Wall clock time and date at job start Wed Apr 1 2020 02:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46777 * 2 1 4 4 N 1.46494 * 109.47456 * 120.00452 * 2 1 3 5 5 C 1.46508 * 119.99932 * 299.99695 * 4 2 1 6 6 C 1.52999 * 109.47125 * 270.00228 * 5 4 2 7 7 N 1.46500 * 109.46709 * 179.97438 * 6 5 4 8 8 C 1.46504 * 119.99801 * 90.00128 * 7 6 5 9 9 C 1.36938 * 120.00373 * 270.00117 * 7 6 5 10 10 H 1.07996 * 120.00468 * 145.49177 * 9 7 6 11 11 C 1.38812 * 119.99302 * 325.48699 * 9 7 6 12 12 N 1.31626 * 119.99714 * 154.01060 * 11 9 7 13 13 Si 1.86803 * 120.00590 * 334.01202 * 11 9 7 14 14 H 1.48495 * 109.47141 * 95.25736 * 13 11 9 15 15 H 1.48501 * 109.47176 * 215.26024 * 13 11 9 16 16 H 1.48502 * 109.46740 * 335.25348 * 13 11 9 17 17 C 1.34775 * 120.00212 * 119.99923 * 4 2 1 18 18 O 1.21285 * 120.00136 * 179.97438 * 17 4 2 19 19 C 1.50699 * 119.99919 * 0.27861 * 17 4 2 20 20 C 1.50696 * 109.47046 * 179.72393 * 19 17 4 21 21 C 1.34240 * 126.50498 * 264.68627 * 20 19 17 22 22 N 1.36829 * 109.93399 * 179.83422 * 21 20 19 23 23 H 0.96992 * 125.06410 * 180.18355 * 22 21 20 24 24 C 1.37689 * 109.87284 * 0.44463 * 22 21 20 25 25 C 1.39126 * 133.50899 * 179.71782 * 24 22 21 26 26 C 1.37750 * 119.77865 * 180.02562 * 25 24 22 27 27 C 1.38829 * 120.66562 * 0.02562 * 26 25 24 28 28 C 1.36624 * 120.52921 * 359.97438 * 27 26 25 29 29 C 1.39630 * 119.76665 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.46863 * 299.99454 * 1 2 3 31 31 H 1.09000 * 109.47507 * 59.99437 * 1 2 3 32 32 H 1.09001 * 109.46960 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46863 * 240.00546 * 2 1 3 34 34 H 1.09004 * 109.46682 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47413 * 300.00003 * 3 2 1 36 36 H 1.09002 * 109.46978 * 60.00616 * 3 2 1 37 37 H 1.09001 * 109.46391 * 30.00507 * 5 4 2 38 38 H 1.09003 * 109.46812 * 149.99852 * 5 4 2 39 39 H 1.08995 * 109.47138 * 299.99794 * 6 5 4 40 40 H 1.08997 * 109.47164 * 60.00139 * 6 5 4 41 41 H 1.09004 * 109.46963 * 85.10264 * 8 7 6 42 42 H 1.09000 * 109.47108 * 205.09994 * 8 7 6 43 43 H 1.08996 * 109.47166 * 325.09959 * 8 7 6 44 44 H 0.96998 * 120.00318 * 180.02562 * 12 11 9 45 45 H 1.09000 * 109.46957 * 299.72005 * 19 17 4 46 46 H 1.09000 * 109.47119 * 59.72238 * 19 17 4 47 47 H 1.07999 * 125.02809 * 359.97438 * 21 20 19 48 48 H 1.07994 * 120.11131 * 359.97438 * 25 24 22 49 49 H 1.07995 * 119.66220 * 180.02562 * 26 25 24 50 50 H 1.08006 * 119.73223 * 180.02562 * 27 26 25 51 51 H 1.07998 * 120.11729 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.6645 -0.1902 2.5267 6 6 2.7191 0.8169 2.9899 7 7 2.3649 1.3177 4.3203 8 6 2.8529 0.6273 5.5167 9 6 1.5777 2.4312 4.4455 10 1 0.8752 2.5068 5.2623 11 6 1.6827 3.4627 3.5226 12 7 0.6566 4.2577 3.3046 13 14 3.2802 3.7226 2.5898 14 1 3.2029 3.0366 1.2751 15 1 3.4988 5.1760 2.3778 16 1 4.4088 3.1617 3.3753 17 6 2.7932 -1.7864 1.0723 18 8 3.1980 -2.3580 2.0625 19 6 3.1624 -2.2975 -0.2964 20 6 4.0333 -3.5196 -0.1582 21 6 5.3751 -3.5507 -0.1815 22 7 5.8148 -4.8367 -0.0226 23 1 6.7455 -5.1091 -0.0035 24 6 4.7390 -5.6873 0.1001 25 6 4.6202 -7.0627 0.2726 26 6 3.3708 -7.6355 0.3631 27 6 2.2261 -6.8539 0.2835 28 6 2.3196 -5.5015 0.1142 29 6 3.5761 -4.8998 0.0200 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8901 37 1 0.6905 0.2972 2.4843 38 1 1.6239 -1.0228 3.2291 39 1 3.6931 0.3295 3.0322 40 1 2.7597 1.6494 2.2876 41 1 3.8514 0.9887 5.7629 42 1 2.1792 0.8250 6.3505 43 1 2.8912 -0.4453 5.3270 44 1 0.7297 4.9783 2.6595 45 1 2.2563 -2.5572 -0.8439 46 1 3.7056 -1.5237 -0.8389 47 1 6.0132 -2.6881 -0.3048 48 1 5.5047 -7.6793 0.3345 49 1 3.2808 -8.7033 0.4975 50 1 1.2540 -7.3188 0.3567 51 1 1.4248 -4.8999 0.0526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507863178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:48 Heat of formation + Delta-G solvation = 57.047091 kcal Electronic energy + Delta-G solvation = -30952.866636 eV Core-core repulsion = 27046.949655 eV Total energy + Delta-G solvation = -3905.916981 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.36792 -39.67703 -37.01652 -36.62495 -35.50525 -33.15243 -31.83378 -31.23682 -30.49993 -29.38693 -28.84514 -27.21323 -26.74249 -25.96342 -23.25452 -22.91576 -21.84371 -21.72904 -20.74993 -19.83366 -18.45078 -17.74726 -17.17756 -16.70580 -16.47864 -15.65702 -15.38881 -15.23392 -14.92076 -14.54001 -14.11606 -14.02202 -13.87031 -13.65580 -13.54849 -13.31622 -13.07157 -12.94877 -12.68032 -12.52511 -12.30398 -12.07746 -12.05800 -11.82050 -11.73068 -11.57985 -11.51210 -11.38382 -11.01505 -10.90723 -10.85484 -10.54925 -10.49363 -10.16840 -9.79052 -9.75213 -9.45764 -9.29902 -8.57254 -8.26882 -8.21565 -7.70962 -6.81199 -6.01063 -3.35279 1.06942 1.57881 2.54919 3.00444 3.03070 3.27436 3.42294 3.48318 3.55649 3.87935 4.52862 4.62978 4.69828 4.83362 4.86491 4.97983 5.02921 5.14177 5.15365 5.19631 5.30117 5.38917 5.42578 5.43843 5.48663 5.61384 5.73320 5.80983 5.85267 5.88849 5.92564 6.04317 6.07190 6.11012 6.17928 6.35633 6.39824 6.41958 6.43951 6.54603 6.56936 6.62062 6.65190 6.69117 6.71884 6.78874 6.92011 7.07861 7.09457 7.43028 7.85421 8.03588 8.36261 8.60014 9.00063 9.72599 10.14848 11.14446 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016428 B = 0.003006 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.033798 B = 9311.200189 C = 9544.773575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 C -0.173 4.173 4 N -0.604 5.604 5 C 0.098 3.902 6 C 0.125 3.875 7 N -0.610 5.610 8 C 0.124 3.876 9 C -0.268 4.268 10 H 0.080 0.920 11 C 0.036 3.964 12 N -0.896 5.896 13 Si 0.854 3.146 14 H -0.262 1.262 15 H -0.305 1.305 16 H -0.276 1.276 17 C 0.509 3.491 18 O -0.532 6.532 19 C -0.066 4.066 20 C -0.146 4.146 21 C 0.061 3.939 22 N -0.595 5.595 23 H 0.414 0.586 24 C 0.095 3.905 25 C -0.133 4.133 26 C -0.102 4.102 27 C -0.150 4.150 28 C -0.065 4.065 29 C -0.088 4.088 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.065 0.935 41 H 0.005 0.995 42 H 0.045 0.955 43 H 0.030 0.970 44 H 0.262 0.738 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.168 0.832 48 H 0.117 0.883 49 H 0.122 0.878 50 H 0.120 0.880 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.080 -18.745 -13.471 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.026 3.974 3 C -0.231 4.231 4 N -0.338 5.338 5 C -0.026 4.026 6 C -0.002 4.002 7 N -0.335 5.335 8 C -0.022 4.022 9 C -0.397 4.397 10 H 0.097 0.903 11 C -0.164 4.164 12 N -0.537 5.537 13 Si 0.684 3.316 14 H -0.189 1.189 15 H -0.233 1.233 16 H -0.201 1.201 17 C 0.296 3.704 18 O -0.408 6.408 19 C -0.107 4.107 20 C -0.154 4.154 21 C -0.065 4.065 22 N -0.198 5.198 23 H 0.251 0.749 24 C -0.012 4.012 25 C -0.154 4.154 26 C -0.122 4.122 27 C -0.169 4.169 28 C -0.084 4.084 29 C -0.093 4.093 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.023 0.977 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.072 0.928 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.185 0.815 48 H 0.135 0.865 49 H 0.140 0.860 50 H 0.138 0.862 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.356 -18.896 -12.968 23.783 hybrid contribution 1.360 0.387 -0.457 1.486 sum 7.716 -18.510 -13.425 24.133 Atomic orbital electron populations 1.22170 0.94807 1.02027 1.03254 1.21183 0.94780 0.93922 0.87499 1.22588 1.01218 0.95490 1.03788 1.48250 1.50500 1.27449 1.07612 1.22253 1.00790 0.98080 0.81474 1.21601 0.95034 0.95545 0.87992 1.44034 1.59771 1.30112 0.99562 1.21092 0.96517 0.94647 0.89900 1.18851 1.13485 0.93334 1.13989 0.90278 1.25365 0.96694 0.96057 0.98279 1.69930 1.28497 1.20234 1.35066 0.87411 0.87403 0.76050 0.80721 1.18902 1.23319 1.20134 1.20571 0.78530 0.80026 0.91282 1.90694 1.52968 1.57508 1.39673 1.20005 1.00008 0.94946 0.95723 1.19586 0.92438 0.92198 1.11158 1.21532 0.94892 0.86557 1.03541 1.41643 1.07602 1.05876 1.64665 0.74920 1.18230 0.87043 0.91953 1.03936 1.19978 0.98111 0.90743 1.06522 1.20756 0.91607 0.99435 1.00366 1.20596 0.98378 0.93667 1.04239 1.20261 0.95681 0.94466 0.97980 1.18995 0.92633 0.92458 1.05231 0.91072 0.91631 0.92602 0.89673 0.92561 0.91912 0.89789 0.89904 0.90956 0.94544 0.91754 0.97668 0.93628 0.95135 0.92814 0.88513 0.88508 0.81466 0.86530 0.86003 0.86205 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.17 37.16 0.34 -1.77 16 2 C 0.13 1.76 3.17 -67.93 -0.22 1.55 16 3 C -0.17 -2.70 6.96 37.16 0.26 -2.44 16 4 N -0.60 -9.95 2.40 -166.10 -0.40 -10.35 16 5 C 0.10 1.96 5.15 -4.04 -0.02 1.94 16 6 C 0.12 2.81 4.62 -4.04 -0.02 2.79 16 7 N -0.61 -15.13 2.52 -181.12 -0.46 -15.58 16 8 C 0.12 2.69 10.70 59.85 0.64 3.33 16 9 C -0.27 -7.50 9.89 -15.06 -0.15 -7.65 16 10 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 11 C 0.04 1.02 5.26 -17.43 -0.09 0.93 16 12 N -0.90 -26.41 13.97 55.49 0.78 -25.64 16 13 Si 0.85 21.24 24.56 -169.99 -4.17 17.07 16 14 H -0.26 -5.77 3.92 56.52 0.22 -5.55 16 15 H -0.30 -7.82 7.11 56.52 0.40 -7.41 16 16 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 17 C 0.51 8.35 7.67 -10.99 -0.08 8.27 16 18 O -0.53 -10.89 15.61 5.55 0.09 -10.80 16 19 C -0.07 -0.80 4.54 -29.04 -0.13 -0.93 16 20 C -0.15 -1.91 4.81 -102.71 -0.49 -2.40 16 21 C 0.06 0.68 11.73 -16.73 -0.20 0.48 16 22 N -0.60 -6.07 6.07 -10.65 -0.06 -6.13 16 23 H 0.41 2.82 8.96 -40.82 -0.37 2.45 16 24 C 0.10 1.17 7.28 -83.99 -0.61 0.56 16 25 C -0.13 -1.40 10.08 -39.43 -0.40 -1.80 16 26 C -0.10 -1.03 10.01 -39.54 -0.40 -1.43 16 27 C -0.15 -1.64 9.97 -39.95 -0.40 -2.03 16 28 C -0.07 -0.83 10.05 -39.65 -0.40 -1.23 16 29 C -0.09 -1.21 6.35 -105.14 -0.67 -1.88 16 30 H 0.07 1.10 6.66 -51.93 -0.35 0.75 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.89 5.77 -51.93 -0.30 0.59 16 34 H 0.06 0.88 7.57 -51.93 -0.39 0.49 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.65 4.97 -51.93 -0.26 1.39 16 37 H 0.08 1.73 6.43 -51.93 -0.33 1.40 16 38 H 0.07 1.53 7.42 -51.93 -0.39 1.15 16 39 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 40 H 0.06 1.47 1.00 -51.93 -0.05 1.42 16 41 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.04 0.95 8.00 -51.93 -0.42 0.53 16 43 H 0.03 0.61 8.11 -51.93 -0.42 0.19 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 45 H 0.10 0.99 7.79 -51.93 -0.40 0.59 16 46 H 0.10 0.95 7.79 -51.93 -0.40 0.54 16 47 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 48 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 49 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 50 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 51 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 398.44 15.07 6.00 6.00 Total: -1.00 -34.58 398.44 -9.30 -43.88 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -8.04 Total: 5.26 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -3.03 Total: -3.72 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.14 Total: -57.70 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.17 Total: 17.07 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.58 -9.30 -43.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507863178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.931 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds