Wall clock time and date at job start Wed Apr 1 2020 02:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47411 * 2 1 4 4 H 1.09005 * 109.52208 * 55.07965 * 3 2 1 5 5 C 1.53197 * 109.49601 * 294.99987 * 3 2 1 6 6 N 1.46922 * 108.77397 * 185.41225 * 5 3 2 7 7 C 1.34777 * 120.62930 * 233.58776 * 6 5 3 8 8 O 1.21281 * 120.00083 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.00101 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47238 * 69.99430 * 9 7 6 11 11 C 1.52992 * 109.47161 * 189.99966 * 9 7 6 12 12 F 1.39900 * 109.46715 * 309.99745 * 9 7 6 13 13 C 1.46922 * 118.74271 * 53.85931 * 6 5 3 14 14 C 1.53625 * 108.54460 * 306.09645 * 13 6 5 15 15 C 1.53033 * 109.49996 * 175.16101 * 3 2 1 16 16 H 1.09003 * 109.46472 * 61.30969 * 15 3 2 17 17 N 1.46905 * 109.46352 * 301.33742 * 15 3 2 18 18 C 1.46896 * 111.00464 * 154.99814 * 17 15 3 19 19 C 1.50695 * 109.47371 * 179.97438 * 18 17 15 20 20 O 1.21300 * 119.99958 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00166 * 180.02562 * 19 18 17 22 22 C 1.37094 * 119.99954 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99904 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99962 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99645 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00026 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46789 * 90.00204 * 26 24 22 28 28 H 1.48491 * 109.47114 * 209.99806 * 26 24 22 29 29 H 1.48499 * 109.47012 * 330.00262 * 26 24 22 30 30 H 1.08999 * 109.47276 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47444 * 299.99924 * 1 2 3 32 32 H 1.09000 * 109.47286 * 60.00206 * 1 2 3 33 33 H 1.09004 * 109.47156 * 239.99635 * 2 1 3 34 34 H 1.09003 * 109.46995 * 120.00227 * 2 1 3 35 35 H 1.09000 * 109.58459 * 65.62790 * 5 3 2 36 36 H 1.08998 * 109.58327 * 305.19869 * 5 3 2 37 37 H 1.09002 * 109.47153 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.46832 * 60.00314 * 10 9 7 39 39 H 1.09004 * 109.47261 * 300.00295 * 10 9 7 40 40 H 1.09001 * 109.47066 * 299.99783 * 11 9 7 41 41 H 1.08996 * 109.47747 * 59.99449 * 11 9 7 42 42 H 1.09002 * 109.47103 * 179.97438 * 11 9 7 43 43 H 1.09004 * 109.58868 * 65.92383 * 13 6 5 44 44 H 1.08999 * 109.59497 * 186.35184 * 13 6 5 45 45 H 1.08997 * 109.63332 * 294.86454 * 14 13 6 46 46 H 1.09002 * 109.46221 * 174.73658 * 14 13 6 47 47 H 1.00903 * 110.99622 * 278.95462 * 17 15 3 48 48 H 1.09002 * 109.47009 * 300.00857 * 18 17 15 49 49 H 1.09006 * 109.46625 * 59.99966 * 18 17 15 50 50 H 0.97004 * 119.99600 * 359.97438 * 21 19 18 51 51 H 0.97005 * 119.99911 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6070 1.9819 0.8424 5 6 1.6351 2.1279 -1.3088 6 7 2.2416 3.4655 -1.3494 7 6 1.4817 4.5578 -1.5638 8 8 0.2853 4.4420 -1.7259 9 6 2.1187 5.9231 -1.6031 10 6 2.9684 6.0531 -2.8688 11 6 1.0272 6.9951 -1.6091 12 9 2.9312 6.0911 -0.4767 13 6 3.6930 3.5893 -1.1578 14 6 4.0741 2.8879 0.1548 15 6 3.5655 1.4448 0.1217 16 1 3.9989 0.9269 -0.7339 17 7 3.9589 0.7588 1.3597 18 6 5.3199 0.2168 1.2517 19 6 5.6877 -0.4775 2.5376 20 8 4.8939 -0.5173 3.4539 21 7 6.8987 -1.0542 2.6697 22 6 7.2330 -1.6862 3.8394 23 1 6.5262 -1.7216 4.6552 24 6 8.4817 -2.2803 3.9757 25 7 9.3419 -2.2367 2.9832 26 14 8.9376 -3.1409 5.5698 27 1 8.5416 -4.5700 5.4915 28 1 10.4041 -3.0445 5.7824 29 1 8.2294 -2.4923 6.7025 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.5497 2.2174 -1.3538 36 1 1.9908 1.5396 -2.1546 37 1 3.4294 7.0404 -2.8971 38 1 2.3353 5.9221 -3.7464 39 1 3.7460 5.2893 -2.8645 40 1 0.3941 6.8642 -2.4867 41 1 0.4219 6.9025 -0.7075 42 1 1.4880 7.9826 -1.6372 43 1 4.2132 3.1177 -1.9916 44 1 3.9659 4.6431 -1.1032 45 1 3.6219 3.4137 0.9957 46 1 5.1585 2.8891 0.2656 47 1 3.8766 1.3736 2.1556 48 1 5.3628 -0.4961 0.4282 49 1 6.0211 1.0302 1.0649 50 1 7.5333 -1.0226 1.9368 51 1 10.2138 -2.6511 3.0785 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498875614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:18 Heat of formation + Delta-G solvation = -127.048739 kcal Electronic energy + Delta-G solvation = -31426.598997 eV Core-core repulsion = 27081.929798 eV Total energy + Delta-G solvation = -4344.669200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.45482 -40.58607 -38.79629 -37.92742 -35.27303 -34.56795 -33.92896 -33.78503 -31.31310 -30.91947 -29.48633 -27.93152 -27.03411 -25.35955 -24.28638 -23.79320 -22.58721 -21.41451 -20.36617 -19.68242 -19.11776 -17.97081 -17.84007 -16.86042 -16.36178 -16.11189 -15.64438 -15.43514 -15.21463 -14.81484 -14.70566 -14.56291 -14.13388 -13.87445 -13.78278 -13.65797 -13.61899 -13.36902 -13.07609 -12.90546 -12.84238 -12.59876 -12.56182 -12.52351 -12.22087 -12.07453 -11.99142 -11.67452 -11.58641 -11.49469 -11.31414 -11.12648 -11.03832 -10.71972 -10.56122 -10.40242 -10.37447 -10.22026 -9.97218 -9.51420 -8.98832 -8.45618 -8.02212 -7.95478 -6.42503 -3.83145 2.08629 2.52810 3.17440 3.26102 3.31971 3.71812 3.90318 3.95381 4.05935 4.15318 4.26253 4.32275 4.46416 4.71115 4.76899 4.90365 4.98076 5.00192 5.05385 5.12992 5.17673 5.20506 5.24252 5.26664 5.36426 5.40334 5.46843 5.48869 5.51788 5.54205 5.59406 5.67731 5.74834 5.83040 5.87522 5.90260 6.00643 6.03200 6.15084 6.23667 6.26803 6.38993 6.61134 6.98378 7.22873 7.54633 7.65062 7.67848 8.05853 8.60693 9.17468 9.53807 10.05340 10.75263 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.017584 B = 0.002281 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.980341 B =12274.096431 C =13261.826946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.085 4.085 4 H 0.074 0.926 5 C 0.112 3.888 6 N -0.598 5.598 7 C 0.502 3.498 8 O -0.528 6.528 9 C 0.102 3.898 10 C -0.178 4.178 11 C -0.157 4.157 12 F -0.190 7.190 13 C 0.092 3.908 14 C -0.165 4.165 15 C 0.092 3.908 16 H 0.078 0.922 17 N -0.658 5.658 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.103 0.897 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.350 0.650 48 H 0.085 0.915 49 H 0.042 0.958 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.526 15.824 -15.553 25.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.105 4.105 4 H 0.093 0.907 5 C -0.010 4.010 6 N -0.330 5.330 7 C 0.287 3.713 8 O -0.404 6.404 9 C 0.080 3.920 10 C -0.235 4.235 11 C -0.215 4.215 12 F -0.171 7.171 13 C -0.031 4.031 14 C -0.205 4.205 15 C -0.019 4.019 16 H 0.096 0.904 17 N -0.289 5.289 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.121 0.879 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.170 0.830 48 H 0.103 0.897 49 H 0.060 0.940 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.774 15.038 -15.148 24.875 hybrid contribution 1.553 0.338 0.460 1.655 sum -11.220 15.376 -14.689 24.043 Atomic orbital electron populations 1.21842 0.96519 1.01406 1.01380 1.21429 0.94728 0.95033 1.03651 1.21475 0.95017 0.97117 0.96915 0.90738 1.21892 1.00032 0.81166 0.97885 1.48144 1.08475 1.06769 1.69592 1.20790 0.87166 0.86141 0.77193 1.90716 1.14215 1.86125 1.49328 1.21187 0.91438 0.94413 0.84928 1.22520 1.00554 1.04727 0.95709 1.22163 0.97465 0.96784 1.05083 1.92855 1.74169 1.96226 1.53804 1.22279 0.79474 1.03443 0.97950 1.22769 1.02045 0.97863 0.97841 1.21624 0.94984 0.91316 0.94000 0.90353 1.60161 1.24358 1.40394 1.03999 1.21700 0.89507 0.98591 0.98367 1.19823 0.83472 0.84867 0.89220 1.90531 1.50388 1.63776 1.41978 1.41867 1.13311 1.48714 1.16213 1.19696 0.99661 1.30167 0.93278 0.87952 1.25259 0.95680 0.98039 0.98988 1.69612 1.07796 1.45230 1.31746 0.85862 0.77464 0.79497 0.81501 1.20387 1.20948 1.19431 0.92862 0.92862 0.93238 0.92517 0.89092 0.88554 0.91196 0.89822 0.89896 0.90403 0.89705 0.90740 0.90591 0.91022 0.87949 0.90885 0.90328 0.83020 0.89687 0.93958 0.77502 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.67 37.16 0.36 -1.26 16 2 C -0.11 -1.27 5.31 -26.73 -0.14 -1.42 16 3 C -0.09 -0.95 2.06 -90.50 -0.19 -1.14 16 4 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 5 C 0.11 1.15 5.32 -3.71 -0.02 1.13 16 6 N -0.60 -6.02 2.97 -172.50 -0.51 -6.53 16 7 C 0.50 5.54 6.77 -10.98 -0.07 5.47 16 8 O -0.53 -7.31 15.39 5.56 0.09 -7.22 16 9 C 0.10 0.87 1.20 -91.77 -0.11 0.76 16 10 C -0.18 -1.02 8.60 37.16 0.32 -0.70 16 11 C -0.16 -1.17 8.28 37.15 0.31 -0.87 16 12 F -0.19 -1.87 14.35 2.25 0.03 -1.83 16 13 C 0.09 0.78 4.91 -3.49 -0.02 0.77 16 14 C -0.17 -1.68 5.35 -26.38 -0.14 -1.82 16 15 C 0.09 1.05 1.89 -67.67 -0.13 0.92 16 16 H 0.08 0.87 7.80 -51.93 -0.40 0.46 16 17 N -0.66 -9.95 4.97 -107.95 -0.54 -10.49 16 18 C 0.05 0.85 5.96 -4.98 -0.03 0.82 16 19 C 0.44 10.18 7.82 -10.99 -0.09 10.09 16 20 O -0.58 -15.62 15.78 5.54 0.09 -15.53 16 21 N -0.56 -14.12 5.29 -10.96 -0.06 -14.17 16 22 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 26 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.48 6.70 -51.93 -0.35 0.13 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.30 7.42 -51.93 -0.39 0.92 16 35 H 0.10 1.10 5.72 -51.93 -0.30 0.80 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.42 5.97 -51.93 -0.31 0.11 16 40 H 0.08 0.61 7.99 -51.93 -0.41 0.19 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.82 3.85 -51.93 -0.20 0.62 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.08 0.78 7.42 -51.93 -0.39 0.40 16 47 H 0.35 5.69 8.18 -39.29 -0.32 5.37 16 48 H 0.08 1.32 8.05 -51.93 -0.42 0.90 16 49 H 0.04 0.63 7.41 -51.93 -0.38 0.25 16 50 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 51 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 400.43 15.07 6.03 6.03 Total: -1.00 -32.05 400.43 -7.71 -39.76 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -8.35 Total: 12.86 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -0.19 Total: 4.82 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.38 Total: -54.86 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.17 Total: -22.76 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.03 Total: -1.83 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.05 -7.71 -39.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498875614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.287 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds