1.61088 1.18547 1.18870 0.86779 0.80272 0.83890 1.91272 1.72975 1.44041 1.29513 1.20522 0.93560 0.96226 0.98834 1.22645 0.96922 0.98179 0.99429 1.23340 0.90365 0.96680 0.94554 1.67345 1.41585 1.00057 1.10460 1.20498 0.89898 0.93609 0.94164 1.20857 1.01661 0.86559 1.05407 1.23184 0.99081 0.97115 1.01995 1.23046 1.02252 0.99154 0.93462 1.22015 0.94702 0.99384 1.00113 1.21521 0.79117 0.99410 0.95323 0.90869 1.20973 0.96544 0.94028 0.84651 1.42451 1.74300 1.16489 1.03460 1.18955 1.29203 0.99252 0.85347 0.93513 1.25314 1.03633 1.02527 0.94805 1.69879 1.57140 1.38998 0.98601 0.85397 0.77560 0.81155 0.77544 1.22329 1.21811 1.18025 0.93841 0.90302 0.91903 0.90696 0.89666 0.87688 0.92544 0.89324 0.88116 0.81662 0.78205 0.85428 0.89436 0.86451 0.85912 0.88959 0.85421 0.95421 0.96140 0.81144 0.93806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.99 71.98 0.65 -2.40 16 2 C -0.09 -2.01 2.34 -10.72 -0.03 -2.04 16 3 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 4 C -0.11 -1.56 5.17 30.62 0.16 -1.40 16 5 C -0.13 -1.72 6.08 30.67 0.19 -1.53 16 6 C 0.09 1.49 5.28 86.36 0.46 1.95 16 7 N -0.60 -16.88 2.97 -798.07 -2.37 -19.25 16 8 C 0.52 18.47 7.03 86.88 0.61 19.08 16 9 O -0.50 -24.28 10.93 -3.75 -0.04 -24.32 16 10 C -0.08 -2.38 5.16 -19.88 -0.10 -2.49 16 11 C -0.15 -3.29 7.45 22.63 0.17 -3.12 16 12 C 0.11 2.09 11.17 84.67 0.95 3.04 16 13 N -0.48 -11.87 10.25 -184.04 -1.89 -13.76 16 14 C 0.16 4.06 6.46 42.55 0.27 4.33 16 15 C -0.13 -2.70 6.21 -11.54 -0.07 -2.77 16 16 C -0.18 -3.39 9.80 30.62 0.30 -3.09 16 17 C -0.14 -2.33 10.24 30.62 0.31 -2.01 16 18 C -0.14 -4.24 9.07 22.63 0.21 -4.03 16 19 C 0.15 4.54 2.36 44.97 0.11 4.64 16 20 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 21 C 0.16 7.01 4.86 86.38 0.42 7.43 16 22 N -0.72 -37.91 3.10 -343.44 -1.07 -38.98 16 23 C -0.20 -12.41 10.28 84.03 0.86 -11.54 16 24 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 25 C -0.07 -4.74 5.50 84.86 0.47 -4.27 16 26 N -0.99 -68.95 13.97 21.65 0.30 -68.65 16 27 Si 0.95 51.00 27.73 68.60 1.90 52.91 16 28 H -0.30 -16.05 7.11 99.48 0.71 -15.34 16 29 H -0.29 -15.31 7.11 99.48 0.71 -14.60 16 30 H -0.26 -12.28 6.52 99.48 0.65 -11.63 16 31 H 0.04 1.12 6.34 -2.38 -0.02 1.10 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.10 1.57 4.33 -2.39 -0.01 1.56 16 40 H 0.17 2.69 6.76 -2.91 -0.02 2.67 16 41 H 0.20 2.17 8.06 -2.91 -0.02 2.15 16 42 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.09 1.92 6.38 -2.39 -0.02 1.90 16 44 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 45 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.13 4.10 6.25 -2.91 -0.02 4.08 16 48 H 0.03 1.20 6.09 -2.39 -0.01 1.18 16 49 H 0.02 1.00 6.14 -2.39 -0.01 0.99 16 50 H 0.36 18.25 5.28 -92.71 -0.49 17.76 16 51 H 0.25 16.75 8.31 -92.71 -0.77 15.98 16 Total: -1.00 -86.02 390.97 3.16 -82.86 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.40 Total: 29.42 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 5.92 Total: -0.24 kcal Atomic # 7 Polarization: -135.61 SS G_CDS: -5.02 Total: -140.63 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.04 Total: -24.32 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 1.90 Total: 52.91 kcal Total: -86.02 3.16 -82.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496481357.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.577 kcal (2) G-P(sol) polarization free energy of solvation -86.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds