Wall clock time and date at job start Wed Apr 1 2020 01:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99927 * 2 1 4 4 C 1.53002 * 109.46608 * 270.00025 * 3 2 1 5 5 C 1.52999 * 109.47100 * 299.99538 * 4 3 2 6 6 C 1.52991 * 109.47554 * 60.00039 * 4 3 2 7 7 C 1.53001 * 109.46623 * 180.02562 * 4 3 2 8 8 N 1.46510 * 109.47120 * 179.97438 * 7 4 3 9 9 C 1.36935 * 120.00102 * 179.97438 * 8 7 4 10 10 H 1.08005 * 119.99794 * 0.02562 * 9 8 7 11 11 C 1.38806 * 119.99846 * 179.97438 * 9 8 7 12 12 N 1.31620 * 120.00023 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99904 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46794 * 60.00228 * 13 11 9 15 15 H 1.48506 * 109.46979 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47089 * 300.00160 * 13 11 9 17 17 C 1.34769 * 120.00341 * 179.97438 * 2 1 3 18 18 O 1.21670 * 120.00360 * 185.40274 * 17 2 1 19 19 C 1.46922 * 119.99838 * 5.41199 * 17 2 1 20 20 C 1.36366 * 126.77071 * 320.52951 * 19 17 2 21 21 N 1.35467 * 109.77200 * 179.97438 * 20 19 17 22 22 C 1.46501 * 124.78440 * 179.97438 * 21 20 19 23 23 C 1.37966 * 110.42634 * 0.23815 * 21 20 19 24 24 C 1.39114 * 133.18580 * 180.38784 * 23 21 20 25 25 C 1.37763 * 119.92965 * 179.61826 * 24 23 21 26 26 C 1.38753 * 120.63427 * 359.79222 * 25 24 23 27 27 C 1.37757 * 120.30061 * 359.96989 * 26 25 24 28 28 C 1.39277 * 119.66848 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47433 * 264.51912 * 1 2 3 30 30 H 1.08997 * 109.47443 * 24.52080 * 1 2 3 31 31 H 1.09003 * 109.47160 * 144.52362 * 1 2 3 32 32 H 1.09008 * 109.46982 * 29.99551 * 3 2 1 33 33 H 1.08989 * 109.47410 * 149.99677 * 3 2 1 34 34 H 1.09000 * 109.47018 * 60.00276 * 5 4 3 35 35 H 1.08997 * 109.46876 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.47263 * 300.00686 * 5 4 3 37 37 H 1.09008 * 109.47395 * 59.99642 * 6 4 3 38 38 H 1.09002 * 109.47674 * 179.97438 * 6 4 3 39 39 H 1.09000 * 109.47515 * 299.99899 * 6 4 3 40 40 H 1.09008 * 109.46880 * 299.99472 * 7 4 3 41 41 H 1.08993 * 109.47982 * 59.99650 * 7 4 3 42 42 H 0.96998 * 119.99431 * 359.97438 * 8 7 4 43 43 H 0.97002 * 119.99564 * 180.02562 * 12 11 9 44 44 H 1.08007 * 125.11196 * 359.96667 * 20 19 17 45 45 H 1.09004 * 109.47223 * 90.02470 * 22 21 20 46 46 H 1.09002 * 109.47262 * 330.02100 * 22 21 20 47 47 H 1.09000 * 109.46667 * 210.01766 * 22 21 20 48 48 H 1.08002 * 120.03678 * 359.36113 * 24 23 21 49 49 H 1.07997 * 119.68372 * 179.75781 * 25 24 23 50 50 H 1.07999 * 119.85042 * 179.97438 * 26 25 24 51 51 H 1.07996 * 120.16328 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.2794 0.6441 -2.1637 6 6 1.1156 1.8933 -2.1638 7 6 3.2180 3.0351 -1.4426 8 7 3.4627 3.4577 -2.8239 9 6 4.1359 4.6236 -3.0741 10 1 4.4869 5.2314 -2.2532 11 6 4.3682 5.0237 -4.3828 12 7 3.9409 4.2827 -5.3832 13 14 5.2872 6.6138 -4.7242 14 1 6.6442 6.5395 -4.1256 15 1 5.4041 6.8127 -6.1912 16 1 4.5445 7.7527 -4.1273 17 6 2.1389 -1.1671 0.0005 18 8 3.3515 -1.1694 0.0997 19 6 1.4092 -2.4367 -0.1189 20 6 0.2185 -2.7520 0.4661 21 7 -0.1405 -4.0128 0.1241 22 6 -1.3635 -4.6839 0.5713 23 6 0.8112 -4.5776 -0.6998 24 6 0.9172 -5.8176 -1.3214 25 6 2.0097 -6.0989 -2.1121 26 6 3.0084 -5.1542 -2.3001 27 6 2.9191 -3.9189 -1.6970 28 6 1.8200 -3.6211 -0.8951 29 1 -0.3634 -0.0982 1.0230 30 1 -0.3634 0.9349 -0.4265 31 1 -0.3634 -0.8369 -0.5964 32 1 1.6083 2.0285 0.5138 33 1 3.1498 1.1385 0.5138 34 1 2.7344 -0.2999 -2.1637 35 1 3.4613 0.9589 -3.1913 36 1 4.2318 0.5138 -1.6498 37 1 0.5264 2.6530 -1.6500 38 1 1.2972 2.2083 -3.1914 39 1 0.5706 0.9493 -2.1638 40 1 2.6291 3.7950 -0.9286 41 1 4.1703 2.9045 -0.9289 42 1 3.1478 2.9116 -3.5611 43 1 4.1036 4.5622 -6.2977 44 1 -0.3525 -2.0954 1.1059 45 1 -2.1669 -4.4859 -0.1384 46 1 -1.6460 -4.3072 1.5544 47 1 -1.1876 -5.7580 0.6304 48 1 0.1459 -6.5604 -1.1811 49 1 2.0899 -7.0642 -2.5896 50 1 3.8596 -5.3884 -2.9222 51 1 3.6975 -3.1851 -1.8452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505822161.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:57 Heat of formation + Delta-G solvation = 47.648321 kcal Electronic energy + Delta-G solvation = -30579.743417 eV Core-core repulsion = 26673.418875 eV Total energy + Delta-G solvation = -3906.324542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.77117 -39.74675 -37.31700 -37.10724 -34.97546 -33.38103 -32.76153 -30.50764 -30.21929 -29.28000 -27.81398 -27.36295 -26.42495 -25.74905 -25.08386 -23.01719 -22.73565 -21.78835 -21.19074 -19.19344 -18.27457 -17.45880 -17.14686 -16.92664 -16.12515 -15.90306 -15.71500 -15.44539 -15.30263 -14.48075 -14.15187 -14.13708 -13.92170 -13.68157 -13.55507 -13.34431 -13.16944 -13.08716 -12.91024 -12.67138 -12.57030 -12.38118 -12.21408 -11.96220 -11.78109 -11.52417 -11.14628 -11.12774 -11.00841 -10.90164 -10.73887 -10.61176 -10.19081 -10.17093 -9.94948 -9.78957 -9.61591 -9.54206 -8.77497 -8.46728 -8.41827 -7.85116 -6.80198 -5.67460 -2.94628 0.85115 1.40300 1.97953 2.38180 2.99234 3.34326 3.50008 3.54035 3.55278 3.79815 4.26374 4.34652 4.46778 4.65715 4.68267 4.70400 4.90448 4.95702 4.99738 5.07059 5.18056 5.22765 5.32451 5.37081 5.41303 5.50527 5.53424 5.53730 5.59910 5.66135 5.83010 5.89609 6.03663 6.08401 6.22133 6.24877 6.27117 6.38196 6.40263 6.49709 6.52208 6.56176 6.65095 6.74213 6.84333 6.87105 6.88964 6.96184 7.05006 7.09014 7.52474 7.78069 8.39539 8.52262 9.63075 10.23168 10.58077 11.55697 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017322 B = 0.002502 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.023581 B =11188.496537 C =12056.808312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.606 5.606 3 C 0.129 3.871 4 C -0.086 4.086 5 C -0.124 4.124 6 C -0.135 4.135 7 C 0.166 3.834 8 N -0.728 5.728 9 C -0.235 4.235 10 H 0.068 0.932 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.906 3.094 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.287 1.287 17 C 0.589 3.411 18 O -0.530 6.530 19 C -0.214 4.214 20 C 0.093 3.907 21 N -0.477 5.477 22 C 0.075 3.925 23 C 0.088 3.912 24 C -0.130 4.130 25 C -0.099 4.099 26 C -0.142 4.142 27 C -0.061 4.061 28 C -0.064 4.064 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.017 0.983 41 H 0.019 0.981 42 H 0.385 0.615 43 H 0.254 0.746 44 H 0.177 0.823 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.118 0.882 49 H 0.125 0.875 50 H 0.125 0.875 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.871 -22.365 13.596 30.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.339 5.339 3 C 0.006 3.994 4 C -0.087 4.087 5 C -0.182 4.182 6 C -0.192 4.192 7 C 0.037 3.963 8 N -0.373 5.373 9 C -0.366 4.366 10 H 0.086 0.914 11 C -0.211 4.211 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.214 1.214 15 H -0.218 1.218 16 H -0.214 1.214 17 C 0.378 3.622 18 O -0.406 6.406 19 C -0.225 4.225 20 C -0.037 4.037 21 N -0.159 5.159 22 C -0.066 4.066 23 C -0.016 4.016 24 C -0.150 4.150 25 C -0.118 4.118 26 C -0.161 4.161 27 C -0.079 4.079 28 C -0.069 4.069 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.037 0.963 42 H 0.220 0.780 43 H 0.064 0.936 44 H 0.194 0.806 45 H 0.092 0.908 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.136 0.864 49 H 0.143 0.857 50 H 0.143 0.857 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.439 -22.356 13.782 29.970 hybrid contribution 0.135 0.767 -0.465 0.907 sum -14.304 -21.589 13.317 29.121 Atomic orbital electron populations 1.22078 0.80417 1.04031 1.00763 1.47608 1.06504 1.06023 1.73782 1.21553 0.97483 0.83306 0.97065 1.21101 0.96382 0.96897 0.94320 1.21710 0.99203 0.96400 1.00840 1.21866 0.95827 0.99795 1.01731 1.20583 0.95685 0.91205 0.88795 1.42388 1.68109 1.25746 1.01029 1.19200 1.27574 0.98169 0.91689 0.91353 1.24711 1.01878 0.98955 0.95599 1.69653 1.51725 1.38941 0.98106 0.86275 0.79750 0.83455 0.76759 1.21352 1.21789 1.21399 1.17204 0.86639 0.82265 0.76064 1.90807 1.13514 1.87043 1.49243 1.20044 0.97746 0.95746 1.08994 1.22185 0.95517 0.85860 1.00122 1.43555 1.18876 1.12317 1.41144 1.22028 0.84848 0.98711 1.01039 1.18226 0.90450 0.95522 0.97434 1.19948 1.00192 0.93959 1.00914 1.20812 0.93488 0.99381 0.98159 1.20978 0.99747 0.93660 1.01720 1.20676 0.96160 0.96753 0.94354 1.18726 0.95577 0.92224 1.00347 0.93193 0.90115 0.91080 0.90696 0.89628 0.94249 0.92155 0.92606 0.93349 0.91555 0.93596 0.96544 0.96277 0.77997 0.93586 0.80562 0.90812 0.89657 0.89880 0.86406 0.85686 0.85670 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 7.79 59.85 0.47 1.09 16 2 N -0.61 -7.81 2.40 -183.03 -0.44 -8.25 16 3 C 0.13 1.86 4.59 -4.04 -0.02 1.84 16 4 C -0.09 -1.49 0.60 -154.51 -0.09 -1.58 16 5 C -0.12 -2.38 7.06 37.16 0.26 -2.12 16 6 C -0.13 -2.21 7.07 37.15 0.26 -1.95 16 7 C 0.17 3.49 5.15 -4.04 -0.02 3.47 16 8 N -0.73 -18.97 5.00 -59.90 -0.30 -19.27 16 9 C -0.23 -6.77 9.99 -15.06 -0.15 -6.92 16 10 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 11 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 12 N -0.94 -28.97 13.06 55.49 0.72 -28.24 16 13 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 15 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 C 0.59 8.89 5.82 -12.75 -0.07 8.81 16 18 O -0.53 -9.94 15.31 5.22 0.08 -9.86 16 19 C -0.21 -2.78 5.48 -103.31 -0.57 -3.35 16 20 C 0.09 0.85 9.02 -16.62 -0.15 0.70 16 21 N -0.48 -4.04 3.14 -121.60 -0.38 -4.42 16 22 C 0.08 0.29 10.99 59.85 0.66 0.95 16 23 C 0.09 0.96 6.79 -83.97 -0.57 0.39 16 24 C -0.13 -1.20 9.91 -39.43 -0.39 -1.59 16 25 C -0.10 -0.92 10.01 -39.56 -0.40 -1.32 16 26 C -0.14 -1.56 10.03 -39.57 -0.40 -1.95 16 27 C -0.06 -0.82 10.09 -39.37 -0.40 -1.22 16 28 C -0.06 -0.87 6.36 -104.95 -0.67 -1.54 16 29 H 0.05 0.31 7.35 -51.93 -0.38 -0.07 16 30 H 0.08 0.71 6.30 -51.93 -0.33 0.38 16 31 H 0.07 0.60 5.95 -51.93 -0.31 0.29 16 32 H 0.07 0.93 8.07 -51.92 -0.42 0.51 16 33 H 0.09 1.37 7.35 -51.94 -0.38 0.99 16 34 H 0.04 0.72 6.22 -51.93 -0.32 0.40 16 35 H 0.06 1.29 6.86 -51.93 -0.36 0.94 16 36 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 37 H 0.05 0.73 8.07 -51.92 -0.42 0.31 16 38 H 0.07 1.29 6.86 -51.93 -0.36 0.94 16 39 H 0.05 0.66 6.07 -51.93 -0.32 0.34 16 40 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.38 10.52 5.36 -40.82 -0.22 10.31 16 43 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.18 1.01 6.33 -52.48 -0.33 0.67 16 45 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 46 H 0.08 0.17 8.13 -51.93 -0.42 -0.25 16 47 H 0.08 0.25 8.03 -51.93 -0.42 -0.16 16 48 H 0.12 0.77 8.01 -52.49 -0.42 0.35 16 49 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 50 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 51 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 399.58 15.07 6.02 6.02 Total: -1.00 -36.16 399.58 -9.55 -45.71 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.89 Total: 7.17 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -2.34 Total: -6.85 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.40 Total: -60.18 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.16 -9.55 -45.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505822161.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.361 kcal (2) G-P(sol) polarization free energy of solvation -36.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds