Wall clock time and date at job start Wed Apr 1 2020 03:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.68947 * 2 1 4 4 C 1.53223 * 109.58297 * 239.65476 * 2 1 3 5 5 N 1.47271 * 108.80446 * 240.21020 * 4 2 1 6 6 C 1.47317 * 110.15803 * 299.18552 * 5 4 2 7 7 C 1.53203 * 108.80211 * 60.80859 * 6 5 4 8 8 N 1.47274 * 109.57970 * 120.33575 * 2 1 3 9 9 C 1.47312 * 110.15706 * 58.98148 * 8 2 1 10 10 C 1.47309 * 110.15435 * 60.80929 * 5 4 2 11 11 H 1.08998 * 109.58630 * 59.11720 * 10 5 4 12 12 C 1.50704 * 109.58375 * 179.38829 * 10 5 4 13 13 O 1.21280 * 119.99824 * 355.94743 * 12 10 5 14 14 N 1.34780 * 120.00347 * 175.94158 * 12 10 5 15 15 C 1.46502 * 119.99689 * 184.78107 * 14 12 10 16 16 H 1.08997 * 109.47208 * 328.09973 * 15 14 12 17 17 C 1.53004 * 109.46432 * 208.10373 * 15 14 12 18 18 C 1.50698 * 109.47189 * 65.45641 * 17 15 14 19 19 H 1.07997 * 119.99969 * 5.00880 * 18 17 15 20 20 C 1.37882 * 119.99693 * 185.01268 * 18 17 15 21 21 N 1.31512 * 120.00066 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99911 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46901 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47297 * 119.99671 * 22 20 18 25 25 H 1.48500 * 109.47014 * 240.00068 * 22 20 18 26 26 C 1.50697 * 109.47020 * 88.10725 * 15 14 12 27 27 C 1.38236 * 120.00394 * 39.72045 * 26 15 14 28 28 C 1.38231 * 119.99843 * 179.76561 * 27 26 15 29 29 C 1.38235 * 120.00422 * 0.48777 * 28 27 26 30 30 C 1.38242 * 119.99536 * 359.78748 * 29 28 27 31 31 C 1.38229 * 120.00296 * 359.95882 * 30 29 28 32 32 H 1.08999 * 109.47421 * 299.66403 * 1 2 3 33 33 H 1.08998 * 109.46861 * 59.66125 * 1 2 3 34 34 H 1.08998 * 109.47179 * 179.66122 * 1 2 3 35 35 H 1.08997 * 109.58650 * 0.02562 * 4 2 1 36 36 H 1.09006 * 109.58070 * 120.41798 * 4 2 1 37 37 H 1.08997 * 109.58028 * 180.60420 * 6 5 4 38 38 H 1.08998 * 109.57819 * 301.01113 * 6 5 4 39 39 H 1.09003 * 109.58302 * 240.21204 * 7 6 5 40 40 H 1.09000 * 109.58423 * 119.79703 * 7 6 5 41 41 H 1.08997 * 109.58697 * 180.60100 * 9 8 2 42 42 H 1.08998 * 109.58310 * 301.01456 * 9 8 2 43 43 H 0.96997 * 119.99613 * 4.78461 * 14 12 10 44 44 H 1.09000 * 109.46970 * 185.45670 * 17 15 14 45 45 H 1.09001 * 109.47221 * 305.45012 * 17 15 14 46 46 H 0.96998 * 120.00120 * 179.97438 * 21 20 18 47 47 H 1.07995 * 119.99635 * 359.97438 * 27 26 15 48 48 H 1.07998 * 120.00049 * 180.25345 * 28 27 26 49 49 H 1.07995 * 120.00161 * 179.76449 * 29 28 27 50 50 H 1.07997 * 119.99916 * 179.97438 * 30 29 28 51 51 H 1.07993 * 120.00612 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0263 0.0000 4 6 2.0436 -0.7293 -1.2458 5 7 2.8553 -1.8821 -0.8202 6 6 4.0100 -1.4251 -0.0279 7 6 3.4966 -0.6958 1.2178 8 7 2.0236 -0.7008 1.1976 9 6 1.5223 -2.0859 1.2179 10 6 2.0356 -2.8151 -0.0279 11 1 1.1918 -3.1588 -0.6261 12 6 2.8742 -3.9962 0.3879 13 8 4.0183 -4.0950 -0.0022 14 7 2.3528 -4.9428 1.1934 15 6 3.1978 -6.0350 1.6824 16 1 3.9552 -6.2711 0.9349 17 6 2.3341 -7.2712 1.9413 18 6 1.7684 -7.7709 0.6370 19 1 2.0654 -7.3086 -0.2928 20 6 0.8717 -8.8182 0.6307 21 7 0.5105 -9.3814 1.7629 22 14 0.1699 -9.4373 -0.9860 23 1 0.7313 -8.6407 -2.1065 24 1 0.5285 -10.8671 -1.1662 25 1 -1.3082 -9.2957 -0.9705 26 6 3.8704 -5.6148 2.9638 27 6 3.1709 -4.8802 3.9029 28 6 3.7864 -4.4989 5.0804 29 6 5.1045 -4.8435 5.3145 30 6 5.8058 -5.5733 4.3728 31 6 5.1887 -5.9591 3.1976 32 1 -0.3634 0.5086 0.8930 33 1 -0.3633 0.5191 -0.8869 34 1 -0.3633 -1.0276 -0.0061 35 1 1.1986 -1.0767 -1.8402 36 1 2.6559 -0.0508 -1.8399 37 1 4.6097 -2.2842 0.2729 38 1 4.6168 -0.7448 -0.6255 39 1 3.8584 0.3324 1.2143 40 1 3.8514 -1.2070 2.1127 41 1 1.8841 -2.5923 2.1127 42 1 0.4323 -2.0800 1.2145 43 1 1.4181 -4.9007 1.4492 44 1 2.9441 -8.0519 2.3957 45 1 1.5180 -7.0096 2.6149 46 1 -0.1207 -10.1180 1.7586 47 1 2.1425 -4.6071 3.7181 48 1 3.2387 -3.9285 5.8160 49 1 5.5865 -4.5423 6.2328 50 1 6.8357 -5.8422 4.5554 51 1 5.7366 -6.5288 2.4618 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548674282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:53 Heat of formation + Delta-G solvation = 20.242487 kcal Electronic energy + Delta-G solvation = -31818.003087 eV Core-core repulsion = 27910.490138 eV Total energy + Delta-G solvation = -3907.512948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.59531 -39.39749 -38.20295 -35.26563 -33.51978 -32.89192 -32.53432 -31.98736 -30.62545 -30.36271 -28.75772 -27.30165 -25.18601 -23.96684 -23.92626 -22.34515 -22.29455 -21.96866 -20.45970 -19.73964 -18.19269 -17.64517 -17.03605 -16.58541 -16.19105 -16.11808 -15.52376 -15.16493 -14.93156 -14.51590 -14.43104 -14.02050 -13.86388 -13.53237 -13.15503 -13.11096 -13.04470 -13.00635 -12.71925 -12.61875 -12.51786 -12.13819 -12.13285 -11.91746 -11.57765 -11.52668 -11.30500 -11.16323 -10.95591 -10.76475 -10.71050 -10.61259 -10.52111 -10.49500 -9.89037 -9.79052 -9.28485 -9.17534 -8.58034 -8.48119 -8.40980 -8.22695 -7.75033 -6.10226 -4.13272 1.73669 1.76200 3.05161 3.25417 3.34332 3.36987 3.39459 3.68809 4.08785 4.19835 4.39271 4.45820 4.63239 4.73418 4.77643 5.04766 5.09600 5.21329 5.23383 5.23862 5.25648 5.27523 5.29361 5.35657 5.44087 5.51297 5.53049 5.57092 5.65580 5.70553 5.78580 5.83087 5.87114 5.90552 5.95456 6.10114 6.15013 6.32321 6.39546 6.51459 6.57213 6.59911 6.81275 6.81876 6.89974 6.98458 7.06609 7.08560 7.36472 7.48205 7.60543 7.86707 8.10202 8.25209 8.74522 8.93051 9.51909 11.00270 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008272 B = 0.004648 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3384.247568 B = 6022.367833 C = 8312.975094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.035 3.965 3 H 0.086 0.914 4 C 0.015 3.985 5 N -0.490 5.490 6 C -0.002 4.002 7 C 0.011 3.989 8 N -0.508 5.508 9 C 0.016 3.984 10 C 0.023 3.977 11 H 0.111 0.889 12 C 0.522 3.478 13 O -0.532 6.532 14 N -0.698 5.698 15 C 0.184 3.816 16 H 0.089 0.911 17 C 0.024 3.976 18 C -0.518 4.518 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.892 5.892 22 Si 0.890 3.110 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.072 4.072 27 C -0.108 4.108 28 C -0.124 4.124 29 C -0.135 4.135 30 C -0.122 4.122 31 C -0.109 4.109 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.400 0.600 44 H 0.030 0.970 45 H 0.028 0.972 46 H 0.261 0.739 47 H 0.116 0.884 48 H 0.115 0.885 49 H 0.113 0.887 50 H 0.116 0.884 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.640 18.119 1.906 18.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 H 0.104 0.896 4 C -0.115 4.115 5 N -0.211 5.211 6 C -0.132 4.132 7 C -0.119 4.119 8 N -0.229 5.229 9 C -0.115 4.115 10 C -0.091 4.091 11 H 0.129 0.871 12 C 0.307 3.693 13 O -0.409 6.409 14 N -0.347 5.347 15 C 0.080 3.920 16 H 0.107 0.893 17 C -0.014 4.014 18 C -0.556 4.556 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.531 5.531 22 Si 0.718 3.282 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.073 4.073 27 C -0.126 4.126 28 C -0.142 4.142 29 C -0.153 4.153 30 C -0.140 4.140 31 C -0.128 4.128 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.234 0.766 44 H 0.049 0.951 45 H 0.046 0.954 46 H 0.071 0.929 47 H 0.134 0.866 48 H 0.133 0.867 49 H 0.131 0.869 50 H 0.134 0.866 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.360 17.900 1.694 18.292 hybrid contribution -0.960 -0.475 -0.701 1.280 sum 2.401 17.425 0.993 17.618 Atomic orbital electron populations 1.21899 0.93627 1.02342 1.02175 1.22473 0.96532 0.98588 0.89985 0.89584 1.23058 0.98414 0.92905 0.97132 1.63605 1.07252 1.12987 1.37287 1.23243 0.94072 1.02019 0.93829 1.22926 0.87872 1.01517 0.99590 1.63941 1.08343 1.13604 1.37041 1.22999 1.01603 0.89073 0.97807 1.22401 0.97135 0.93261 0.96319 0.87139 1.20061 0.87608 0.83316 0.78353 1.90582 1.18742 1.76869 1.54681 1.45889 1.14028 1.25578 1.49207 1.20238 0.93632 0.87416 0.90719 0.89310 1.19396 0.94278 0.89887 0.97815 1.21166 1.25320 1.16361 0.92748 0.92370 1.24976 0.96472 0.96485 0.96171 1.69964 1.33564 1.24213 1.25374 0.86561 0.78730 0.78832 0.84080 1.19698 1.20979 1.21035 1.20572 0.93865 0.95927 0.96952 1.20895 0.99567 0.98547 0.93624 1.21044 0.95147 1.00700 0.97267 1.21000 0.94934 1.00144 0.99194 1.21045 0.99572 0.99038 0.94358 1.21028 0.94462 0.99917 0.97385 0.91832 0.91960 0.92236 0.89917 0.90044 0.86799 0.90705 0.90486 0.90166 0.89337 0.88930 0.76603 0.95145 0.95391 0.92940 0.86631 0.86733 0.86852 0.86627 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.63 37.16 0.32 -0.86 16 2 C 0.03 0.33 3.05 -67.39 -0.21 0.13 16 3 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 4 C 0.01 0.16 5.80 -3.51 -0.02 0.14 16 5 N -0.49 -6.74 5.03 -226.63 -1.14 -7.88 16 6 C 0.00 -0.03 5.69 -3.49 -0.02 -0.05 16 7 C 0.01 0.13 6.13 -3.49 -0.02 0.11 16 8 N -0.51 -5.76 5.24 -225.24 -1.18 -6.95 16 9 C 0.02 0.18 5.21 -3.49 -0.02 0.17 16 10 C 0.02 0.31 2.87 -68.53 -0.20 0.12 16 11 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 12 C 0.52 9.00 6.57 -10.98 -0.07 8.92 16 13 O -0.53 -10.90 13.51 5.56 0.08 -10.83 16 14 N -0.70 -12.08 3.61 -54.93 -0.20 -12.28 16 15 C 0.18 3.64 2.20 -69.08 -0.15 3.49 16 16 H 0.09 1.96 7.28 -51.93 -0.38 1.58 16 17 C 0.02 0.56 4.51 -27.88 -0.13 0.43 16 18 C -0.52 -13.60 8.85 -34.44 -0.30 -13.90 16 19 H 0.06 1.56 7.75 -52.49 -0.41 1.15 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 22 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.07 -1.28 4.94 -104.62 -0.52 -1.80 16 27 C -0.11 -1.73 9.33 -39.58 -0.37 -2.10 16 28 C -0.12 -1.75 10.05 -39.59 -0.40 -2.15 16 29 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 30 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 31 C -0.11 -1.84 9.67 -39.58 -0.38 -2.22 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.52 6.32 -51.93 -0.33 0.19 16 35 H 0.08 0.83 7.61 -51.93 -0.40 0.44 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.11 1.87 5.34 -51.93 -0.28 1.60 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.09 1.12 7.38 -51.93 -0.38 0.74 16 42 H 0.09 0.96 6.18 -51.93 -0.32 0.64 16 43 H 0.40 6.37 8.51 -40.82 -0.35 6.02 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.12 1.73 7.71 -52.49 -0.40 1.32 16 48 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 49 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 50 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 51 H 0.12 1.95 8.04 -52.49 -0.42 1.53 16 LS Contribution 396.59 15.07 5.98 5.98 Total: -1.00 -30.55 396.59 -12.42 -42.97 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -8.29 Total: 10.07 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -3.37 Total: -12.45 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -1.78 Total: -51.73 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.55 -12.42 -42.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548674282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.216 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds