Wall clock time and date at job start Wed Apr 1 2020 01:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99927 * 2 1 4 4 C 1.53002 * 109.46608 * 270.00025 * 3 2 1 5 5 C 1.52999 * 109.47100 * 299.99538 * 4 3 2 6 6 C 1.52991 * 109.47554 * 60.00039 * 4 3 2 7 7 C 1.53001 * 109.46623 * 180.02562 * 4 3 2 8 8 N 1.46510 * 109.47120 * 179.97438 * 7 4 3 9 9 C 1.36935 * 120.00102 * 179.97438 * 8 7 4 10 10 H 1.08005 * 119.99794 * 0.02562 * 9 8 7 11 11 C 1.38806 * 119.99846 * 179.97438 * 9 8 7 12 12 N 1.31620 * 120.00023 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99904 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46794 * 60.00228 * 13 11 9 15 15 H 1.48506 * 109.46979 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47089 * 300.00160 * 13 11 9 17 17 C 1.34769 * 120.00341 * 179.97438 * 2 1 3 18 18 O 1.21670 * 120.00360 * 185.40274 * 17 2 1 19 19 C 1.46922 * 119.99838 * 5.41199 * 17 2 1 20 20 C 1.36366 * 126.77071 * 320.52951 * 19 17 2 21 21 N 1.35467 * 109.77200 * 179.97438 * 20 19 17 22 22 C 1.46501 * 124.78440 * 179.97438 * 21 20 19 23 23 C 1.37966 * 110.42634 * 0.23815 * 21 20 19 24 24 C 1.39114 * 133.18580 * 180.38784 * 23 21 20 25 25 C 1.37763 * 119.92965 * 179.61826 * 24 23 21 26 26 C 1.38753 * 120.63427 * 359.79222 * 25 24 23 27 27 C 1.37757 * 120.30061 * 359.96989 * 26 25 24 28 28 C 1.39277 * 119.66848 * 0.02562 * 27 26 25 29 29 H 1.09002 * 109.47433 * 264.51912 * 1 2 3 30 30 H 1.08997 * 109.47443 * 24.52080 * 1 2 3 31 31 H 1.09003 * 109.47160 * 144.52362 * 1 2 3 32 32 H 1.09008 * 109.46982 * 29.99551 * 3 2 1 33 33 H 1.08989 * 109.47410 * 149.99677 * 3 2 1 34 34 H 1.09000 * 109.47018 * 60.00276 * 5 4 3 35 35 H 1.08997 * 109.46876 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.47263 * 300.00686 * 5 4 3 37 37 H 1.09008 * 109.47395 * 59.99642 * 6 4 3 38 38 H 1.09002 * 109.47674 * 179.97438 * 6 4 3 39 39 H 1.09000 * 109.47515 * 299.99899 * 6 4 3 40 40 H 1.09008 * 109.46880 * 299.99472 * 7 4 3 41 41 H 1.08993 * 109.47982 * 59.99650 * 7 4 3 42 42 H 0.96998 * 119.99431 * 359.97438 * 8 7 4 43 43 H 0.97002 * 119.99564 * 180.02562 * 12 11 9 44 44 H 1.08007 * 125.11196 * 359.96667 * 20 19 17 45 45 H 1.09004 * 109.47223 * 90.02470 * 22 21 20 46 46 H 1.09002 * 109.47262 * 330.02100 * 22 21 20 47 47 H 1.09000 * 109.46667 * 210.01766 * 22 21 20 48 48 H 1.08002 * 120.03678 * 359.36113 * 24 23 21 49 49 H 1.07997 * 119.68372 * 179.75781 * 25 24 23 50 50 H 1.07999 * 119.85042 * 179.97438 * 26 25 24 51 51 H 1.07996 * 120.16328 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.2794 0.6441 -2.1637 6 6 1.1156 1.8933 -2.1638 7 6 3.2180 3.0351 -1.4426 8 7 3.4627 3.4577 -2.8239 9 6 4.1359 4.6236 -3.0741 10 1 4.4869 5.2314 -2.2532 11 6 4.3682 5.0237 -4.3828 12 7 3.9409 4.2827 -5.3832 13 14 5.2872 6.6138 -4.7242 14 1 6.6442 6.5395 -4.1256 15 1 5.4041 6.8127 -6.1912 16 1 4.5445 7.7527 -4.1273 17 6 2.1389 -1.1671 0.0005 18 8 3.3515 -1.1694 0.0997 19 6 1.4092 -2.4367 -0.1189 20 6 0.2185 -2.7520 0.4661 21 7 -0.1405 -4.0128 0.1241 22 6 -1.3635 -4.6839 0.5713 23 6 0.8112 -4.5776 -0.6998 24 6 0.9172 -5.8176 -1.3214 25 6 2.0097 -6.0989 -2.1121 26 6 3.0084 -5.1542 -2.3001 27 6 2.9191 -3.9189 -1.6970 28 6 1.8200 -3.6211 -0.8951 29 1 -0.3634 -0.0982 1.0230 30 1 -0.3634 0.9349 -0.4265 31 1 -0.3634 -0.8369 -0.5964 32 1 1.6083 2.0285 0.5138 33 1 3.1498 1.1385 0.5138 34 1 2.7344 -0.2999 -2.1637 35 1 3.4613 0.9589 -3.1913 36 1 4.2318 0.5138 -1.6498 37 1 0.5264 2.6530 -1.6500 38 1 1.2972 2.2083 -3.1914 39 1 0.5706 0.9493 -2.1638 40 1 2.6291 3.7950 -0.9286 41 1 4.1703 2.9045 -0.9289 42 1 3.1478 2.9116 -3.5611 43 1 4.1036 4.5622 -6.2977 44 1 -0.3525 -2.0954 1.1059 45 1 -2.1669 -4.4859 -0.1384 46 1 -1.6460 -4.3072 1.5544 47 1 -1.1876 -5.7580 0.6304 48 1 0.1459 -6.5604 -1.1811 49 1 2.0899 -7.0642 -2.5896 50 1 3.8596 -5.3884 -2.9222 51 1 3.6975 -3.1851 -1.8452 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505822161.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:56 Heat of formation + Delta-G solvation = 25.543675 kcal Electronic energy + Delta-G solvation = -30580.701947 eV Core-core repulsion = 26673.418875 eV Total energy + Delta-G solvation = -3907.283072 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.53610 -40.87935 -38.58302 -38.05874 -36.34750 -34.94119 -33.77378 -32.19151 -31.23415 -30.17355 -28.82492 -28.37682 -27.64394 -27.29392 -26.38109 -24.53756 -23.73900 -22.84810 -21.95841 -20.27589 -19.77525 -19.11140 -18.29552 -17.74538 -17.06832 -16.90907 -16.65427 -16.51960 -16.25205 -16.14047 -15.46818 -15.35988 -15.13817 -14.87194 -14.81810 -14.43600 -14.26619 -14.13701 -13.89389 -13.74596 -13.66485 -13.49125 -13.26965 -13.03195 -12.94669 -12.74473 -12.59055 -12.57082 -12.42047 -12.28198 -12.17957 -12.11267 -11.93146 -11.65959 -11.62424 -11.50011 -10.92279 -10.85938 -10.57018 -9.53421 -9.22712 -8.96792 -8.62736 -7.93400 -5.21520 0.05354 0.58607 1.12397 1.45823 1.50010 1.55824 1.76824 1.98500 2.39429 2.57356 2.94463 3.39390 3.66242 3.71105 3.75405 3.85333 3.91650 3.97453 4.11736 4.22454 4.26170 4.27834 4.38811 4.48521 4.51241 4.53290 4.55717 4.63019 4.66544 4.74240 4.79526 4.79825 4.81860 4.83190 4.91088 4.93801 4.95979 5.09381 5.14584 5.16523 5.19168 5.41583 5.46659 5.48858 5.54099 5.56860 5.64742 5.70582 5.71855 6.15871 6.28236 6.28651 6.52736 7.33256 7.34869 8.12178 8.36259 9.30356 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017322 B = 0.002502 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.023581 B =11188.496537 C =12056.808312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.603 5.603 3 C 0.137 3.863 4 C -0.076 4.076 5 C -0.106 4.106 6 C -0.124 4.124 7 C 0.164 3.836 8 N -0.739 5.739 9 C -0.244 4.244 10 H 0.075 0.925 11 C -0.078 4.078 12 N -0.972 5.972 13 Si 0.976 3.024 14 H -0.281 1.281 15 H -0.295 1.295 16 H -0.274 1.274 17 C 0.585 3.415 18 O -0.586 6.586 19 C -0.267 4.267 20 C 0.131 3.869 21 N -0.468 5.468 22 C 0.065 3.935 23 C 0.075 3.925 24 C -0.118 4.118 25 C -0.106 4.106 26 C -0.144 4.144 27 C -0.104 4.104 28 C -0.096 4.096 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.028 0.972 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.029 0.971 39 H 0.067 0.933 40 H 0.033 0.967 41 H 0.008 0.992 42 H 0.375 0.625 43 H 0.251 0.749 44 H 0.218 0.782 45 H 0.089 0.911 46 H 0.111 0.889 47 H 0.095 0.905 48 H 0.155 0.845 49 H 0.158 0.842 50 H 0.134 0.866 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.685 -23.455 15.729 33.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.334 5.334 3 C 0.013 3.987 4 C -0.078 4.078 5 C -0.164 4.164 6 C -0.181 4.181 7 C 0.037 3.963 8 N -0.383 5.383 9 C -0.376 4.376 10 H 0.093 0.907 11 C -0.270 4.270 12 N -0.623 5.623 13 Si 0.804 3.196 14 H -0.207 1.207 15 H -0.221 1.221 16 H -0.200 1.200 17 C 0.376 3.624 18 O -0.467 6.467 19 C -0.278 4.278 20 C -0.002 4.002 21 N -0.148 5.148 22 C -0.074 4.074 23 C -0.030 4.030 24 C -0.138 4.138 25 C -0.125 4.125 26 C -0.162 4.162 27 C -0.123 4.123 28 C -0.100 4.100 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.127 0.873 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.026 0.974 42 H 0.208 0.792 43 H 0.059 0.941 44 H 0.235 0.765 45 H 0.108 0.892 46 H 0.130 0.870 47 H 0.113 0.887 48 H 0.172 0.828 49 H 0.175 0.825 50 H 0.152 0.848 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.316 -23.466 15.960 33.776 hybrid contribution 1.255 0.987 -1.068 1.921 sum -17.061 -22.479 14.892 31.909 Atomic orbital electron populations 1.22400 0.77426 1.04734 1.03459 1.47648 1.08255 1.04617 1.72899 1.21351 0.97805 0.85053 0.94454 1.21013 0.96095 0.94126 0.96557 1.21513 0.98722 0.97368 0.98809 1.21762 0.95367 1.01515 0.99454 1.20729 0.95877 0.93413 0.86265 1.42587 1.67875 1.25092 1.02749 1.19631 1.27074 0.98846 0.92043 0.90718 1.25580 1.03392 1.02553 0.95471 1.69830 1.53399 1.40830 0.98194 0.85180 0.78551 0.79637 0.76199 1.20742 1.22147 1.20011 1.17642 0.86167 0.83557 0.75050 1.90767 1.16060 1.87906 1.51930 1.19940 1.00166 0.95174 1.12497 1.22670 0.93653 0.86132 0.97740 1.43903 1.19373 1.11981 1.39583 1.22448 0.82949 0.99275 1.02752 1.18428 0.90609 0.95654 0.98299 1.20396 1.00500 0.93805 0.99087 1.21180 0.92877 1.00094 0.98300 1.21204 1.00760 0.93135 1.01137 1.20611 0.96698 0.97610 0.97413 1.19058 0.96391 0.93726 1.00861 0.89339 0.89436 0.90421 0.87317 0.91742 0.93855 0.95271 0.94871 0.91198 0.95184 0.91382 0.94897 0.97439 0.79165 0.94080 0.76529 0.89216 0.87038 0.88680 0.82775 0.82485 0.84761 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 7.79 127.77 0.99 1.86 16 2 N -0.60 -14.94 2.40 -851.23 -2.04 -16.98 16 3 C 0.14 3.90 4.59 86.38 0.40 4.30 16 4 C -0.08 -2.72 0.60 -52.18 -0.03 -2.75 16 5 C -0.11 -4.45 7.06 71.98 0.51 -3.94 16 6 C -0.12 -4.00 7.07 71.98 0.51 -3.49 16 7 C 0.16 7.07 5.15 86.38 0.44 7.52 16 8 N -0.74 -39.92 5.00 -343.43 -1.72 -41.64 16 9 C -0.24 -14.32 9.99 84.03 0.84 -13.48 16 10 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 11 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 12 N -0.97 -62.04 13.06 21.65 0.28 -61.76 16 13 Si 0.98 48.01 29.55 68.60 2.03 50.03 16 14 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 15 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 16 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 17 C 0.58 18.26 5.82 86.52 0.50 18.76 16 18 O -0.59 -24.00 15.31 -4.25 -0.07 -24.07 16 19 C -0.27 -6.93 5.48 -19.01 -0.10 -7.03 16 20 C 0.13 1.98 9.02 83.70 0.75 2.73 16 21 N -0.47 -6.27 3.14 -538.62 -1.69 -7.97 16 22 C 0.06 0.17 10.99 127.77 1.40 1.58 16 23 C 0.07 1.51 6.79 38.91 0.26 1.78 16 24 C -0.12 -1.88 9.91 22.37 0.22 -1.66 16 25 C -0.11 -1.81 10.01 22.28 0.22 -1.59 16 26 C -0.14 -3.33 10.03 22.28 0.22 -3.11 16 27 C -0.10 -3.17 10.09 22.41 0.23 -2.94 16 28 C -0.10 -2.71 6.36 -20.08 -0.13 -2.84 16 29 H 0.09 0.62 7.35 -2.39 -0.02 0.60 16 30 H 0.09 1.16 6.30 -2.39 -0.02 1.14 16 31 H 0.08 1.03 5.95 -2.39 -0.01 1.01 16 32 H 0.11 2.38 8.07 -2.38 -0.02 2.36 16 33 H 0.06 2.14 7.35 -2.39 -0.02 2.12 16 34 H 0.04 1.74 6.22 -2.39 -0.01 1.72 16 35 H 0.03 1.35 6.86 -2.39 -0.02 1.34 16 36 H 0.03 1.48 7.85 -2.39 -0.02 1.47 16 37 H 0.07 1.95 8.07 -2.38 -0.02 1.93 16 38 H 0.03 1.18 6.86 -2.39 -0.02 1.17 16 39 H 0.07 1.87 6.07 -2.39 -0.01 1.86 16 40 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.37 21.59 5.36 -92.71 -0.50 21.09 16 43 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.22 1.29 6.33 -2.91 -0.02 1.28 16 45 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.11 -0.22 8.13 -2.39 -0.02 -0.24 16 47 H 0.09 0.09 8.03 -2.39 -0.02 0.07 16 48 H 0.15 1.28 8.01 -2.91 -0.02 1.26 16 49 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 50 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 51 H 0.09 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -86.29 399.58 4.95 -81.34 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.44 Total: 29.56 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 7.72 Total: -8.52 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -5.17 Total: -128.35 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.07 Total: -24.07 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.03 kcal Total: -86.29 4.95 -81.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505822161.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.885 kcal (2) G-P(sol) polarization free energy of solvation -86.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds