Wall clock time and date at job start Wed Apr 1 2020 02:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47383 * 2 1 4 4 H 1.09001 * 109.47325 * 305.00061 * 3 2 1 5 5 F 1.39898 * 109.47363 * 65.00024 * 3 2 1 6 6 C 1.50696 * 109.47318 * 185.00272 * 3 2 1 7 7 O 1.21289 * 119.99676 * 314.99811 * 6 3 2 8 8 N 1.34773 * 120.00434 * 135.00285 * 6 3 2 9 9 C 1.46500 * 120.00089 * 179.72737 * 8 6 3 10 10 C 1.53005 * 109.47178 * 176.72617 * 9 8 6 11 11 H 1.08996 * 109.00571 * 187.76673 * 10 9 8 12 12 C 1.54431 * 109.02585 * 68.92814 * 10 9 8 13 13 C 1.50750 * 109.03729 * 162.02013 * 12 10 9 14 14 C 1.54171 * 112.61358 * 93.01085 * 13 12 10 15 15 C 1.53823 * 111.96972 * 318.48671 * 14 13 12 16 16 C 1.50821 * 111.62170 * 319.04730 * 15 14 13 17 17 N 1.39781 * 109.01959 * 306.67224 * 10 9 8 18 18 C 1.46896 * 111.00065 * 309.72611 * 17 10 9 19 19 C 1.50704 * 109.47407 * 164.33105 * 18 17 10 20 20 O 1.21297 * 119.99717 * 359.97438 * 19 18 17 21 21 N 1.34772 * 120.00259 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00105 * 179.97438 * 21 19 18 23 23 H 1.08006 * 119.99647 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00114 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99892 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 120.00006 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47019 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47147 * 120.00241 * 26 24 22 29 29 H 1.48496 * 109.47082 * 240.00131 * 26 24 22 30 30 H 1.08995 * 109.47425 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46876 * 300.00308 * 1 2 3 32 32 H 1.08999 * 109.46924 * 59.99644 * 1 2 3 33 33 H 1.09005 * 109.46838 * 239.99630 * 2 1 3 34 34 H 1.08999 * 109.46924 * 120.00356 * 2 1 3 35 35 H 0.97005 * 120.00030 * 359.97438 * 8 6 3 36 36 H 1.09007 * 109.47063 * 296.71958 * 9 8 6 37 37 H 1.09000 * 109.47732 * 56.72351 * 9 8 6 38 38 H 1.09006 * 109.54003 * 281.89107 * 12 10 9 39 39 H 1.09003 * 109.54167 * 42.15007 * 12 10 9 40 40 H 1.08998 * 108.85022 * 332.20648 * 13 12 10 41 41 H 1.08998 * 108.85734 * 213.81854 * 13 12 10 42 42 H 1.08995 * 108.98442 * 197.85352 * 14 13 12 43 43 H 1.08998 * 108.91377 * 79.08236 * 14 13 12 44 44 H 1.09002 * 109.05442 * 198.49107 * 15 14 13 45 45 H 1.09010 * 109.04999 * 79.59595 * 15 14 13 46 46 H 1.09000 * 109.74463 * 335.42018 * 16 15 14 47 47 H 1.08997 * 109.74165 * 214.69674 * 16 15 14 48 48 H 1.09006 * 109.47383 * 284.33011 * 18 17 10 49 49 H 1.09005 * 109.47412 * 44.33310 * 18 17 10 50 50 H 0.96998 * 119.99832 * 0.02562 * 21 19 18 51 51 H 0.97004 * 119.99816 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 9 1.6700 2.0679 1.1954 6 6 3.5419 1.4442 -0.1239 7 8 4.2064 0.6809 0.5446 8 7 4.1467 2.2940 -0.9774 9 6 5.6071 2.2998 -1.0934 10 6 6.0284 3.2904 -2.1807 11 1 7.0992 3.1893 -2.3574 12 6 5.7332 4.7264 -1.6953 13 6 6.5255 5.7002 -2.5299 14 6 5.7292 6.2292 -3.7394 15 6 4.9185 5.1167 -4.4258 16 6 5.7042 3.8327 -4.5180 17 7 5.3418 2.9907 -3.3608 18 6 5.4592 1.5641 -3.6905 19 6 4.4203 1.1990 -4.7193 20 8 3.6567 2.0441 -5.1365 21 7 4.3395 -0.0665 -5.1758 22 6 3.3940 -0.3987 -6.1114 23 1 2.7142 0.3539 -6.4828 24 6 3.3104 -1.7035 -6.5816 25 7 4.1372 -2.6192 -6.1292 26 14 2.0225 -2.1560 -7.8569 27 1 1.2209 -0.9537 -8.1991 28 1 2.6940 -2.6680 -9.0785 29 1 1.1285 -3.2061 -7.3065 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.6153 2.9042 -1.5123 36 1 6.0461 2.5974 -0.1411 37 1 5.9547 1.3010 -1.3574 38 1 4.6688 4.9358 -1.8026 39 1 6.0217 4.8240 -0.6487 40 1 7.4259 5.2033 -2.8910 41 1 6.8178 6.5437 -1.9044 42 1 6.4241 6.6582 -4.4612 43 1 5.0460 7.0076 -3.3995 44 1 4.6484 5.4415 -5.4306 45 1 4.0076 4.9362 -3.8548 46 1 6.7717 4.0516 -4.4942 47 1 5.4545 3.3139 -5.4435 48 1 6.4531 1.3642 -4.0910 49 1 5.3038 0.9691 -2.7904 50 1 4.9498 -0.7424 -4.8419 51 1 4.0786 -3.5302 -6.4573 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506573305.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:52 Heat of formation + Delta-G solvation = -121.192597 kcal Electronic energy + Delta-G solvation = -32406.045083 eV Core-core repulsion = 28061.629825 eV Total energy + Delta-G solvation = -4344.415259 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -47.87692 -40.47066 -39.08870 -37.77555 -35.30666 -34.24634 -33.95110 -33.59479 -32.04733 -31.24205 -28.68535 -28.16390 -26.55186 -25.50590 -24.04775 -23.21185 -22.13209 -20.59625 -20.05756 -19.54502 -19.04542 -17.89060 -17.81169 -16.88009 -16.56246 -15.94236 -15.70291 -15.39105 -15.25057 -14.80863 -14.69192 -14.40671 -14.30354 -14.07939 -13.87392 -13.73511 -13.58596 -13.33183 -12.99185 -12.84576 -12.52785 -12.29644 -12.29453 -12.12587 -11.97499 -11.89390 -11.54677 -11.48552 -11.14091 -11.09500 -10.89064 -10.86637 -10.61351 -10.50178 -10.37653 -10.29738 -10.25558 -10.19342 -9.72183 -9.50276 -9.03276 -8.44797 -7.98448 -7.88351 -6.43535 -3.84545 2.49167 3.02476 3.13923 3.24934 3.31110 3.86986 3.92636 4.19079 4.43571 4.50680 4.58551 4.63779 4.68767 4.85112 4.90919 5.04464 5.09127 5.16637 5.22891 5.26260 5.32686 5.39452 5.43044 5.50558 5.59275 5.63349 5.64826 5.73203 5.81507 5.84001 5.89647 5.91131 5.95739 6.04232 6.06304 6.15765 6.19145 6.19585 6.22896 6.29763 6.40764 6.52805 6.62963 7.26679 7.49032 7.52854 7.61027 8.04404 8.14604 8.59447 9.16237 9.52952 10.04099 10.74146 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.007050 B = 0.004649 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3970.529342 B = 6021.591982 C = 8880.629320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.141 4.141 3 C 0.083 3.917 4 H 0.102 0.898 5 F -0.194 7.194 6 C 0.492 3.508 7 O -0.531 6.531 8 N -0.701 5.701 9 C 0.116 3.884 10 C 0.094 3.906 11 H 0.041 0.959 12 C -0.111 4.111 13 C -0.119 4.119 14 C -0.119 4.119 15 C -0.110 4.110 16 C 0.079 3.921 17 N -0.530 5.530 18 C 0.039 3.961 19 C 0.445 3.555 20 O -0.576 6.576 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.927 3.073 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.413 0.587 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.077 0.923 46 H 0.030 0.970 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.093 0.907 50 H 0.391 0.609 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 11.996 9.823 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.179 4.179 3 C 0.044 3.956 4 H 0.120 0.880 5 F -0.175 7.175 6 C 0.276 3.724 7 O -0.407 6.407 8 N -0.354 5.354 9 C -0.008 4.008 10 C -0.016 4.016 11 H 0.058 0.942 12 C -0.149 4.149 13 C -0.156 4.156 14 C -0.156 4.156 15 C -0.148 4.148 16 C -0.047 4.047 17 N -0.255 5.255 18 C -0.092 4.092 19 C 0.230 3.770 20 O -0.460 6.460 21 N -0.202 5.202 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.754 3.246 27 H -0.193 1.193 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.250 0.750 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.048 0.952 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.111 0.889 50 H 0.224 0.776 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.677 11.953 10.083 15.728 hybrid contribution 0.450 -0.641 -0.854 1.159 sum 2.127 11.312 9.229 14.754 Atomic orbital electron populations 1.21760 0.94230 1.02641 1.02337 1.21975 0.97283 0.93430 1.05180 1.21625 0.92135 0.96526 0.85333 0.87997 1.92852 1.92142 1.83997 1.48540 1.20924 0.90340 0.80835 0.80320 1.90714 1.66153 1.39348 1.44478 1.45892 1.07926 1.39360 1.42252 1.21720 0.80652 0.99969 0.98446 1.20772 0.95905 0.95006 0.89966 0.94173 1.21530 1.01859 0.92864 0.98657 1.21377 0.98838 0.98685 0.96729 1.21971 0.98735 0.98257 0.96668 1.21300 0.99558 0.93439 1.00459 1.21731 0.96092 0.93605 0.93309 1.58278 1.60168 1.03508 1.03557 1.22037 0.98012 0.89111 1.00009 1.19710 0.87782 0.83591 0.85939 1.90512 1.45076 1.48838 1.61553 1.41889 1.32250 1.08306 1.37759 1.19706 1.11431 0.94979 1.16595 0.87912 1.25245 0.98287 0.95512 0.98850 1.69622 1.37444 1.03139 1.43985 0.85841 0.80173 0.78636 0.79936 1.19258 1.20809 1.20767 0.91731 0.92251 0.92096 0.89288 0.89720 0.74975 0.91069 0.90744 0.90500 0.91415 0.92476 0.92518 0.92759 0.92545 0.92193 0.90423 0.95180 0.89377 0.93486 0.88888 0.77628 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.83 37.16 0.37 -1.28 16 2 C -0.14 -1.78 5.41 -26.73 -0.14 -1.92 16 3 C 0.08 1.06 3.77 -27.89 -0.11 0.96 16 4 H 0.10 1.12 7.99 -51.93 -0.42 0.71 16 5 F -0.19 -2.66 16.75 2.25 0.04 -2.62 16 6 C 0.49 7.20 7.17 -10.99 -0.08 7.12 16 7 O -0.53 -9.44 16.61 5.55 0.09 -9.35 16 8 N -0.70 -8.99 4.89 -60.29 -0.29 -9.29 16 9 C 0.12 1.40 4.44 -4.04 -0.02 1.39 16 10 C 0.09 1.07 1.72 -70.63 -0.12 0.95 16 11 H 0.04 0.45 7.54 -51.93 -0.39 0.06 16 12 C -0.11 -1.08 4.74 -27.11 -0.13 -1.21 16 13 C -0.12 -1.10 5.31 -27.25 -0.14 -1.25 16 14 C -0.12 -1.19 5.91 -25.69 -0.15 -1.34 16 15 C -0.11 -1.39 5.41 -27.40 -0.15 -1.54 16 16 C 0.08 1.12 4.66 -4.52 -0.02 1.10 16 17 N -0.53 -7.39 2.87 -233.11 -0.67 -8.06 16 18 C 0.04 0.64 5.02 -4.98 -0.02 0.61 16 19 C 0.44 9.66 7.21 -10.99 -0.08 9.58 16 20 O -0.58 -14.00 14.37 5.54 0.08 -13.92 16 21 N -0.57 -13.68 5.29 -10.96 -0.06 -13.74 16 22 C -0.30 -7.97 9.68 -14.94 -0.14 -8.11 16 23 H 0.10 2.89 7.16 -52.48 -0.38 2.51 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 26 Si 0.93 20.60 29.55 -169.99 -5.02 15.57 16 27 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 29 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.61 7.93 -51.93 -0.41 0.19 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.08 1.12 8.05 -51.93 -0.42 0.70 16 35 H 0.41 5.08 7.60 -40.82 -0.31 4.77 16 36 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16 37 H 0.07 0.99 6.21 -51.93 -0.32 0.67 16 38 H 0.08 0.80 6.81 -51.93 -0.35 0.45 16 39 H 0.07 0.59 7.89 -51.93 -0.41 0.18 16 40 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.08 7.26 -51.92 -0.38 0.71 16 46 H 0.03 0.39 6.66 -51.93 -0.35 0.04 16 47 H 0.09 1.55 6.15 -51.93 -0.32 1.23 16 48 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 49 H 0.09 1.49 5.07 -51.93 -0.26 1.23 16 50 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 51 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 398.65 15.07 6.01 6.01 Total: -1.00 -30.21 398.65 -8.45 -38.66 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -8.31 Total: 14.56 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -1.04 Total: 5.57 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.30 Total: -54.49 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.17 Total: -23.27 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.21 -8.45 -38.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506573305.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.533 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds