Wall clock time and date at job start Wed Apr 1 2020 02:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47383 * 2 1 4 4 H 1.09001 * 109.47325 * 305.00061 * 3 2 1 5 5 F 1.39898 * 109.47363 * 65.00024 * 3 2 1 6 6 C 1.50696 * 109.47318 * 185.00272 * 3 2 1 7 7 O 1.21289 * 119.99676 * 314.99811 * 6 3 2 8 8 N 1.34773 * 120.00434 * 135.00285 * 6 3 2 9 9 C 1.46500 * 120.00089 * 179.72737 * 8 6 3 10 10 C 1.53005 * 109.47178 * 176.72617 * 9 8 6 11 11 H 1.08996 * 109.00571 * 187.76673 * 10 9 8 12 12 C 1.54431 * 109.02585 * 68.92814 * 10 9 8 13 13 C 1.50750 * 109.03729 * 162.02013 * 12 10 9 14 14 C 1.54171 * 112.61358 * 93.01085 * 13 12 10 15 15 C 1.53823 * 111.96972 * 318.48671 * 14 13 12 16 16 C 1.50821 * 111.62170 * 319.04730 * 15 14 13 17 17 N 1.39781 * 109.01959 * 306.67224 * 10 9 8 18 18 C 1.46896 * 111.00065 * 309.72611 * 17 10 9 19 19 C 1.50704 * 109.47407 * 164.33105 * 18 17 10 20 20 O 1.21297 * 119.99717 * 359.97438 * 19 18 17 21 21 N 1.34772 * 120.00259 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00105 * 179.97438 * 21 19 18 23 23 H 1.08006 * 119.99647 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00114 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99892 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 120.00006 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47019 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47147 * 120.00241 * 26 24 22 29 29 H 1.48496 * 109.47082 * 240.00131 * 26 24 22 30 30 H 1.08995 * 109.47425 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46876 * 300.00308 * 1 2 3 32 32 H 1.08999 * 109.46924 * 59.99644 * 1 2 3 33 33 H 1.09005 * 109.46838 * 239.99630 * 2 1 3 34 34 H 1.08999 * 109.46924 * 120.00356 * 2 1 3 35 35 H 0.97005 * 120.00030 * 359.97438 * 8 6 3 36 36 H 1.09007 * 109.47063 * 296.71958 * 9 8 6 37 37 H 1.09000 * 109.47732 * 56.72351 * 9 8 6 38 38 H 1.09006 * 109.54003 * 281.89107 * 12 10 9 39 39 H 1.09003 * 109.54167 * 42.15007 * 12 10 9 40 40 H 1.08998 * 108.85022 * 332.20648 * 13 12 10 41 41 H 1.08998 * 108.85734 * 213.81854 * 13 12 10 42 42 H 1.08995 * 108.98442 * 197.85352 * 14 13 12 43 43 H 1.08998 * 108.91377 * 79.08236 * 14 13 12 44 44 H 1.09002 * 109.05442 * 198.49107 * 15 14 13 45 45 H 1.09010 * 109.04999 * 79.59595 * 15 14 13 46 46 H 1.09000 * 109.74463 * 335.42018 * 16 15 14 47 47 H 1.08997 * 109.74165 * 214.69674 * 16 15 14 48 48 H 1.09006 * 109.47383 * 284.33011 * 18 17 10 49 49 H 1.09005 * 109.47412 * 44.33310 * 18 17 10 50 50 H 0.96998 * 119.99832 * 0.02562 * 21 19 18 51 51 H 0.97004 * 119.99816 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 9 1.6700 2.0679 1.1954 6 6 3.5419 1.4442 -0.1239 7 8 4.2064 0.6809 0.5446 8 7 4.1467 2.2940 -0.9774 9 6 5.6071 2.2998 -1.0934 10 6 6.0284 3.2904 -2.1807 11 1 7.0992 3.1893 -2.3574 12 6 5.7332 4.7264 -1.6953 13 6 6.5255 5.7002 -2.5299 14 6 5.7292 6.2292 -3.7394 15 6 4.9185 5.1167 -4.4258 16 6 5.7042 3.8327 -4.5180 17 7 5.3418 2.9907 -3.3608 18 6 5.4592 1.5641 -3.6905 19 6 4.4203 1.1990 -4.7193 20 8 3.6567 2.0441 -5.1365 21 7 4.3395 -0.0665 -5.1758 22 6 3.3940 -0.3987 -6.1114 23 1 2.7142 0.3539 -6.4828 24 6 3.3104 -1.7035 -6.5816 25 7 4.1372 -2.6192 -6.1292 26 14 2.0225 -2.1560 -7.8569 27 1 1.2209 -0.9537 -8.1991 28 1 2.6940 -2.6680 -9.0785 29 1 1.1285 -3.2061 -7.3065 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.6153 2.9042 -1.5123 36 1 6.0461 2.5974 -0.1411 37 1 5.9547 1.3010 -1.3574 38 1 4.6688 4.9358 -1.8026 39 1 6.0217 4.8240 -0.6487 40 1 7.4259 5.2033 -2.8910 41 1 6.8178 6.5437 -1.9044 42 1 6.4241 6.6582 -4.4612 43 1 5.0460 7.0076 -3.3995 44 1 4.6484 5.4415 -5.4306 45 1 4.0076 4.9362 -3.8548 46 1 6.7717 4.0516 -4.4942 47 1 5.4545 3.3139 -5.4435 48 1 6.4531 1.3642 -4.0910 49 1 5.3038 0.9691 -2.7904 50 1 4.9498 -0.7424 -4.8419 51 1 4.0786 -3.5302 -6.4573 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506573305.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:50 Heat of formation + Delta-G solvation = -140.705723 kcal Electronic energy + Delta-G solvation = -32406.891236 eV Core-core repulsion = 28061.629825 eV Total energy + Delta-G solvation = -4345.261411 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.94813 -41.61326 -40.34639 -39.40814 -36.33433 -35.96866 -34.99267 -34.90788 -33.20949 -33.05151 -29.82705 -29.36280 -27.54493 -27.00150 -25.51658 -24.21785 -23.14229 -21.68495 -21.34962 -20.74686 -20.28412 -19.80507 -18.90968 -17.99115 -17.85179 -17.29293 -16.85404 -16.68287 -16.42618 -16.34456 -15.80882 -15.71398 -15.60222 -15.38921 -15.12077 -15.04800 -14.71881 -14.47202 -14.07733 -13.95524 -13.84043 -13.54308 -13.42891 -13.28758 -13.20856 -13.03077 -12.91189 -12.89298 -12.54350 -12.36521 -12.11025 -12.06622 -11.94784 -11.88169 -11.59998 -11.45787 -11.41960 -11.20095 -11.09193 -10.88802 -10.22336 -10.11680 -9.94838 -9.10455 -8.42934 -5.90773 1.32943 1.37391 1.42705 1.56025 1.95856 2.11371 2.29838 2.76216 3.24197 3.34299 3.39684 3.55196 3.63064 3.65308 3.79445 3.88802 3.98689 4.18555 4.23601 4.31884 4.34377 4.37330 4.39997 4.46563 4.48706 4.51628 4.64675 4.69421 4.72610 4.74973 4.84725 4.93235 5.01675 5.03933 5.09541 5.15170 5.27053 5.28609 5.32925 5.37117 5.39044 5.44593 5.56138 5.62902 5.95642 6.13832 6.38551 6.53076 6.64688 7.02947 7.17698 7.62091 8.17050 8.74829 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.007050 B = 0.004649 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3970.529342 B = 6021.591982 C = 8880.629320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.085 3.915 4 H 0.122 0.878 5 F -0.197 7.197 6 C 0.488 3.512 7 O -0.567 6.567 8 N -0.693 5.693 9 C 0.115 3.885 10 C 0.096 3.904 11 H 0.054 0.946 12 C -0.105 4.105 13 C -0.116 4.116 14 C -0.112 4.112 15 C -0.105 4.105 16 C 0.083 3.917 17 N -0.532 5.532 18 C 0.053 3.947 19 C 0.448 3.552 20 O -0.601 6.601 21 N -0.580 5.580 22 C -0.322 4.322 23 H 0.082 0.918 24 C -0.015 4.015 25 N -0.924 5.924 26 Si 0.988 3.012 27 H -0.271 1.271 28 H -0.275 1.275 29 H -0.274 1.274 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.417 0.583 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.048 0.952 48 H 0.060 0.940 49 H 0.101 0.899 50 H 0.391 0.609 51 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 13.379 10.442 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.046 3.954 4 H 0.140 0.860 5 F -0.178 7.178 6 C 0.272 3.728 7 O -0.446 6.446 8 N -0.344 5.344 9 C -0.008 4.008 10 C -0.014 4.014 11 H 0.072 0.928 12 C -0.143 4.143 13 C -0.154 4.154 14 C -0.150 4.150 15 C -0.143 4.143 16 C -0.044 4.044 17 N -0.257 5.257 18 C -0.078 4.078 19 C 0.235 3.765 20 O -0.486 6.486 21 N -0.217 5.217 22 C -0.452 4.452 23 H 0.100 0.900 24 C -0.214 4.214 25 N -0.566 5.566 26 Si 0.813 3.187 27 H -0.195 1.195 28 H -0.200 1.200 29 H -0.199 1.199 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.255 0.745 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.119 0.881 50 H 0.224 0.776 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.038 13.371 10.701 17.246 hybrid contribution 0.374 -0.995 -1.037 1.485 sum 2.413 12.376 9.664 15.887 Atomic orbital electron populations 1.21748 0.92601 1.03342 1.02881 1.21958 0.98688 0.93191 1.04046 1.21685 0.91071 0.96865 0.85766 0.86011 1.92843 1.92062 1.84023 1.48903 1.21259 0.91055 0.80454 0.80019 1.90693 1.67033 1.40840 1.46030 1.45905 1.08457 1.38631 1.41449 1.21795 0.80102 0.99559 0.99387 1.20869 0.96256 0.96032 0.88211 0.92841 1.21511 1.01683 0.91424 0.99688 1.21365 0.98387 0.99192 0.96444 1.21909 0.98786 0.97216 0.97040 1.21226 0.99265 0.93690 1.00107 1.21636 0.97342 0.93739 0.91642 1.58263 1.61214 1.01845 1.04373 1.21846 0.96502 0.91044 0.98397 1.20607 0.87829 0.82388 0.85628 1.90492 1.46332 1.49381 1.62425 1.41972 1.32347 1.09253 1.38173 1.19655 1.12344 0.95125 1.18091 0.90027 1.25977 0.99987 0.95059 1.00364 1.69693 1.38543 1.03444 1.44923 0.84929 0.77878 0.78165 0.77756 1.19516 1.20013 1.19928 0.91024 0.91524 0.91666 0.90641 0.90642 0.74536 0.89691 0.92041 0.91107 0.89677 0.92441 0.90602 0.91972 0.91572 0.93197 0.91883 0.93382 0.93334 0.92182 0.88127 0.77588 0.91588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.83 71.98 0.71 -2.35 16 2 C -0.14 -3.55 5.41 30.59 0.17 -3.38 16 3 C 0.09 2.13 3.77 29.84 0.11 2.24 16 4 H 0.12 2.54 7.99 -2.39 -0.02 2.52 16 5 F -0.20 -5.19 16.75 44.97 0.75 -4.44 16 6 C 0.49 14.06 7.17 87.66 0.63 14.69 16 7 O -0.57 -20.19 16.61 -3.06 -0.05 -20.24 16 8 N -0.69 -17.04 4.89 -463.05 -2.26 -19.30 16 9 C 0.12 2.60 4.44 86.38 0.38 2.98 16 10 C 0.10 1.97 1.72 46.69 0.08 2.05 16 11 H 0.05 1.02 7.54 -2.39 -0.02 1.00 16 12 C -0.11 -1.72 4.74 30.35 0.14 -1.58 16 13 C -0.12 -1.75 5.31 30.26 0.16 -1.59 16 14 C -0.11 -1.94 5.91 31.27 0.18 -1.76 16 15 C -0.10 -2.56 5.41 30.16 0.16 -2.39 16 16 C 0.08 2.29 4.66 85.46 0.40 2.69 16 17 N -0.53 -14.25 2.87 -891.42 -2.56 -16.81 16 18 C 0.05 1.71 5.02 85.56 0.43 2.14 16 19 C 0.45 19.86 7.21 87.66 0.63 20.50 16 20 O -0.60 -29.97 14.37 -3.08 -0.04 -30.02 16 21 N -0.58 -28.79 5.29 -306.98 -1.62 -30.41 16 22 C -0.32 -17.71 9.68 84.04 0.81 -16.90 16 23 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 25 N -0.92 -49.86 13.05 21.66 0.28 -49.57 16 26 Si 0.99 42.41 29.55 68.60 2.03 44.44 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 29 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.27 7.93 -2.39 -0.02 1.25 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.07 2.02 8.05 -2.39 -0.02 2.00 16 35 H 0.42 9.75 7.60 -92.70 -0.70 9.04 16 36 H 0.08 1.74 7.95 -2.38 -0.02 1.72 16 37 H 0.06 1.58 6.21 -2.39 -0.01 1.56 16 38 H 0.07 1.29 6.81 -2.38 -0.02 1.27 16 39 H 0.08 1.16 7.89 -2.39 -0.02 1.14 16 40 H 0.06 0.89 6.57 -2.39 -0.02 0.87 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.72 7.26 -2.38 -0.02 1.70 16 46 H 0.05 1.15 6.66 -2.39 -0.02 1.13 16 47 H 0.05 1.74 6.15 -2.39 -0.01 1.72 16 48 H 0.06 1.82 8.12 -2.38 -0.02 1.80 16 49 H 0.10 3.18 5.07 -2.38 -0.01 3.16 16 50 H 0.39 19.07 7.90 -92.71 -0.73 18.34 16 51 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -66.04 398.65 1.51 -64.53 By element: Atomic # 1 Polarization: 45.29 SS G_CDS: -0.48 Total: 44.81 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 5.47 Total: 17.02 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -6.16 Total: -116.11 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -0.10 Total: -50.26 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.75 Total: -4.44 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -66.04 1.51 -64.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506573305.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.172 kcal (2) G-P(sol) polarization free energy of solvation -66.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds