Wall clock time and date at job start Wed Apr 1 2020 02:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47411 * 2 1 4 4 H 1.09005 * 109.52208 * 55.07965 * 3 2 1 5 5 C 1.53197 * 109.49601 * 294.99987 * 3 2 1 6 6 N 1.46922 * 108.77397 * 185.41225 * 5 3 2 7 7 C 1.34777 * 120.62930 * 233.58776 * 6 5 3 8 8 O 1.21281 * 120.00083 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.00101 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47238 * 69.99430 * 9 7 6 11 11 C 1.52992 * 109.47161 * 189.99966 * 9 7 6 12 12 F 1.39900 * 109.46715 * 309.99745 * 9 7 6 13 13 C 1.46922 * 118.74271 * 53.85931 * 6 5 3 14 14 C 1.53625 * 108.54460 * 306.09645 * 13 6 5 15 15 C 1.53033 * 109.49996 * 175.16101 * 3 2 1 16 16 H 1.09003 * 109.46472 * 61.30969 * 15 3 2 17 17 N 1.46905 * 109.46352 * 301.33742 * 15 3 2 18 18 C 1.46896 * 111.00464 * 154.99814 * 17 15 3 19 19 C 1.50695 * 109.47371 * 179.97438 * 18 17 15 20 20 O 1.21300 * 119.99958 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00166 * 180.02562 * 19 18 17 22 22 C 1.37094 * 119.99954 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99904 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99962 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99645 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00026 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46789 * 90.00204 * 26 24 22 28 28 H 1.48491 * 109.47114 * 209.99806 * 26 24 22 29 29 H 1.48499 * 109.47012 * 330.00262 * 26 24 22 30 30 H 1.08999 * 109.47276 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47444 * 299.99924 * 1 2 3 32 32 H 1.09000 * 109.47286 * 60.00206 * 1 2 3 33 33 H 1.09004 * 109.47156 * 239.99635 * 2 1 3 34 34 H 1.09003 * 109.46995 * 120.00227 * 2 1 3 35 35 H 1.09000 * 109.58459 * 65.62790 * 5 3 2 36 36 H 1.08998 * 109.58327 * 305.19869 * 5 3 2 37 37 H 1.09002 * 109.47153 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.46832 * 60.00314 * 10 9 7 39 39 H 1.09004 * 109.47261 * 300.00295 * 10 9 7 40 40 H 1.09001 * 109.47066 * 299.99783 * 11 9 7 41 41 H 1.08996 * 109.47747 * 59.99449 * 11 9 7 42 42 H 1.09002 * 109.47103 * 179.97438 * 11 9 7 43 43 H 1.09004 * 109.58868 * 65.92383 * 13 6 5 44 44 H 1.08999 * 109.59497 * 186.35184 * 13 6 5 45 45 H 1.08997 * 109.63332 * 294.86454 * 14 13 6 46 46 H 1.09002 * 109.46221 * 174.73658 * 14 13 6 47 47 H 1.00903 * 110.99622 * 278.95462 * 17 15 3 48 48 H 1.09002 * 109.47009 * 300.00857 * 18 17 15 49 49 H 1.09006 * 109.46625 * 59.99966 * 18 17 15 50 50 H 0.97004 * 119.99600 * 359.97438 * 21 19 18 51 51 H 0.97005 * 119.99911 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6070 1.9819 0.8424 5 6 1.6351 2.1279 -1.3088 6 7 2.2416 3.4655 -1.3494 7 6 1.4817 4.5578 -1.5638 8 8 0.2853 4.4420 -1.7259 9 6 2.1187 5.9231 -1.6031 10 6 2.9684 6.0531 -2.8688 11 6 1.0272 6.9951 -1.6091 12 9 2.9312 6.0911 -0.4767 13 6 3.6930 3.5893 -1.1578 14 6 4.0741 2.8879 0.1548 15 6 3.5655 1.4448 0.1217 16 1 3.9989 0.9269 -0.7339 17 7 3.9589 0.7588 1.3597 18 6 5.3199 0.2168 1.2517 19 6 5.6877 -0.4775 2.5376 20 8 4.8939 -0.5173 3.4539 21 7 6.8987 -1.0542 2.6697 22 6 7.2330 -1.6862 3.8394 23 1 6.5262 -1.7216 4.6552 24 6 8.4817 -2.2803 3.9757 25 7 9.3419 -2.2367 2.9832 26 14 8.9376 -3.1409 5.5698 27 1 8.5416 -4.5700 5.4915 28 1 10.4041 -3.0445 5.7824 29 1 8.2294 -2.4923 6.7025 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.5497 2.2174 -1.3538 36 1 1.9908 1.5396 -2.1546 37 1 3.4294 7.0404 -2.8971 38 1 2.3353 5.9221 -3.7464 39 1 3.7460 5.2893 -2.8645 40 1 0.3941 6.8642 -2.4867 41 1 0.4219 6.9025 -0.7075 42 1 1.4880 7.9826 -1.6372 43 1 4.2132 3.1177 -1.9916 44 1 3.9659 4.6431 -1.1032 45 1 3.6219 3.4137 0.9957 46 1 5.1585 2.8891 0.2656 47 1 3.8766 1.3736 2.1556 48 1 5.3628 -0.4961 0.4282 49 1 6.0211 1.0302 1.0649 50 1 7.5333 -1.0226 1.9368 51 1 10.2138 -2.6511 3.0785 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498875614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:16 Heat of formation + Delta-G solvation = -148.754631 kcal Electronic energy + Delta-G solvation = -31427.540236 eV Core-core repulsion = 27081.929798 eV Total energy + Delta-G solvation = -4345.610438 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -49.16202 -41.44619 -40.21126 -39.30065 -36.40179 -35.85633 -35.38739 -34.55582 -33.26334 -32.02240 -30.35181 -28.55064 -28.30233 -26.68330 -25.50102 -24.84817 -23.43657 -22.32095 -21.43174 -20.90537 -20.35253 -19.86128 -18.72574 -17.79573 -17.58935 -17.07646 -16.77025 -16.47597 -16.37162 -16.15786 -15.93077 -15.64618 -15.41418 -15.29251 -15.01954 -14.58872 -14.49208 -14.30517 -14.12408 -13.68710 -13.63591 -13.56729 -13.41268 -13.34642 -13.29355 -13.10516 -13.09475 -12.90935 -12.84222 -12.69131 -12.49850 -12.41192 -12.12549 -12.10248 -11.86155 -11.65074 -11.51375 -11.48042 -11.31212 -10.79542 -10.32085 -10.00239 -9.82272 -9.20450 -8.46171 -5.94368 1.26277 1.37951 1.41834 1.54164 1.76672 2.07435 2.29416 2.90844 3.01403 3.21509 3.39531 3.50473 3.54458 3.62295 3.71941 3.87288 3.95070 4.02901 4.21577 4.32027 4.33609 4.42553 4.44526 4.51202 4.57221 4.59164 4.61495 4.62535 4.66311 4.68107 4.72039 4.76147 4.90017 4.97251 4.99223 5.03636 5.06966 5.12036 5.17727 5.26904 5.38793 5.41502 5.43772 5.62576 5.92875 6.15082 6.18639 6.39470 6.61704 6.85939 7.14065 7.58199 8.14040 8.71174 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.017584 B = 0.002281 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.980341 B =12274.096431 C =13261.826946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.106 4.106 3 C -0.077 4.077 4 H 0.052 0.948 5 C 0.117 3.883 6 N -0.597 5.597 7 C 0.494 3.506 8 O -0.563 6.563 9 C 0.100 3.900 10 C -0.173 4.173 11 C -0.157 4.157 12 F -0.198 7.198 13 C 0.094 3.906 14 C -0.160 4.160 15 C 0.095 3.905 16 H 0.094 0.906 17 N -0.671 5.671 18 C 0.068 3.932 19 C 0.438 3.562 20 O -0.625 6.625 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.076 0.924 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.055 0.945 46 H 0.087 0.913 47 H 0.341 0.659 48 H 0.105 0.895 49 H 0.069 0.931 50 H 0.397 0.603 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.367 16.512 -17.507 26.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.144 4.144 3 C -0.097 4.097 4 H 0.070 0.930 5 C -0.006 4.006 6 N -0.328 5.328 7 C 0.281 3.719 8 O -0.442 6.442 9 C 0.079 3.921 10 C -0.231 4.231 11 C -0.214 4.214 12 F -0.179 7.179 13 C -0.029 4.029 14 C -0.200 4.200 15 C -0.014 4.014 16 H 0.113 0.887 17 N -0.301 5.301 18 C -0.065 4.065 19 C 0.225 3.775 20 O -0.511 6.511 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.094 0.906 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.129 0.871 45 H 0.074 0.926 46 H 0.105 0.895 47 H 0.159 0.841 48 H 0.123 0.877 49 H 0.087 0.913 50 H 0.231 0.769 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.587 15.732 -17.136 25.989 hybrid contribution 1.127 0.134 1.078 1.566 sum -10.460 15.866 -16.058 24.880 Atomic orbital electron populations 1.21805 0.95878 1.01726 1.01383 1.21343 0.95313 0.95021 1.02696 1.21366 0.94829 0.96715 0.96830 0.92980 1.21815 0.99474 0.81569 0.97703 1.48245 1.09163 1.06511 1.68917 1.21332 0.86869 0.87247 0.76477 1.90695 1.15731 1.86763 1.51021 1.21331 0.92021 0.92925 0.85858 1.22542 1.00323 1.06078 0.94114 1.22186 0.97253 0.97707 1.04299 1.92840 1.74358 1.96141 1.54572 1.22411 0.78543 1.04133 0.97786 1.22689 1.02310 0.96700 0.98293 1.21677 0.94994 0.92098 0.92666 0.88743 1.60143 1.23481 1.41268 1.05238 1.21552 0.90869 0.99210 0.94821 1.20958 0.82160 0.83550 0.90802 1.90503 1.51415 1.64993 1.44226 1.41928 1.14226 1.49237 1.15717 1.19629 1.00130 1.32400 0.94050 0.90553 1.25999 0.95097 0.98072 1.02042 1.69665 1.08084 1.45325 1.32975 0.84965 0.77635 0.78413 0.77558 1.19717 1.19469 1.19921 0.92376 0.93928 0.92162 0.91221 0.92114 0.89822 0.89164 0.88016 0.89196 0.89746 0.89478 0.92538 0.88360 0.88425 0.87082 0.92576 0.89473 0.84086 0.87669 0.91337 0.76920 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.67 71.98 0.70 -2.45 16 2 C -0.11 -2.40 5.31 30.59 0.16 -2.23 16 3 C -0.08 -1.68 2.06 -10.72 -0.02 -1.71 16 4 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 5 C 0.12 2.22 5.32 86.36 0.46 2.68 16 6 N -0.60 -11.04 2.97 -818.06 -2.43 -13.47 16 7 C 0.49 10.43 6.77 87.66 0.59 11.02 16 8 O -0.56 -15.57 15.39 -3.03 -0.05 -15.62 16 9 C 0.10 1.54 1.20 -11.54 -0.01 1.52 16 10 C -0.17 -1.49 8.60 71.98 0.62 -0.87 16 11 C -0.16 -2.17 8.28 71.98 0.60 -1.57 16 12 F -0.20 -3.60 14.35 44.97 0.65 -2.95 16 13 C 0.09 1.35 4.91 86.51 0.42 1.77 16 14 C -0.16 -2.95 5.35 30.82 0.16 -2.78 16 15 C 0.10 2.03 1.89 44.94 0.08 2.12 16 16 H 0.09 1.77 7.80 -2.39 -0.02 1.75 16 17 N -0.67 -19.92 4.97 -495.43 -2.46 -22.38 16 18 C 0.07 2.17 5.96 85.56 0.51 2.68 16 19 C 0.44 20.38 7.82 87.66 0.69 21.07 16 20 O -0.62 -34.50 15.78 -3.09 -0.05 -34.55 16 21 N -0.57 -28.99 5.29 -306.98 -1.62 -30.61 16 22 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 23 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 24 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 25 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 26 Si 0.99 42.88 29.55 68.60 2.03 44.90 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 29 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.13 6.70 -2.39 -0.02 1.11 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.77 7.42 -2.39 -0.02 1.75 16 35 H 0.08 1.86 5.72 -2.39 -0.01 1.84 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 0.62 5.97 -2.38 -0.01 0.61 16 40 H 0.09 1.16 7.99 -2.39 -0.02 1.14 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.11 1.47 3.85 -2.39 -0.01 1.46 16 45 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.09 1.49 7.42 -2.39 -0.02 1.47 16 47 H 0.34 11.23 8.18 -89.69 -0.73 10.50 16 48 H 0.11 3.00 8.05 -2.39 -0.02 2.98 16 49 H 0.07 1.87 7.41 -2.38 -0.02 1.85 16 50 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 51 H 0.28 13.87 8.31 -92.70 -0.77 13.10 16 Total: -1.00 -71.21 400.43 2.08 -69.13 By element: Atomic # 1 Polarization: 41.81 SS G_CDS: -0.51 Total: 41.30 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 6.24 Total: 13.07 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -6.23 Total: -115.29 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -0.10 Total: -50.16 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.65 Total: -2.95 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -71.21 2.08 -69.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498875614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.623 kcal (2) G-P(sol) polarization free energy of solvation -71.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds